ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 50 - 123 | 2.3e-11 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 425 |
| Acc36I | ACCTGC | 1 cut(s) | 165 |
| AccII | CGCG | 1 cut(s) | 166 |
| AclWI | GGATC | 2 cut(s) | 309, 430 |
| AcoI | YGGCCR | 1 cut(s) | 486 |
| AcsI | RAATTY | 3 cut(s) | 22, 242, 334 |
| AcuI | CTGAAG | 1 cut(s) | 416 |
| AfaI | GTAC | 2 cut(s) | 413, 449 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 298, 516 |
| AgsI | TTSAA | 3 cut(s) | 56, 236, 254 |
| AjnI | CCWGG | 1 cut(s) | 515 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 486, 518 |
| AluBI | AGCT | 3 cut(s) | 40, 193, 210 |
| AluI | AGCT | 3 cut(s) | 40, 193, 210 |
| Alw26I | GTCTC | 2 cut(s) | 4, 525 |
| AlwI | GGATC | 2 cut(s) | 309, 430 |
| AoxI | GGCC | 2 cut(s) | 87, 486 |
| ApeKI | GCWGC | 1 cut(s) | 77 |
| ApoI | RAATTY | 3 cut(s) | 22, 242, 334 |
| AscI | GGCGCGCC | 1 cut(s) | 164 |
| AspLEI | GCGC | 3 cut(s) | 166, 168, 426 |
| AspS9I | GGNCC | 3 cut(s) | 15, 88, 326 |
| AsuHPI | GGTGA | 2 cut(s) | 238, 505 |
| AvaII | GGWCC | 2 cut(s) | 15, 326 |
| BbsI | GAAGAC | 2 cut(s) | 63, 501 |
| BbvI | GCAGC | 1 cut(s) | 64 |
| BccI | CCATC | 1 cut(s) | 365 |
| BceAI | ACGGC | 1 cut(s) | 473 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 388, 422 |
| BciT130I | CCWGG | 1 cut(s) | 517 |
| BclI | TGATCA | 1 cut(s) | 465 |
| BcoDI | GTCTC | 2 cut(s) | 4, 525 |
| BfaI | CTAG | 1 cut(s) | 96 |
| BfuAI | ACCTGC | 1 cut(s) | 165 |
| BisI | GCNGC | 1 cut(s) | 78 |
| BlsI | GCNGC | 1 cut(s) | 79 |
| Bme1390I | CCNGG | 1 cut(s) | 517 |
| Bme18I | GGWCC | 2 cut(s) | 15, 326 |
| BmgT120I | GGNCC | 3 cut(s) | 15, 88, 326 |
| BmiI | GGNNCC | 2 cut(s) | 130, 508 |
| BmrFI | CCNGG | 1 cut(s) | 517 |
| BmsI | GCATC | 2 cut(s) | 89, 435 |
| BpiI | GAAGAC | 2 cut(s) | 63, 501 |
| BpmI | CTGGAG | 1 cut(s) | 147 |
| BpuEI | CTTGAG | 1 cut(s) | 278 |
| BsaI | GGTCTC | 1 cut(s) | 525 |
| BsaJI | CCNNGG | 2 cut(s) | 329, 489 |
| BsaWI | WCCGGW | 1 cut(s) | 349 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 505, 535, 539 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 298, 516 |
| BseBI | CCWGG | 1 cut(s) | 517 |
| BseDI | CCNNGG | 2 cut(s) | 329, 489 |
| BseGI | GGATG | 1 cut(s) | 426 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 298, 516 |
| BsePI | GCGCGC | 1 cut(s) | 164 |
| BseXI | GCAGC | 1 cut(s) | 64 |
| Bsh1236I | CGCG | 1 cut(s) | 166 |
| BshFI | GGCC | 2 cut(s) | 89, 488 |
| BsiSI | CCGG | 1 cut(s) | 350 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 298, 516 |
| BsmAI | GTCTC | 2 cut(s) | 4, 525 |
| BsmBI | CGTCTC | 1 cut(s) | 4 |
| BsnI | GGCC | 2 cut(s) | 89, 488 |
| Bso31I | GGTCTC | 1 cut(s) | 525 |
| Bsp143I | GATC | 4 cut(s) | 112, 301, 435, 465 |
| BspANI | GGCC | 2 cut(s) | 89, 488 |
| BspFNI | CGCG | 1 cut(s) | 166 |
| BspLI | GGNNCC | 2 cut(s) | 130, 508 |
| BspMI | ACCTGC | 1 cut(s) | 165 |
| BspPI | GGATC | 2 cut(s) | 309, 430 |
| BspTNI | GGTCTC | 1 cut(s) | 525 |
| BssECI | CCNNGG | 2 cut(s) | 329, 489 |
| BssHII | GCGCGC | 1 cut(s) | 164 |
| BssMI | GATC | 4 cut(s) | 112, 301, 435, 465 |
| BssT1I | CCWWGG | 1 cut(s) | 329 |
| Bst2UI | CCWGG | 1 cut(s) | 517 |
| Bst4CI | ACNGT | 2 cut(s) | 15, 555 |
| BstC8I | GCNNGC | 2 cut(s) | 162, 166 |
| BstDEI | CTNAG | 1 cut(s) | 281 |
| BstDSI | CCRYGG | 1 cut(s) | 489 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 296, 514 |
| BstF5I | GGATG | 1 cut(s) | 426 |
| BstFNI | CGCG | 1 cut(s) | 166 |
| BstHHI | GCGC | 3 cut(s) | 166, 168, 426 |
| BstKTI | GATC | 4 cut(s) | 115, 304, 438, 468 |
| BstMAI | GTCTC | 2 cut(s) | 4, 525 |
| BstMBI | GATC | 4 cut(s) | 112, 301, 435, 465 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 86, 485 |
| BstNI | CCWGG | 1 cut(s) | 517 |
| BstSCI | CCNGG | 1 cut(s) | 515 |
| BstUI | CGCG | 1 cut(s) | 166 |
| BstV1I | GCAGC | 1 cut(s) | 64 |
| BstV2I | GAAGAC | 2 cut(s) | 63, 501 |
| BstX2I | RGATCY | 1 cut(s) | 435 |
| BstYI | RGATCY | 1 cut(s) | 435 |
| BsuRI | GGCC | 2 cut(s) | 89, 488 |
| BtgI | CCRYGG | 1 cut(s) | 489 |
| BtgZI | GCGATG | 1 cut(s) | 460 |
| BtsCI | GGATG | 1 cut(s) | 426 |
| BveI | ACCTGC | 1 cut(s) | 165 |
| Cac8I | GCNNGC | 2 cut(s) | 162, 166 |
| CfoI | GCGC | 3 cut(s) | 166, 168, 426 |
| Cfr13I | GGNCC | 3 cut(s) | 15, 88, 326 |
| CsiI | ACCWGGT | 1 cut(s) | 515 |
| Csp6I | GTAC | 2 cut(s) | 412, 448 |
| CviAII | CATG | 2 cut(s) | 258, 344 |
| CviQI | GTAC | 2 cut(s) | 412, 448 |
| DdeI | CTNAG | 1 cut(s) | 281 |
| DpnI | GATC | 4 cut(s) | 114, 303, 437, 467 |
| DpnII | GATC | 4 cut(s) | 112, 301, 435, 465 |
| EaeI | YGGCCR | 1 cut(s) | 486 |
| Eco130I | CCWWGG | 1 cut(s) | 329 |
| Eco31I | GGTCTC | 1 cut(s) | 525 |
| Eco47I | GGWCC | 2 cut(s) | 15, 326 |
| Eco57I | CTGAAG | 1 cut(s) | 416 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 296, 514 |
| EcoO109I | RGGNCCY | 1 cut(s) | 326 |
| EcoRII | CCWGG | 1 cut(s) | 515 |
| EcoT14I | CCWWGG | 1 cut(s) | 329 |
| ErhI | CCWWGG | 1 cut(s) | 329 |
| Esp3I | CGTCTC | 1 cut(s) | 4 |
| FaeI | CATG | 2 cut(s) | 261, 347 |
| FatI | CATG | 2 cut(s) | 257, 343 |
| FauNDI | CATATG | 1 cut(s) | 34 |
| FbaI | TGATCA | 1 cut(s) | 465 |
| Fnu4HI | GCNGC | 1 cut(s) | 78 |
| FokI | GGATG | 1 cut(s) | 413 |
| Fsp4HI | GCNGC | 1 cut(s) | 78 |
| FspAI | RTGCGCAY | 1 cut(s) | 425 |
| FspBI | CTAG | 1 cut(s) | 96 |
| FspI | TGCGCA | 1 cut(s) | 425 |
| GlaI | GCGC | 3 cut(s) | 165, 167, 425 |
| GluI | GCNGC | 1 cut(s) | 78 |
| GsuI | CTGGAG | 1 cut(s) | 147 |
| HaeIII | GGCC | 2 cut(s) | 89, 488 |
| HapII | CCGG | 1 cut(s) | 350 |
| HhaI | GCGC | 3 cut(s) | 166, 168, 426 |
| Hin1II | CATG | 2 cut(s) | 261, 347 |
| Hin6I | GCGC | 3 cut(s) | 164, 166, 424 |
| HinP1I | GCGC | 3 cut(s) | 164, 166, 424 |
| HindIII | AAGCTT | 1 cut(s) | 208 |
| HpaII | CCGG | 1 cut(s) | 350 |
| HphI | GGTGA | 2 cut(s) | 238, 505 |
| Hpy188I | TCNGA | 4 cut(s) | 204, 306, 435, 535 |
| Hpy188III | TCNNGA | 3 cut(s) | 126, 218, 295 |
| HpyAV | CCTTC | 5 cut(s) | 230, 292, 440, 520, 540 |
| HpyCH4III | ACNGT | 2 cut(s) | 15, 555 |
| HpyCH4IV | ACGT | 2 cut(s) | 60, 404 |
| HpyCH4V | TGCA | 2 cut(s) | 80, 380 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 86, 485 |
| HpyF3I | CTNAG | 1 cut(s) | 281 |
| HpySE526I | ACGT | 2 cut(s) | 60, 404 |
| Hsp92II | CATG | 2 cut(s) | 261, 347 |
| HspAI | GCGC | 3 cut(s) | 164, 166, 424 |
| Ksp22I | TGATCA | 1 cut(s) | 465 |
| Kzo9I | GATC | 4 cut(s) | 112, 301, 435, 465 |
| LmnI | GCTCC | 4 cut(s) | 128, 352, 484, 512 |
| LpnPI | CCDG | 9 cut(s) | 111, 146, 170, 211, 347, 363, 495, 502, 529 |
| Lsp1109I | GCAGC | 1 cut(s) | 64 |
| LweI | GCATC | 2 cut(s) | 89, 435 |
| MabI | ACCWGGT | 1 cut(s) | 515 |
| MaeI | CTAG | 1 cut(s) | 96 |
| MaeII | ACGT | 2 cut(s) | 60, 404 |
| MaeIII | GTNAC | 1 cut(s) | 61 |
| MalI | GATC | 4 cut(s) | 114, 303, 437, 467 |
| MboI | GATC | 4 cut(s) | 112, 301, 435, 465 |
| MboII | GAAGA | 3 cut(s) | 68, 275, 506 |
| MflI | RGATCY | 1 cut(s) | 435 |
| MluCI | AATT | 3 cut(s) | 22, 242, 334 |
| MnlI | CCTC | 3 cut(s) | 302, 317, 450 |
| MseI | TTAA | 1 cut(s) | 20 |
| MspI | CCGG | 1 cut(s) | 350 |
| MspR9I | CCNGG | 1 cut(s) | 517 |
| MvaI | CCWGG | 1 cut(s) | 517 |
| MvnI | CGCG | 1 cut(s) | 166 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 86, 485 |
| NdeI | CATATG | 1 cut(s) | 34 |
| NdeII | GATC | 4 cut(s) | 112, 301, 435, 465 |
| NlaIII | CATG | 2 cut(s) | 261, 347 |
| NlaIV | GGNNCC | 2 cut(s) | 130, 508 |
| NmeAIII | GCCGAG | 1 cut(s) | 176 |
| NsbI | TGCGCA | 1 cut(s) | 425 |
| PalAI | GGCGCGCC | 1 cut(s) | 164 |
| PauI | GCGCGC | 1 cut(s) | 164 |
| PkrI | GCNGC | 1 cut(s) | 79 |
| PpuMI | RGGWCCY | 1 cut(s) | 326 |
| Psp5II | RGGWCCY | 1 cut(s) | 326 |
| Psp6I | CCWGG | 1 cut(s) | 515 |
| PspGI | CCWGG | 1 cut(s) | 515 |
| PspN4I | GGNNCC | 2 cut(s) | 130, 508 |
| PspPI | GGNCC | 3 cut(s) | 15, 88, 326 |
| PspPPI | RGGWCCY | 1 cut(s) | 326 |
| PsuI | RGATCY | 1 cut(s) | 435 |
| PteI | GCGCGC | 1 cut(s) | 164 |
| RsaI | GTAC | 2 cut(s) | 413, 449 |
| RsaNI | GTAC | 2 cut(s) | 412, 448 |
| SaqAI | TTAA | 1 cut(s) | 20 |
| SatI | GCNGC | 1 cut(s) | 78 |
| Sau3AI | GATC | 4 cut(s) | 112, 301, 435, 465 |
| Sau96I | GGNCC | 3 cut(s) | 15, 88, 326 |
| ScrFI | CCNGG | 1 cut(s) | 517 |
| SexAI | ACCWGGT | 1 cut(s) | 515 |
| SfaNI | GCATC | 2 cut(s) | 89, 435 |
| SgsI | GGCGCGCC | 1 cut(s) | 164 |
| SinI | GGWCC | 2 cut(s) | 15, 326 |
| SmlI | CTYRAG | 1 cut(s) | 293 |
| SmoI | CTYRAG | 1 cut(s) | 293 |
| Sse9I | AATT | 3 cut(s) | 22, 242, 334 |
| SspMI | CTAG | 1 cut(s) | 96 |
| StyD4I | CCNGG | 1 cut(s) | 515 |
| StyI | CCWWGG | 1 cut(s) | 329 |
| TaaI | ACNGT | 2 cut(s) | 15, 555 |
| TaiI | ACGT | 2 cut(s) | 63, 407 |
| TaqI | TCGA | 2 cut(s) | 50, 217 |
| TasI | AATT | 3 cut(s) | 22, 242, 334 |
| TatI | WGTACW | 2 cut(s) | 411, 447 |
| Tru1I | TTAA | 1 cut(s) | 20 |
| Tru9I | TTAA | 1 cut(s) | 20 |
| TseI | GCWGC | 1 cut(s) | 77 |
| TspDTI | ATGAA | 1 cut(s) | 329 |
| VpaK11BI | GGWCC | 2 cut(s) | 15, 326 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 296, 514 |
| XapI | RAATTY | 3 cut(s) | 22, 242, 334 |
| XspI | CTAG | 1 cut(s) | 96 |