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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 421 |
| Acc16I | TGCGCA | 1 cut(s) | 144 |
| Acc65I | GGTACC | 2 cut(s) | 280, 319 |
| AccB1I | GGYRCC | 3 cut(s) | 235, 280, 319 |
| AccII | CGCG | 1 cut(s) | 18 |
| AciI | CCGC | 1 cut(s) | 317 |
| AcyI | GRCGYC | 1 cut(s) | 418 |
| AfaI | GTAC | 2 cut(s) | 282, 321 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 36 |
| AgsI | TTSAA | 3 cut(s) | 27, 166, 385 |
| AjnI | CCWGG | 2 cut(s) | 130, 239 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 377, 409 |
| AluBI | AGCT | 1 cut(s) | 120 |
| AluI | AGCT | 1 cut(s) | 120 |
| ApeKI | GCWGC | 1 cut(s) | 429 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 170 |
| Asp718I | GGTACC | 2 cut(s) | 280, 319 |
| AspLEI | GCGC | 2 cut(s) | 145, 297 |
| AsuHPI | GGTGA | 1 cut(s) | 232 |
| BaeGI | GKGCMC | 1 cut(s) | 240 |
| BanI | GGYRCC | 3 cut(s) | 235, 280, 319 |
| BbvI | GCAGC | 1 cut(s) | 441 |
| BccI | CCATC | 1 cut(s) | 208 |
| BciT130I | CCWGG | 2 cut(s) | 132, 241 |
| BfaI | CTAG | 2 cut(s) | 72, 408 |
| BisI | GCNGC | 1 cut(s) | 430 |
| BlsI | GCNGC | 1 cut(s) | 431 |
| Bme1390I | CCNGG | 2 cut(s) | 132, 241 |
| BmiI | GGNNCC | 3 cut(s) | 237, 282, 321 |
| BmrFI | CCNGG | 2 cut(s) | 132, 241 |
| BmsI | GCATC | 1 cut(s) | 315 |
| Bpu10I | CCTNAGC | 1 cut(s) | 180 |
| Bsa29I | ATCGAT | 2 cut(s) | 113, 309 |
| BsaHI | GRCGYC | 1 cut(s) | 418 |
| BsaJI | CCNNGG | 2 cut(s) | 239, 423 |
| BsaWI | WCCGGW | 1 cut(s) | 364 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 187, 217 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 36 |
| Bse118I | RCCGGY | 1 cut(s) | 349 |
| Bse1I | ACTGG | 2 cut(s) | 69, 185 |
| BseBI | CCWGG | 2 cut(s) | 132, 241 |
| BseCI | ATCGAT | 2 cut(s) | 113, 309 |
| BseDI | CCNNGG | 2 cut(s) | 239, 423 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 36 |
| BseNI | ACTGG | 2 cut(s) | 69, 185 |
| BseSI | GKGCMC | 1 cut(s) | 240 |
| BseXI | GCAGC | 1 cut(s) | 441 |
| Bsh1236I | CGCG | 1 cut(s) | 18 |
| BshNI | GGYRCC | 3 cut(s) | 235, 280, 319 |
| BshVI | ATCGAT | 2 cut(s) | 113, 309 |
| BsiSI | CCGG | 2 cut(s) | 350, 365 |
| BslFI | GGGAC | 2 cut(s) | 405, 463 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 36 |
| BsmFI | GGGAC | 2 cut(s) | 405, 463 |
| Bsp1286I | GDGCHC | 1 cut(s) | 240 |
| Bsp143I | GATC | 2 cut(s) | 13, 114 |
| BspACI | CCGC | 1 cut(s) | 317 |
| BspDI | ATCGAT | 2 cut(s) | 113, 309 |
| BspFNI | CGCG | 1 cut(s) | 18 |
| BspLI | GGNNCC | 3 cut(s) | 237, 282, 321 |
| BspT107I | GGYRCC | 3 cut(s) | 235, 280, 319 |
| BsrFI | RCCGGY | 1 cut(s) | 349 |
| BsrI | ACTGG | 2 cut(s) | 69, 185 |
| BssAI | RCCGGY | 1 cut(s) | 349 |
| BssECI | CCNNGG | 2 cut(s) | 239, 423 |
| BssMI | GATC | 2 cut(s) | 13, 114 |
| BssNI | GRCGYC | 1 cut(s) | 418 |
| BssT1I | CCWWGG | 1 cut(s) | 423 |
| Bst2UI | CCWGG | 2 cut(s) | 132, 241 |
| Bst4CI | ACNGT | 2 cut(s) | 54, 162 |
| BstACI | GRCGYC | 1 cut(s) | 418 |
| BstC8I | GCNNGC | 2 cut(s) | 153, 293 |
| BstDEI | CTNAG | 3 cut(s) | 180, 300, 399 |
| BstFNI | CGCG | 1 cut(s) | 18 |
| BstHHI | GCGC | 2 cut(s) | 145, 297 |
| BstKTI | GATC | 2 cut(s) | 16, 117 |
| BstMBI | GATC | 2 cut(s) | 13, 114 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 303, 404, 438 |
| BstNI | CCWGG | 2 cut(s) | 132, 241 |
| BstSCI | CCNGG | 2 cut(s) | 130, 239 |
| BstSLI | GKGCMC | 1 cut(s) | 240 |
| BstUI | CGCG | 1 cut(s) | 18 |
| BstV1I | GCAGC | 1 cut(s) | 441 |
| Bsu15I | ATCGAT | 2 cut(s) | 113, 309 |
| BsuTUI | ATCGAT | 2 cut(s) | 113, 309 |
| BtsIMutI | CAGTG | 1 cut(s) | 192 |
| Cac8I | GCNNGC | 2 cut(s) | 153, 293 |
| CfoI | GCGC | 2 cut(s) | 145, 297 |
| Cfr10I | RCCGGY | 1 cut(s) | 349 |
| ClaI | ATCGAT | 2 cut(s) | 113, 309 |
| Csp6I | GTAC | 2 cut(s) | 281, 320 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 48, 83 |
| CviQI | GTAC | 2 cut(s) | 281, 320 |
| DdeI | CTNAG | 3 cut(s) | 180, 300, 399 |
| DpnI | GATC | 2 cut(s) | 15, 116 |
| DpnII | GATC | 2 cut(s) | 13, 114 |
| Eco130I | CCWWGG | 1 cut(s) | 423 |
| EcoRII | CCWGG | 2 cut(s) | 130, 239 |
| EcoT14I | CCWWGG | 1 cut(s) | 423 |
| ErhI | CCWWGG | 1 cut(s) | 423 |
| FaiI | YATR | 3 cut(s) | 98, 125, 170 |
| FaqI | GGGAC | 2 cut(s) | 405, 463 |
| Fnu4HI | GCNGC | 1 cut(s) | 430 |
| Fsp4HI | GCNGC | 1 cut(s) | 430 |
| FspBI | CTAG | 2 cut(s) | 72, 408 |
| FspI | TGCGCA | 1 cut(s) | 144 |
| GlaI | GCGC | 2 cut(s) | 144, 296 |
| GluI | GCNGC | 1 cut(s) | 430 |
| HapII | CCGG | 2 cut(s) | 350, 365 |
| HhaI | GCGC | 2 cut(s) | 145, 297 |
| Hin1I | GRCGYC | 1 cut(s) | 418 |
| Hin6I | GCGC | 2 cut(s) | 143, 295 |
| HinP1I | GCGC | 2 cut(s) | 143, 295 |
| HpaII | CCGG | 2 cut(s) | 350, 365 |
| HphI | GGTGA | 1 cut(s) | 232 |
| Hpy188III | TCNNGA | 1 cut(s) | 60 |
| HpyAV | CCTTC | 2 cut(s) | 379, 397 |
| HpyCH4III | ACNGT | 2 cut(s) | 54, 162 |
| HpyCH4IV | ACGT | 1 cut(s) | 418 |
| HpyCH4V | TGCA | 2 cut(s) | 50, 291 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 303, 404, 438 |
| HpyF3I | CTNAG | 3 cut(s) | 180, 300, 399 |
| HpySE526I | ACGT | 1 cut(s) | 418 |
| Hsp92I | GRCGYC | 1 cut(s) | 418 |
| HspAI | GCGC | 2 cut(s) | 143, 295 |
| KpnI | GGTACC | 2 cut(s) | 284, 323 |
| Kzo9I | GATC | 2 cut(s) | 13, 114 |
| LmnI | GCTCC | 1 cut(s) | 88 |
| Lsp1109I | GCAGC | 1 cut(s) | 441 |
| LweI | GCATC | 1 cut(s) | 315 |
| MaeI | CTAG | 2 cut(s) | 72, 408 |
| MaeII | ACGT | 1 cut(s) | 418 |
| MalI | GATC | 2 cut(s) | 15, 116 |
| MboI | GATC | 2 cut(s) | 13, 114 |
| MhlI | GDGCHC | 1 cut(s) | 240 |
| MmeI | TCCRAC | 2 cut(s) | 318, 394 |
| MnlI | CCTC | 4 cut(s) | 36, 211, 213, 226 |
| MroXI | GAANNNNTTC | 1 cut(s) | 170 |
| MseI | TTAA | 1 cut(s) | 255 |
| MspI | CCGG | 2 cut(s) | 350, 365 |
| MspR9I | CCNGG | 2 cut(s) | 132, 241 |
| MvaI | CCWGG | 2 cut(s) | 132, 241 |
| MvnI | CGCG | 1 cut(s) | 18 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 303, 404, 438 |
| NdeII | GATC | 2 cut(s) | 13, 114 |
| NlaIV | GGNNCC | 3 cut(s) | 237, 282, 321 |
| NsbI | TGCGCA | 1 cut(s) | 144 |
| PdmI | GAANNNNTTC | 1 cut(s) | 170 |
| PkrI | GCNGC | 1 cut(s) | 431 |
| Psp6I | CCWGG | 2 cut(s) | 130, 239 |
| PspGI | CCWGG | 2 cut(s) | 130, 239 |
| PspN4I | GGNNCC | 3 cut(s) | 237, 282, 321 |
| RsaI | GTAC | 2 cut(s) | 282, 321 |
| RsaNI | GTAC | 2 cut(s) | 281, 320 |
| SaqAI | TTAA | 1 cut(s) | 255 |
| SatI | GCNGC | 1 cut(s) | 430 |
| Sau3AI | GATC | 2 cut(s) | 13, 114 |
| ScrFI | CCNGG | 2 cut(s) | 132, 241 |
| SduI | GDGCHC | 1 cut(s) | 240 |
| SetI | ASST | 8 cut(s) | 25, 122, 222, 237, 253, 286, 390, 421 |
| SfaNI | GCATC | 1 cut(s) | 315 |
| SsiI | CCGC | 1 cut(s) | 317 |
| SspMI | CTAG | 2 cut(s) | 72, 408 |
| StyD4I | CCNGG | 2 cut(s) | 130, 239 |
| StyI | CCWWGG | 1 cut(s) | 423 |
| TaaI | ACNGT | 2 cut(s) | 54, 162 |
| TaiI | ACGT | 1 cut(s) | 421 |
| TaqI | TCGA | 2 cut(s) | 113, 309 |
| Tru1I | TTAA | 1 cut(s) | 255 |
| Tru9I | TTAA | 1 cut(s) | 255 |
| TscAI | CASTG | 1 cut(s) | 192 |
| TseI | GCWGC | 1 cut(s) | 429 |
| TspDTI | ATGAA | 2 cut(s) | 112, 239 |
| TspRI | CASTG | 1 cut(s) | 192 |
| XmnI | GAANNNNTTC | 1 cut(s) | 170 |
| XspI | CTAG | 2 cut(s) | 72, 408 |
| ZraI | GACGTC | 1 cut(s) | 419 |