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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 535 |
| AclWI | GGATC | 1 cut(s) | 184 |
| AcoI | YGGCCR | 1 cut(s) | 297 |
| AcsI | RAATTY | 1 cut(s) | 41 |
| AcuI | CTGAAG | 1 cut(s) | 171 |
| AcyI | GRCGYC | 1 cut(s) | 236 |
| AflII | CTTAAG | 1 cut(s) | 218 |
| AgeI | ACCGGT | 2 cut(s) | 124, 451 |
| AgsI | TTSAA | 7 cut(s) | 40, 46, 56, 104, 277, 377, 492 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 55, 87 |
| AluBI | AGCT | 1 cut(s) | 159 |
| AluI | AGCT | 1 cut(s) | 159 |
| AlwI | GGATC | 1 cut(s) | 184 |
| Ama87I | CYCGRG | 1 cut(s) | 142 |
| AoxI | GGCC | 1 cut(s) | 297 |
| ApeKI | GCWGC | 2 cut(s) | 156, 458 |
| ApoI | RAATTY | 1 cut(s) | 41 |
| AsiGI | ACCGGT | 2 cut(s) | 124, 451 |
| AsuC2I | CCSGG | 3 cut(s) | 143, 144, 264 |
| AsuHPI | GGTGA | 1 cut(s) | 139 |
| AvaI | CYCGRG | 1 cut(s) | 142 |
| BalI | TGGCCA | 1 cut(s) | 299 |
| BbvCI | CCTCAGC | 1 cut(s) | 531 |
| BbvI | GCAGC | 2 cut(s) | 168, 445 |
| BccI | CCATC | 1 cut(s) | 616 |
| BceAI | ACGGC | 1 cut(s) | 46 |
| BcnI | CCSGG | 3 cut(s) | 143, 144, 264 |
| BfaI | CTAG | 2 cut(s) | 371, 612 |
| BfmI | CTRYAG | 1 cut(s) | 381 |
| BfrI | CTTAAG | 1 cut(s) | 218 |
| BfuAI | ACCTGC | 1 cut(s) | 535 |
| BisI | GCNGC | 2 cut(s) | 157, 459 |
| BlsI | GCNGC | 2 cut(s) | 158, 460 |
| Bme1390I | CCNGG | 3 cut(s) | 143, 144, 264 |
| BmeT110I | CYCGRG | 1 cut(s) | 142 |
| BmrFI | CCNGG | 3 cut(s) | 143, 144, 264 |
| BmsI | GCATC | 2 cut(s) | 42, 405 |
| Bpu10I | CCTNAGC | 1 cut(s) | 531 |
| BpuMI | CCSGG | 3 cut(s) | 143, 144, 264 |
| BsaAI | YACGTR | 1 cut(s) | 83 |
| BsaHI | GRCGYC | 1 cut(s) | 236 |
| BsaJI | CCNNGG | 4 cut(s) | 142, 143, 263, 402 |
| BsaWI | WCCGGW | 2 cut(s) | 124, 451 |
| Bse118I | RCCGGY | 2 cut(s) | 124, 451 |
| BseDI | CCNNGG | 4 cut(s) | 142, 143, 263, 402 |
| BseGI | GGATG | 3 cut(s) | 211, 412, 506 |
| BseMII | CTCAG | 1 cut(s) | 522 |
| BseRI | GAGGAG | 1 cut(s) | 238 |
| BseXI | GCAGC | 2 cut(s) | 168, 445 |
| BshFI | GGCC | 1 cut(s) | 299 |
| BshTI | ACCGGT | 2 cut(s) | 124, 451 |
| BsiHKCI | CYCGRG | 1 cut(s) | 142 |
| BsiSI | CCGG | 4 cut(s) | 125, 143, 263, 452 |
| BslFI | GGGAC | 2 cut(s) | 160, 223 |
| BsmFI | GGGAC | 2 cut(s) | 160, 223 |
| BsnI | GGCC | 1 cut(s) | 299 |
| BsoBI | CYCGRG | 1 cut(s) | 142 |
| Bsp143I | GATC | 2 cut(s) | 189, 230 |
| Bsp19I | CCATGG | 1 cut(s) | 402 |
| BspANI | GGCC | 1 cut(s) | 299 |
| BspCNI | CTCAG | 1 cut(s) | 523 |
| BspMI | ACCTGC | 1 cut(s) | 535 |
| BspPI | GGATC | 1 cut(s) | 184 |
| BspTI | CTTAAG | 1 cut(s) | 218 |
| BsrFI | RCCGGY | 2 cut(s) | 124, 451 |
| BssAI | RCCGGY | 2 cut(s) | 124, 451 |
| BssECI | CCNNGG | 4 cut(s) | 142, 143, 263, 402 |
| BssMI | GATC | 2 cut(s) | 189, 230 |
| BssNI | GRCGYC | 1 cut(s) | 236 |
| BssT1I | CCWWGG | 1 cut(s) | 402 |
| Bst4CI | ACNGT | 3 cut(s) | 170, 579, 633 |
| Bst6I | CTCTTC | 1 cut(s) | 464 |
| BstACI | GRCGYC | 1 cut(s) | 236 |
| BstAFI | CTTAAG | 1 cut(s) | 218 |
| BstBAI | YACGTR | 1 cut(s) | 83 |
| BstC8I | GCNNGC | 1 cut(s) | 392 |
| BstDEI | CTNAG | 2 cut(s) | 345, 531 |
| BstDSI | CCRYGG | 1 cut(s) | 402 |
| BstF5I | GGATG | 3 cut(s) | 211, 412, 506 |
| BstKTI | GATC | 2 cut(s) | 192, 233 |
| BstMBI | GATC | 2 cut(s) | 189, 230 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 424, 455 |
| BstNSI | RCATGY | 2 cut(s) | 394, 449 |
| BstSCI | CCNGG | 3 cut(s) | 141, 142, 262 |
| BstSFI | CTRYAG | 1 cut(s) | 381 |
| BstV1I | GCAGC | 2 cut(s) | 168, 445 |
| BsuRI | GGCC | 1 cut(s) | 299 |
| BtgI | CCRYGG | 1 cut(s) | 402 |
| BtsCI | GGATG | 3 cut(s) | 211, 412, 506 |
| BtsIMutI | CAGTG | 1 cut(s) | 175 |
| BveI | ACCTGC | 1 cut(s) | 535 |
| Cac8I | GCNNGC | 1 cut(s) | 392 |
| Cfr10I | RCCGGY | 2 cut(s) | 124, 451 |
| Cfr9I | CCCGGG | 1 cut(s) | 142 |
| CseI | GACGC | 2 cut(s) | 185, 225 |
| CspAI | ACCGGT | 2 cut(s) | 124, 451 |
| CviAII | CATG | 3 cut(s) | 391, 403, 446 |
| CviJI | RGCY | 5 cut(s) | 159, 299, 427, 458, 620 |
| CviKI_1 | RGCY | 5 cut(s) | 159, 299, 427, 458, 620 |
| DdeI | CTNAG | 2 cut(s) | 345, 531 |
| DpnI | GATC | 2 cut(s) | 191, 232 |
| DpnII | GATC | 2 cut(s) | 189, 230 |
| EaeI | YGGCCR | 1 cut(s) | 297 |
| Eam1104I | CTCTTC | 1 cut(s) | 464 |
| EarI | CTCTTC | 1 cut(s) | 464 |
| Eco130I | CCWWGG | 1 cut(s) | 402 |
| Eco57I | CTGAAG | 1 cut(s) | 171 |
| Eco88I | CYCGRG | 1 cut(s) | 142 |
| EcoT14I | CCWWGG | 1 cut(s) | 402 |
| ErhI | CCWWGG | 1 cut(s) | 402 |
| FaeI | CATG | 3 cut(s) | 394, 406, 449 |
| FaiI | YATR | 7 cut(s) | 77, 281, 287, 392, 404, 447, 664 |
| FaqI | GGGAC | 2 cut(s) | 160, 223 |
| FatI | CATG | 3 cut(s) | 390, 402, 445 |
| Fnu4HI | GCNGC | 2 cut(s) | 157, 459 |
| FokI | GGATG | 3 cut(s) | 218, 419, 493 |
| Fsp4HI | GCNGC | 2 cut(s) | 157, 459 |
| FspBI | CTAG | 2 cut(s) | 371, 612 |
| GluI | GCNGC | 2 cut(s) | 157, 459 |
| HaeIII | GGCC | 1 cut(s) | 299 |
| HapII | CCGG | 4 cut(s) | 125, 143, 263, 452 |
| HgaI | GACGC | 2 cut(s) | 185, 225 |
| Hin1I | GRCGYC | 1 cut(s) | 236 |
| Hin1II | CATG | 3 cut(s) | 394, 406, 449 |
| HinfI | GANTC | 1 cut(s) | 653 |
| HpaII | CCGG | 4 cut(s) | 125, 143, 263, 452 |
| HphI | GGTGA | 1 cut(s) | 139 |
| Hpy166II | GTNNAC | 3 cut(s) | 351, 551, 636 |
| Hpy188I | TCNGA | 1 cut(s) | 189 |
| Hpy188III | TCNNGA | 2 cut(s) | 136, 332 |
| Hpy8I | GTNNAC | 3 cut(s) | 351, 551, 636 |
| HpyAV | CCTTC | 5 cut(s) | 81, 98, 146, 313, 433 |
| HpyCH4III | ACNGT | 3 cut(s) | 170, 579, 633 |
| HpyCH4IV | ACGT | 1 cut(s) | 82 |
| HpyCH4V | TGCA | 4 cut(s) | 11, 418, 449, 461 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 424, 455 |
| HpyF3I | CTNAG | 2 cut(s) | 345, 531 |
| HpySE526I | ACGT | 1 cut(s) | 82 |
| Hsp92I | GRCGYC | 1 cut(s) | 236 |
| Hsp92II | CATG | 3 cut(s) | 394, 406, 449 |
| Kzo9I | GATC | 2 cut(s) | 189, 230 |
| LpnPI | CCDG | 9 cut(s) | 138, 156, 276, 345, 369, 465, 540, 606, 632 |
| Lsp1109I | GCAGC | 2 cut(s) | 168, 445 |
| LweI | GCATC | 2 cut(s) | 42, 405 |
| MaeI | CTAG | 2 cut(s) | 371, 612 |
| MaeII | ACGT | 1 cut(s) | 82 |
| MaeIII | GTNAC | 1 cut(s) | 310 |
| MalI | GATC | 2 cut(s) | 191, 232 |
| MboI | GATC | 2 cut(s) | 189, 230 |
| MboII | GAAGA | 2 cut(s) | 28, 481 |
| MlsI | TGGCCA | 1 cut(s) | 299 |
| MluCI | AATT | 2 cut(s) | 41, 659 |
| MluNI | TGGCCA | 1 cut(s) | 299 |
| MnlI | CCTC | 7 cut(s) | 166, 196, 259, 380, 465, 526, 615 |
| Mox20I | TGGCCA | 1 cut(s) | 299 |
| MscI | TGGCCA | 1 cut(s) | 299 |
| MseI | TTAA | 1 cut(s) | 219 |
| MslI | CAYNNNNRTG | 1 cut(s) | 407 |
| Msp20I | TGGCCA | 1 cut(s) | 299 |
| MspCI | CTTAAG | 1 cut(s) | 218 |
| MspI | CCGG | 4 cut(s) | 125, 143, 263, 452 |
| MspR9I | CCNGG | 3 cut(s) | 143, 144, 264 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 424, 455 |
| NciI | CCSGG | 3 cut(s) | 143, 144, 264 |
| NcoI | CCATGG | 1 cut(s) | 402 |
| NdeII | GATC | 2 cut(s) | 189, 230 |
| NlaIII | CATG | 3 cut(s) | 394, 406, 449 |
| NmuCI | GTSAC | 1 cut(s) | 310 |
| NspI | RCATGY | 2 cut(s) | 394, 449 |
| PaeI | GCATGC | 1 cut(s) | 394 |
| PfeI | GAWTC | 1 cut(s) | 653 |
| PinAI | ACCGGT | 2 cut(s) | 124, 451 |
| PkrI | GCNGC | 2 cut(s) | 158, 460 |
| Ppu21I | YACGTR | 1 cut(s) | 83 |
| RseI | CAYNNNNRTG | 1 cut(s) | 407 |
| SaqAI | TTAA | 1 cut(s) | 219 |
| SatI | GCNGC | 2 cut(s) | 157, 459 |
| Sau3AI | GATC | 2 cut(s) | 189, 230 |
| ScrFI | CCNGG | 3 cut(s) | 143, 144, 264 |
| SfaNI | GCATC | 2 cut(s) | 42, 405 |
| SfcI | CTRYAG | 1 cut(s) | 381 |
| SgrAI | CRCCGGYG | 1 cut(s) | 451 |
| SmaI | CCCGGG | 1 cut(s) | 144 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 407 |
| SmlI | CTYRAG | 1 cut(s) | 218 |
| SmoI | CTYRAG | 1 cut(s) | 218 |
| SphI | GCATGC | 1 cut(s) | 394 |
| Sse9I | AATT | 2 cut(s) | 41, 659 |
| SspMI | CTAG | 2 cut(s) | 371, 612 |
| StyD4I | CCNGG | 3 cut(s) | 141, 142, 262 |
| StyI | CCWWGG | 1 cut(s) | 402 |
| TaaI | ACNGT | 3 cut(s) | 170, 579, 633 |
| TaiI | ACGT | 1 cut(s) | 85 |
| TasI | AATT | 2 cut(s) | 41, 659 |
| TfiI | GAWTC | 1 cut(s) | 653 |
| Tru1I | TTAA | 1 cut(s) | 219 |
| Tru9I | TTAA | 1 cut(s) | 219 |
| TscAI | CASTG | 1 cut(s) | 175 |
| TseFI | GTSAC | 1 cut(s) | 310 |
| TseI | GCWGC | 2 cut(s) | 156, 458 |
| Tsp45I | GTSAC | 1 cut(s) | 310 |
| TspDTI | ATGAA | 5 cut(s) | 296, 482, 495, 571, 588 |
| TspMI | CCCGGG | 1 cut(s) | 142 |
| TspRI | CASTG | 1 cut(s) | 175 |
| Vha464I | CTTAAG | 1 cut(s) | 218 |
| XapI | RAATTY | 1 cut(s) | 41 |
| XceI | RCATGY | 2 cut(s) | 394, 449 |
| XmaI | CCCGGG | 1 cut(s) | 142 |
| XspI | CTAG | 2 cut(s) | 371, 612 |