ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 234 |
| Acc36I | ACCTGC | 1 cut(s) | 777 |
| AccII | CGCG | 1 cut(s) | 404 |
| AciI | CCGC | 8 cut(s) | 69, 96, 258, 404, 477, 539, 683, 695 |
| AclWI | GGATC | 1 cut(s) | 401 |
| AcoI | YGGCCR | 2 cut(s) | 252, 312 |
| AcuI | CTGAAG | 1 cut(s) | 698 |
| AcyI | GRCGYC | 1 cut(s) | 231 |
| AflIII | ACRYGT | 1 cut(s) | 565 |
| AgsI | TTSAA | 2 cut(s) | 44, 289 |
| AjiI | CACGTC | 2 cut(s) | 142, 310 |
| AleI | CACNNNNGTG | 1 cut(s) | 776 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 173, 205 |
| AluBI | AGCT | 3 cut(s) | 319, 425, 547 |
| AluI | AGCT | 3 cut(s) | 319, 425, 547 |
| Alw21I | GWGCWC | 2 cut(s) | 427, 549 |
| Alw26I | GTCTC | 2 cut(s) | 168, 590 |
| AlwI | GGATC | 1 cut(s) | 401 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 792 |
| Ama87I | CYCGRG | 1 cut(s) | 408 |
| AoxI | GGCC | 4 cut(s) | 157, 252, 312, 668 |
| ApeKI | GCWGC | 2 cut(s) | 26, 29 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 216, 248 |
| AspA2I | CCTAGG | 1 cut(s) | 388 |
| AspLEI | GCGC | 1 cut(s) | 122 |
| AspS9I | GGNCC | 3 cut(s) | 157, 358, 668 |
| AsuII | TTCGAA | 1 cut(s) | 503 |
| AsuNHI | GCTAGC | 1 cut(s) | 452 |
| AvaI | CYCGRG | 1 cut(s) | 408 |
| AvaII | GGWCC | 1 cut(s) | 358 |
| AvrII | CCTAGG | 1 cut(s) | 388 |
| BalI | TGGCCA | 1 cut(s) | 314 |
| BanII | GRGCYC | 3 cut(s) | 427, 525, 549 |
| BauI | CACGAG | 1 cut(s) | 496 |
| BbsI | GAAGAC | 1 cut(s) | 376 |
| Bbv12I | GWGCWC | 2 cut(s) | 427, 549 |
| BbvI | GCAGC | 2 cut(s) | 13, 16 |
| BccI | CCATC | 2 cut(s) | 412, 755 |
| BceAI | ACGGC | 3 cut(s) | 133, 267, 799 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 389, 423 |
| BclI | TGATCA | 1 cut(s) | 60 |
| BcoDI | GTCTC | 2 cut(s) | 168, 590 |
| BfaI | CTAG | 5 cut(s) | 99, 111, 275, 389, 453 |
| BfoI | RGCGCY | 1 cut(s) | 123 |
| BfuAI | ACCTGC | 1 cut(s) | 777 |
| BisI | GCNGC | 3 cut(s) | 27, 30, 405 |
| BlnI | CCTAGG | 1 cut(s) | 388 |
| BlsI | GCNGC | 3 cut(s) | 28, 31, 406 |
| Bme18I | GGWCC | 1 cut(s) | 358 |
| BmeT110I | CYCGRG | 1 cut(s) | 408 |
| BmgBI | CACGTC | 2 cut(s) | 142, 310 |
| BmgT120I | GGNCC | 3 cut(s) | 157, 358, 668 |
| BmiI | GGNNCC | 1 cut(s) | 73 |
| BmsI | GCATC | 3 cut(s) | 90, 309, 491 |
| BmtI | GCTAGC | 1 cut(s) | 456 |
| BpiI | GAAGAC | 1 cut(s) | 376 |
| Bpu14I | TTCGAA | 1 cut(s) | 503 |
| BsaAI | YACGTR | 1 cut(s) | 566 |
| BsaHI | GRCGYC | 1 cut(s) | 231 |
| BsaI | GGTCTC | 1 cut(s) | 168 |
| BsaJI | CCNNGG | 2 cut(s) | 388, 609 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 173, 203, 587, 617 |
| Bse118I | RCCGGY | 2 cut(s) | 296, 670 |
| Bse1I | ACTGG | 2 cut(s) | 70, 75 |
| Bse3DI | GCAATG | 2 cut(s) | 205, 217 |
| BseDI | CCNNGG | 2 cut(s) | 388, 609 |
| BseGI | GGATG | 3 cut(s) | 201, 324, 349 |
| BseMI | GCAATG | 2 cut(s) | 205, 217 |
| BseMII | CTCAG | 1 cut(s) | 376 |
| BseNI | ACTGG | 2 cut(s) | 70, 75 |
| BseXI | GCAGC | 2 cut(s) | 13, 16 |
| Bsh1236I | CGCG | 1 cut(s) | 404 |
| BshFI | GGCC | 4 cut(s) | 159, 254, 314, 670 |
| BsiHKAI | GWGCWC | 2 cut(s) | 427, 549 |
| BsiHKCI | CYCGRG | 1 cut(s) | 408 |
| BsiSI | CCGG | 2 cut(s) | 297, 671 |
| BsmAI | GTCTC | 2 cut(s) | 168, 590 |
| BsnI | GGCC | 4 cut(s) | 159, 254, 314, 670 |
| Bso31I | GGTCTC | 1 cut(s) | 168 |
| BsoBI | CYCGRG | 1 cut(s) | 408 |
| Bsp119I | TTCGAA | 1 cut(s) | 503 |
| Bsp1286I | GDGCHC | 3 cut(s) | 427, 525, 549 |
| Bsp143I | GATC | 3 cut(s) | 60, 132, 393 |
| BspACI | CCGC | 8 cut(s) | 69, 96, 258, 404, 477, 539, 683, 695 |
| BspANI | GGCC | 4 cut(s) | 159, 254, 314, 670 |
| BspCNI | CTCAG | 1 cut(s) | 375 |
| BspFNI | CGCG | 1 cut(s) | 404 |
| BspLI | GGNNCC | 1 cut(s) | 73 |
| BspMI | ACCTGC | 1 cut(s) | 777 |
| BspOI | GCTAGC | 1 cut(s) | 456 |
| BspPI | GGATC | 1 cut(s) | 401 |
| BspT104I | TTCGAA | 1 cut(s) | 503 |
| BspTNI | GGTCTC | 1 cut(s) | 168 |
| BsrDI | GCAATG | 2 cut(s) | 205, 217 |
| BsrFI | RCCGGY | 2 cut(s) | 296, 670 |
| BsrI | ACTGG | 2 cut(s) | 70, 75 |
| BssAI | RCCGGY | 2 cut(s) | 296, 670 |
| BssECI | CCNNGG | 2 cut(s) | 388, 609 |
| BssMI | GATC | 3 cut(s) | 60, 132, 393 |
| BssNI | GRCGYC | 1 cut(s) | 231 |
| BssSI | CACGAG | 1 cut(s) | 496 |
| BssT1I | CCWWGG | 2 cut(s) | 388, 609 |
| Bst2BI | CACGAG | 1 cut(s) | 496 |
| Bst4CI | ACNGT | 1 cut(s) | 603 |
| Bst6I | CTCTTC | 1 cut(s) | 110 |
| BstACI | GRCGYC | 1 cut(s) | 231 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 488, 792 |
| BstBAI | YACGTR | 1 cut(s) | 566 |
| BstBI | TTCGAA | 1 cut(s) | 503 |
| BstC8I | GCNNGC | 4 cut(s) | 298, 402, 454, 489 |
| BstDEI | CTNAG | 2 cut(s) | 362, 712 |
| BstF5I | GGATG | 3 cut(s) | 201, 324, 349 |
| BstFNI | CGCG | 1 cut(s) | 404 |
| BstH2I | RGCGCY | 1 cut(s) | 123 |
| BstHHI | GCGC | 1 cut(s) | 122 |
| BstKTI | GATC | 3 cut(s) | 63, 135, 396 |
| BstMAI | GTCTC | 2 cut(s) | 168, 590 |
| BstMBI | GATC | 3 cut(s) | 60, 132, 393 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 488, 792 |
| BstNSI | RCATGY | 2 cut(s) | 491, 799 |
| BstUI | CGCG | 1 cut(s) | 404 |
| BstV1I | GCAGC | 2 cut(s) | 13, 16 |
| BstV2I | GAAGAC | 1 cut(s) | 376 |
| BsuRI | GGCC | 4 cut(s) | 159, 254, 314, 670 |
| BtgZI | GCGATG | 1 cut(s) | 468 |
| BtrI | CACGTC | 2 cut(s) | 142, 310 |
| BtsCI | GGATG | 3 cut(s) | 201, 324, 349 |
| BtsI | GCAGTG | 1 cut(s) | 63 |
| BtsIMutI | CAGTG | 3 cut(s) | 63, 63, 82 |
| BveI | ACCTGC | 1 cut(s) | 777 |
| Cac8I | GCNNGC | 4 cut(s) | 298, 402, 454, 489 |
| CaiI | CAGNNNCTG | 1 cut(s) | 792 |
| CfoI | GCGC | 1 cut(s) | 122 |
| Cfr10I | RCCGGY | 2 cut(s) | 296, 670 |
| Cfr13I | GGNCC | 3 cut(s) | 157, 358, 668 |
| CviAII | CATG | 5 cut(s) | 448, 488, 509, 626, 796 |
| DdeI | CTNAG | 2 cut(s) | 362, 712 |
| DpnI | GATC | 3 cut(s) | 62, 134, 395 |
| DpnII | GATC | 3 cut(s) | 60, 132, 393 |
| EaeI | YGGCCR | 2 cut(s) | 252, 312 |
| Eam1104I | CTCTTC | 1 cut(s) | 110 |
| EarI | CTCTTC | 1 cut(s) | 110 |
| EciI | GGCGGA | 3 cut(s) | 84, 698, 710 |
| Ecl136II | GAGCTC | 2 cut(s) | 425, 547 |
| Eco130I | CCWWGG | 2 cut(s) | 388, 609 |
| Eco24I | GRGCYC | 3 cut(s) | 427, 525, 549 |
| Eco31I | GGTCTC | 1 cut(s) | 168 |
| Eco47I | GGWCC | 1 cut(s) | 358 |
| Eco53kI | GAGCTC | 2 cut(s) | 425, 547 |
| Eco57I | CTGAAG | 1 cut(s) | 698 |
| Eco88I | CYCGRG | 1 cut(s) | 408 |
| EcoICRI | GAGCTC | 2 cut(s) | 425, 547 |
| EcoO109I | RGGNCCY | 1 cut(s) | 358 |
| EcoT14I | CCWWGG | 2 cut(s) | 388, 609 |
| EcoT38I | GRGCYC | 3 cut(s) | 427, 525, 549 |
| ErhI | CCWWGG | 2 cut(s) | 388, 609 |
| FaeI | CATG | 5 cut(s) | 451, 491, 512, 629, 799 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 602, 634 |
| FatI | CATG | 5 cut(s) | 447, 487, 508, 625, 795 |
| FbaI | TGATCA | 1 cut(s) | 60 |
| Fnu4HI | GCNGC | 3 cut(s) | 27, 30, 405 |
| FokI | GGATG | 3 cut(s) | 188, 311, 356 |
| FriOI | GRGCYC | 3 cut(s) | 427, 525, 549 |
| Fsp4HI | GCNGC | 3 cut(s) | 27, 30, 405 |
| FspBI | CTAG | 5 cut(s) | 99, 111, 275, 389, 453 |
| GlaI | GCGC | 1 cut(s) | 121 |
| GluI | GCNGC | 3 cut(s) | 27, 30, 405 |
| HaeII | RGCGCY | 1 cut(s) | 123 |
| HaeIII | GGCC | 4 cut(s) | 159, 254, 314, 670 |
| HapII | CCGG | 2 cut(s) | 297, 671 |
| HhaI | GCGC | 1 cut(s) | 122 |
| Hin1I | GRCGYC | 1 cut(s) | 231 |
| Hin1II | CATG | 5 cut(s) | 451, 491, 512, 629, 799 |
| Hin6I | GCGC | 1 cut(s) | 120 |
| HinP1I | GCGC | 1 cut(s) | 120 |
| HincII | GTYRAC | 1 cut(s) | 606 |
| HindII | GTYRAC | 1 cut(s) | 606 |
| HinfI | GANTC | 4 cut(s) | 89, 102, 639, 725 |
| HpaII | CCGG | 2 cut(s) | 297, 671 |
| Hpy166II | GTNNAC | 5 cut(s) | 247, 370, 606, 652, 781 |
| Hpy188I | TCNGA | 3 cut(s) | 86, 365, 551 |
| Hpy188III | TCNNGA | 2 cut(s) | 111, 526 |
| Hpy8I | GTNNAC | 5 cut(s) | 247, 370, 606, 652, 781 |
| Hpy99I | CGWCG | 2 cut(s) | 236, 311 |
| HpyAV | CCTTC | 6 cut(s) | 30, 38, 195, 208, 349, 673 |
| HpyCH4III | ACNGT | 1 cut(s) | 603 |
| HpyCH4IV | ACGT | 5 cut(s) | 141, 231, 309, 372, 565 |
| HpyCH4V | TGCA | 6 cut(s) | 32, 145, 171, 210, 482, 795 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 488, 792 |
| HpyF3I | CTNAG | 2 cut(s) | 362, 712 |
| HpySE526I | ACGT | 5 cut(s) | 141, 231, 309, 372, 565 |
| Hsp92I | GRCGYC | 1 cut(s) | 231 |
| Hsp92II | CATG | 5 cut(s) | 451, 491, 512, 629, 799 |
| HspAI | GCGC | 1 cut(s) | 120 |
| KroI | GCCGGC | 1 cut(s) | 296 |
| KroNI | GCCGGC | 1 cut(s) | 298 |
| Ksp22I | TGATCA | 1 cut(s) | 60 |
| Kzo9I | GATC | 3 cut(s) | 60, 132, 393 |
| LmnI | GCTCC | 2 cut(s) | 71, 422 |
| LpnPI | CCDG | 6 cut(s) | 51, 88, 191, 310, 684, 772 |
| Lsp1109I | GCAGC | 2 cut(s) | 13, 16 |
| LweI | GCATC | 3 cut(s) | 90, 309, 491 |
| MaeI | CTAG | 5 cut(s) | 99, 111, 275, 389, 453 |
| MaeII | ACGT | 5 cut(s) | 141, 231, 309, 372, 565 |
| MalI | GATC | 3 cut(s) | 62, 134, 395 |
| MboI | GATC | 3 cut(s) | 60, 132, 393 |
| MboII | GAAGA | 4 cut(s) | 97, 376, 541, 698 |
| MhlI | GDGCHC | 3 cut(s) | 427, 525, 549 |
| MlsI | TGGCCA | 1 cut(s) | 314 |
| MluCI | AATT | 2 cut(s) | 571, 748 |
| MluNI | TGGCCA | 1 cut(s) | 314 |
| MlyI | GAGTC | 3 cut(s) | 96, 648, 734 |
| MmeI | TCCRAC | 1 cut(s) | 681 |
| MnlI | CCTC | 8 cut(s) | 199, 338, 371, 511, 628, 671, 691, 758 |
| Mox20I | TGGCCA | 1 cut(s) | 314 |
| MroNI | GCCGGC | 1 cut(s) | 296 |
| MscI | TGGCCA | 1 cut(s) | 314 |
| MseI | TTAA | 3 cut(s) | 621, 801, 811 |
| MslI | CAYNNNNRTG | 3 cut(s) | 210, 630, 776 |
| Msp20I | TGGCCA | 1 cut(s) | 314 |
| MspA1I | CMGCKG | 1 cut(s) | 539 |
| MspI | CCGG | 2 cut(s) | 297, 671 |
| MvnI | CGCG | 1 cut(s) | 404 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 488, 792 |
| NaeI | GCCGGC | 1 cut(s) | 298 |
| NdeII | GATC | 3 cut(s) | 60, 132, 393 |
| NgoMIV | GCCGGC | 1 cut(s) | 296 |
| NheI | GCTAGC | 1 cut(s) | 452 |
| NlaIII | CATG | 5 cut(s) | 451, 491, 512, 629, 799 |
| NlaIV | GGNNCC | 1 cut(s) | 73 |
| NspI | RCATGY | 2 cut(s) | 491, 799 |
| NspV | TTCGAA | 1 cut(s) | 503 |
| OliI | CACNNNNGTG | 1 cut(s) | 776 |
| PaeI | GCATGC | 1 cut(s) | 491 |
| PaeR7I | CTCGAG | 1 cut(s) | 408 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 147, 228 |
| PdiI | GCCGGC | 1 cut(s) | 298 |
| PfeI | GAWTC | 1 cut(s) | 89 |
| PkrI | GCNGC | 3 cut(s) | 28, 31, 406 |
| PleI | GAGTC | 3 cut(s) | 96, 647, 733 |
| PpsI | GAGTC | 3 cut(s) | 96, 647, 733 |
| Ppu21I | YACGTR | 1 cut(s) | 566 |
| PpuMI | RGGWCCY | 1 cut(s) | 358 |
| Psp124BI | GAGCTC | 2 cut(s) | 427, 549 |
| Psp5II | RGGWCCY | 1 cut(s) | 358 |
| PspN4I | GGNNCC | 1 cut(s) | 73 |
| PspPI | GGNCC | 3 cut(s) | 157, 358, 668 |
| PspPPI | RGGWCCY | 1 cut(s) | 358 |
| PspXI | VCTCGAGB | 1 cut(s) | 408 |
| PstNI | CAGNNNCTG | 1 cut(s) | 792 |
| RseI | CAYNNNNRTG | 3 cut(s) | 210, 630, 776 |
| SacI | GAGCTC | 2 cut(s) | 427, 549 |
| SaqAI | TTAA | 3 cut(s) | 621, 801, 811 |
| SatI | GCNGC | 3 cut(s) | 27, 30, 405 |
| Sau3AI | GATC | 3 cut(s) | 60, 132, 393 |
| Sau96I | GGNCC | 3 cut(s) | 157, 358, 668 |
| SchI | GAGTC | 3 cut(s) | 96, 648, 734 |
| SduI | GDGCHC | 3 cut(s) | 427, 525, 549 |
| SfaNI | GCATC | 3 cut(s) | 90, 309, 491 |
| Sfr274I | CTCGAG | 1 cut(s) | 408 |
| SfuI | TTCGAA | 1 cut(s) | 503 |
| SinI | GGWCC | 1 cut(s) | 358 |
| SlaI | CTCGAG | 1 cut(s) | 408 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 210, 630, 776 |
| SmlI | CTYRAG | 1 cut(s) | 408 |
| SmoI | CTYRAG | 1 cut(s) | 408 |
| SphI | GCATGC | 1 cut(s) | 491 |
| Sse9I | AATT | 2 cut(s) | 571, 748 |
| SsiI | CCGC | 8 cut(s) | 69, 96, 258, 404, 477, 539, 683, 695 |
| SspMI | CTAG | 5 cut(s) | 99, 111, 275, 389, 453 |
| SstI | GAGCTC | 2 cut(s) | 427, 549 |
| StyI | CCWWGG | 2 cut(s) | 388, 609 |
| TaaI | ACNGT | 1 cut(s) | 603 |
| TaiI | ACGT | 5 cut(s) | 144, 234, 312, 375, 568 |
| TaqI | TCGA | 6 cut(s) | 234, 330, 409, 427, 464, 503 |
| TasI | AATT | 2 cut(s) | 571, 748 |
| TauI | GCSGC | 1 cut(s) | 407 |
| TfiI | GAWTC | 1 cut(s) | 89 |
| Tru1I | TTAA | 3 cut(s) | 621, 801, 811 |
| Tru9I | TTAA | 3 cut(s) | 621, 801, 811 |
| TscAI | CASTG | 3 cut(s) | 63, 70, 82 |
| TseI | GCWGC | 2 cut(s) | 26, 29 |
| TspDTI | ATGAA | 2 cut(s) | 190, 233 |
| TspGWI | ACGGA | 1 cut(s) | 573 |
| TspRI | CASTG | 3 cut(s) | 63, 70, 82 |
| VpaK11BI | GGWCC | 1 cut(s) | 358 |
| XbaI | TCTAGA | 1 cut(s) | 110 |
| XceI | RCATGY | 2 cut(s) | 491, 799 |
| XhoI | CTCGAG | 1 cut(s) | 408 |
| XmaJI | CCTAGG | 1 cut(s) | 388 |
| XspI | CTAG | 5 cut(s) | 99, 111, 275, 389, 453 |
| ZraI | GACGTC | 1 cut(s) | 232 |