Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 913 |
| AccI | GTMKAC | 1 cut(s) | 781 |
| AccII | CGCG | 1 cut(s) | 303 |
| AccIII | TCCGGA | 1 cut(s) | 266 |
| AciI | CCGC | 3 cut(s) | 283, 953, 974 |
| AclWI | GGATC | 2 cut(s) | 153, 519 |
| AcsI | RAATTY | 3 cut(s) | 394, 818, 1136 |
| AcuI | CTGAAG | 2 cut(s) | 43, 368 |
| AcyI | GRCGYC | 1 cut(s) | 405 |
| AfaI | GTAC | 3 cut(s) | 179, 445, 1065 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 142, 436, 478, 604, 913, 974 |
| AgeI | ACCGGT | 1 cut(s) | 193 |
| AgsI | TTSAA | 6 cut(s) | 91, 241, 274, 392, 574, 772 |
| AjnI | CCWGG | 4 cut(s) | 96, 229, 759, 931 |
| AluBI | AGCT | 6 cut(s) | 356, 508, 676, 883, 998, 1119 |
| AluI | AGCT | 6 cut(s) | 356, 508, 676, 883, 998, 1119 |
| Alw21I | GWGCWC | 4 cut(s) | 109, 193, 673, 1088 |
| Alw26I | GTCTC | 1 cut(s) | 310 |
| Alw44I | GTGCAC | 2 cut(s) | 189, 669 |
| AlwI | GGATC | 2 cut(s) | 153, 519 |
| Ama87I | CYCGRG | 1 cut(s) | 1096 |
| Aor13HI | TCCGGA | 1 cut(s) | 266 |
| AoxI | GGCC | 1 cut(s) | 1015 |
| ApaLI | GTGCAC | 2 cut(s) | 189, 669 |
| ApeKI | GCWGC | 3 cut(s) | 35, 475, 995 |
| ApoI | RAATTY | 3 cut(s) | 394, 818, 1136 |
| AsiGI | ACCGGT | 1 cut(s) | 193 |
| AspLEI | GCGC | 1 cut(s) | 712 |
| AspS9I | GGNCC | 5 cut(s) | 170, 264, 655, 715, 1029 |
| AsuC2I | CCSGG | 1 cut(s) | 590 |
| AsuHPI | GGTGA | 3 cut(s) | 208, 783, 889 |
| AsuNHI | GCTAGC | 1 cut(s) | 4 |
| AvaI | CYCGRG | 1 cut(s) | 1096 |
| AvaII | GGWCC | 5 cut(s) | 170, 264, 655, 715, 1029 |
| AxyI | CCTNAGG | 1 cut(s) | 137 |
| BaeGI | GKGCMC | 3 cut(s) | 193, 673, 980 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 772, 804 |
| BauI | CACGAG | 2 cut(s) | 311, 434 |
| Bbv12I | GWGCWC | 4 cut(s) | 109, 193, 673, 1088 |
| BbvI | GCAGC | 3 cut(s) | 22, 462, 1007 |
| BccI | CCATC | 4 cut(s) | 74, 209, 448, 827 |
| BceAI | ACGGC | 1 cut(s) | 36 |
| BciT130I | CCWGG | 4 cut(s) | 98, 231, 761, 933 |
| BcnI | CCSGG | 1 cut(s) | 590 |
| BcoDI | GTCTC | 1 cut(s) | 310 |
| BfaI | CTAG | 3 cut(s) | 5, 1110, 1116 |
| BfmI | CTRYAG | 1 cut(s) | 476 |
| BglII | AGATCT | 1 cut(s) | 315 |
| BisI | GCNGC | 3 cut(s) | 36, 476, 996 |
| BlsI | GCNGC | 3 cut(s) | 37, 477, 997 |
| Bme1390I | CCNGG | 5 cut(s) | 98, 231, 590, 761, 933 |
| Bme18I | GGWCC | 5 cut(s) | 170, 264, 655, 715, 1029 |
| BmeT110I | CYCGRG | 1 cut(s) | 1096 |
| BmgT120I | GGNCC | 5 cut(s) | 170, 264, 655, 715, 1029 |
| BmiI | GGNNCC | 4 cut(s) | 228, 265, 717, 1030 |
| BmrFI | CCNGG | 5 cut(s) | 98, 231, 590, 761, 933 |
| BmrI | ACTGGG | 2 cut(s) | 457, 901 |
| BmsI | GCATC | 1 cut(s) | 954 |
| BmtI | GCTAGC | 1 cut(s) | 8 |
| BmuI | ACTGGG | 2 cut(s) | 457, 901 |
| BpuEI | CTTGAG | 1 cut(s) | 860 |
| BpuMI | CCSGG | 1 cut(s) | 590 |
| BsaHI | GRCGYC | 1 cut(s) | 405 |
| BsaJI | CCNNGG | 3 cut(s) | 173, 588, 759 |
| BsaWI | WCCGGW | 2 cut(s) | 193, 266 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 302, 332 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 142, 436, 478, 604, 913, 974 |
| Bse118I | RCCGGY | 3 cut(s) | 193, 285, 471 |
| Bse1I | ACTGG | 3 cut(s) | 463, 609, 907 |
| Bse21I | CCTNAGG | 1 cut(s) | 137 |
| BseAI | TCCGGA | 1 cut(s) | 266 |
| BseBI | CCWGG | 4 cut(s) | 98, 231, 761, 933 |
| BseDI | CCNNGG | 3 cut(s) | 173, 588, 759 |
| BseGI | GGATG | 4 cut(s) | 278, 459, 487, 637 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 142, 436, 478, 604, 913, 974 |
| BseMII | CTCAG | 2 cut(s) | 151, 678 |
| BseNI | ACTGG | 3 cut(s) | 463, 609, 907 |
| BseRI | GAGGAG | 2 cut(s) | 452, 1088 |
| BseSI | GKGCMC | 3 cut(s) | 193, 673, 980 |
| BseXI | GCAGC | 3 cut(s) | 22, 462, 1007 |
| Bsh1236I | CGCG | 1 cut(s) | 303 |
| BshFI | GGCC | 1 cut(s) | 1017 |
| BshTI | ACCGGT | 1 cut(s) | 193 |
| BsiHKAI | GWGCWC | 4 cut(s) | 109, 193, 673, 1088 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1096 |
| BsiSI | CCGG | 6 cut(s) | 194, 267, 286, 451, 472, 590 |
| BslFI | GGGAC | 3 cut(s) | 574, 701, 742 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 142, 436, 478, 604, 913, 974 |
| BsmAI | GTCTC | 1 cut(s) | 310 |
| BsmBI | CGTCTC | 1 cut(s) | 310 |
| BsmFI | GGGAC | 3 cut(s) | 574, 701, 742 |
| BsnI | GGCC | 1 cut(s) | 1017 |
| BsoBI | CYCGRG | 1 cut(s) | 1096 |
| Bsp1286I | GDGCHC | 5 cut(s) | 109, 193, 673, 980, 1088 |
| Bsp13I | TCCGGA | 1 cut(s) | 266 |
| Bsp143I | GATC | 3 cut(s) | 145, 315, 511 |
| BspACI | CCGC | 3 cut(s) | 283, 953, 974 |
| BspANI | GGCC | 1 cut(s) | 1017 |
| BspCNI | CTCAG | 2 cut(s) | 150, 679 |
| BspEI | TCCGGA | 1 cut(s) | 266 |
| BspFNI | CGCG | 1 cut(s) | 303 |
| BspLI | GGNNCC | 4 cut(s) | 228, 265, 717, 1030 |
| BspMAI | CTGCAG | 1 cut(s) | 480 |
| BspOI | GCTAGC | 1 cut(s) | 8 |
| BspPI | GGATC | 2 cut(s) | 153, 519 |
| BsrFI | RCCGGY | 3 cut(s) | 193, 285, 471 |
| BsrI | ACTGG | 3 cut(s) | 463, 609, 907 |
| BssAI | RCCGGY | 3 cut(s) | 193, 285, 471 |
| BssECI | CCNNGG | 3 cut(s) | 173, 588, 759 |
| BssMI | GATC | 3 cut(s) | 145, 315, 511 |
| BssNI | GRCGYC | 1 cut(s) | 405 |
| BssSI | CACGAG | 2 cut(s) | 311, 434 |
| BssT1I | CCWWGG | 1 cut(s) | 173 |
| Bst2BI | CACGAG | 2 cut(s) | 311, 434 |
| Bst2UI | CCWGG | 4 cut(s) | 98, 231, 761, 933 |
| Bst4CI | ACNGT | 2 cut(s) | 30, 795 |
| Bst6I | CTCTTC | 2 cut(s) | 259, 1004 |
| BstACI | GRCGYC | 1 cut(s) | 405 |
| BstC8I | GCNNGC | 7 cut(s) | 6, 287, 610, 863, 941, 951, 976 |
| BstDEI | CTNAG | 3 cut(s) | 137, 627, 687 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 140, 434 |
| BstF5I | GGATG | 4 cut(s) | 278, 459, 487, 637 |
| BstFNI | CGCG | 1 cut(s) | 303 |
| BstHHI | GCGC | 1 cut(s) | 712 |
| BstKTI | GATC | 3 cut(s) | 148, 318, 514 |
| BstMAI | GTCTC | 1 cut(s) | 310 |
| BstMBI | GATC | 3 cut(s) | 145, 315, 511 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 10, 233, 484, 514, 959, 1125 |
| BstNI | CCWGG | 4 cut(s) | 98, 231, 761, 933 |
| BstNSI | RCATGY | 3 cut(s) | 450, 550, 943 |
| BstSCI | CCNGG | 5 cut(s) | 96, 229, 588, 759, 931 |
| BstSFI | CTRYAG | 1 cut(s) | 476 |
| BstSLI | GKGCMC | 3 cut(s) | 193, 673, 980 |
| BstUI | CGCG | 1 cut(s) | 303 |
| BstV1I | GCAGC | 3 cut(s) | 22, 462, 1007 |
| BstX2I | RGATCY | 2 cut(s) | 315, 511 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1025 |
| BstYI | RGATCY | 2 cut(s) | 315, 511 |
| Bsu36I | CCTNAGG | 1 cut(s) | 137 |
| BsuRI | GGCC | 1 cut(s) | 1017 |
| BtgZI | GCGATG | 1 cut(s) | 977 |
| BtsCI | GGATG | 4 cut(s) | 278, 459, 487, 637 |
| BtsI | GCAGTG | 1 cut(s) | 673 |
| BtsIMutI | CAGTG | 2 cut(s) | 602, 673 |
| Cac8I | GCNNGC | 7 cut(s) | 6, 287, 610, 863, 941, 951, 976 |
| CfoI | GCGC | 1 cut(s) | 712 |
| Cfr10I | RCCGGY | 3 cut(s) | 193, 285, 471 |
| Cfr13I | GGNCC | 5 cut(s) | 170, 264, 655, 715, 1029 |
| CseI | GACGC | 2 cut(s) | 292, 394 |
| Csp6I | GTAC | 3 cut(s) | 178, 444, 1064 |
| CspAI | ACCGGT | 1 cut(s) | 193 |
| CviAII | CATG | 3 cut(s) | 447, 547, 940 |
| CviQI | GTAC | 3 cut(s) | 178, 444, 1064 |
| DdeI | CTNAG | 3 cut(s) | 137, 627, 687 |
| DpnI | GATC | 3 cut(s) | 147, 317, 513 |
| DpnII | GATC | 3 cut(s) | 145, 315, 511 |
| Eam1104I | CTCTTC | 2 cut(s) | 259, 1004 |
| EarI | CTCTTC | 2 cut(s) | 259, 1004 |
| Eco130I | CCWWGG | 1 cut(s) | 173 |
| Eco47I | GGWCC | 5 cut(s) | 170, 264, 655, 715, 1029 |
| Eco57I | CTGAAG | 2 cut(s) | 43, 368 |
| Eco81I | CCTNAGG | 1 cut(s) | 137 |
| Eco88I | CYCGRG | 1 cut(s) | 1096 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 140, 434 |
| EcoO109I | RGGNCCY | 1 cut(s) | 170 |
| EcoRII | CCWGG | 4 cut(s) | 96, 229, 759, 931 |
| EcoT14I | CCWWGG | 1 cut(s) | 173 |
| ErhI | CCWWGG | 1 cut(s) | 173 |
| Esp3I | CGTCTC | 1 cut(s) | 310 |
| FaeI | CATG | 3 cut(s) | 450, 550, 943 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 314, 346 |
| FaqI | GGGAC | 3 cut(s) | 574, 701, 742 |
| FatI | CATG | 3 cut(s) | 446, 546, 939 |
| FauI | CCCGC | 2 cut(s) | 290, 967 |
| FblI | GTMKAC | 1 cut(s) | 781 |
| Fnu4HI | GCNGC | 3 cut(s) | 36, 476, 996 |
| FokI | GGATG | 4 cut(s) | 265, 466, 494, 644 |
| Fsp4HI | GCNGC | 3 cut(s) | 36, 476, 996 |
| FspBI | CTAG | 3 cut(s) | 5, 1110, 1116 |
| GlaI | GCGC | 1 cut(s) | 711 |
| GluI | GCNGC | 3 cut(s) | 36, 476, 996 |
| HaeIII | GGCC | 1 cut(s) | 1017 |
| HapII | CCGG | 6 cut(s) | 194, 267, 286, 451, 472, 590 |
| HgaI | GACGC | 2 cut(s) | 292, 394 |
| HhaI | GCGC | 1 cut(s) | 712 |
| Hin1I | GRCGYC | 1 cut(s) | 405 |
| Hin1II | CATG | 3 cut(s) | 450, 550, 943 |
| Hin6I | GCGC | 1 cut(s) | 710 |
| HinP1I | GCGC | 1 cut(s) | 710 |
| HinfI | GANTC | 4 cut(s) | 247, 755, 764, 1042 |
| HpaII | CCGG | 6 cut(s) | 194, 267, 286, 451, 472, 590 |
| HphI | GGTGA | 3 cut(s) | 208, 783, 889 |
| Hpy166II | GTNNAC | 4 cut(s) | 191, 246, 671, 782 |
| Hpy188I | TCNGA | 7 cut(s) | 18, 43, 348, 414, 469, 688, 870 |
| Hpy188III | TCNNGA | 7 cut(s) | 61, 77, 139, 267, 434, 1032, 1098 |
| Hpy8I | GTNNAC | 4 cut(s) | 191, 246, 671, 782 |
| HpyAV | CCTTC | 6 cut(s) | 136, 440, 491, 668, 795, 841 |
| HpyCH4III | ACNGT | 2 cut(s) | 30, 795 |
| HpyCH4IV | ACGT | 1 cut(s) | 103 |
| HpyCH4V | TGCA | 4 cut(s) | 191, 478, 539, 671 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 10, 233, 484, 514, 959, 1125 |
| HpyF3I | CTNAG | 3 cut(s) | 137, 627, 687 |
| HpySE526I | ACGT | 1 cut(s) | 103 |
| Hsp92I | GRCGYC | 1 cut(s) | 405 |
| Hsp92II | CATG | 3 cut(s) | 450, 550, 943 |
| HspAI | GCGC | 1 cut(s) | 710 |
| Kpn2I | TCCGGA | 1 cut(s) | 266 |
| KroI | GCCGGC | 1 cut(s) | 285 |
| KroNI | GCCGGC | 1 cut(s) | 287 |
| Kzo9I | GATC | 3 cut(s) | 145, 315, 511 |
| LmnI | GCTCC | 2 cut(s) | 232, 888 |
| Lsp1109I | GCAGC | 3 cut(s) | 22, 462, 1007 |
| LweI | GCATC | 1 cut(s) | 954 |
| MaeI | CTAG | 3 cut(s) | 5, 1110, 1116 |
| MaeII | ACGT | 1 cut(s) | 103 |
| MaeIII | GTNAC | 1 cut(s) | 634 |
| MalI | GATC | 3 cut(s) | 147, 317, 513 |
| MboI | GATC | 3 cut(s) | 145, 315, 511 |
| MboII | GAAGA | 4 cut(s) | 246, 653, 780, 1021 |
| MflI | RGATCY | 2 cut(s) | 315, 511 |
| MhlI | GDGCHC | 5 cut(s) | 109, 193, 673, 980, 1088 |
| MluCI | AATT | 3 cut(s) | 394, 818, 1136 |
| MlyI | GAGTC | 2 cut(s) | 241, 764 |
| MmeI | TCCRAC | 3 cut(s) | 66, 73, 272 |
| MreI | CGCCGGCG | 1 cut(s) | 285 |
| MroI | TCCGGA | 1 cut(s) | 266 |
| MroNI | GCCGGC | 1 cut(s) | 285 |
| MseI | TTAA | 4 cut(s) | 183, 425, 699, 1121 |
| MslI | CAYNNNNRTG | 1 cut(s) | 944 |
| MspI | CCGG | 6 cut(s) | 194, 267, 286, 451, 472, 590 |
| MspR9I | CCNGG | 5 cut(s) | 98, 231, 590, 761, 933 |
| MvaI | CCWGG | 4 cut(s) | 98, 231, 761, 933 |
| MvnI | CGCG | 1 cut(s) | 303 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 10, 233, 484, 514, 959, 1125 |
| NaeI | GCCGGC | 1 cut(s) | 287 |
| NciI | CCSGG | 1 cut(s) | 590 |
| NdeII | GATC | 3 cut(s) | 145, 315, 511 |
| NgoMIV | GCCGGC | 1 cut(s) | 285 |
| NheI | GCTAGC | 1 cut(s) | 4 |
| NlaIII | CATG | 3 cut(s) | 450, 550, 943 |
| NlaIV | GGNNCC | 4 cut(s) | 228, 265, 717, 1030 |
| NmuCI | GTSAC | 1 cut(s) | 634 |
| NspI | RCATGY | 3 cut(s) | 450, 550, 943 |
| PaeI | GCATGC | 1 cut(s) | 943 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 26 |
| PdiI | GCCGGC | 1 cut(s) | 287 |
| PfeI | GAWTC | 2 cut(s) | 764, 1042 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 913 |
| PfoI | TCCNGGA | 1 cut(s) | 96 |
| PinAI | ACCGGT | 1 cut(s) | 193 |
| PkrI | GCNGC | 3 cut(s) | 37, 477, 997 |
| PleI | GAGTC | 2 cut(s) | 241, 763 |
| PpsI | GAGTC | 2 cut(s) | 241, 763 |
| PpuMI | RGGWCCY | 1 cut(s) | 170 |
| Psp5II | RGGWCCY | 1 cut(s) | 170 |
| Psp6I | CCWGG | 4 cut(s) | 96, 229, 759, 931 |
| PspGI | CCWGG | 4 cut(s) | 96, 229, 759, 931 |
| PspN4I | GGNNCC | 4 cut(s) | 228, 265, 717, 1030 |
| PspPI | GGNCC | 5 cut(s) | 170, 264, 655, 715, 1029 |
| PspPPI | RGGWCCY | 1 cut(s) | 170 |
| PstI | CTGCAG | 1 cut(s) | 480 |
| PsuI | RGATCY | 2 cut(s) | 315, 511 |
| RsaI | GTAC | 3 cut(s) | 179, 445, 1065 |
| RsaNI | GTAC | 3 cut(s) | 178, 444, 1064 |
| RseI | CAYNNNNRTG | 1 cut(s) | 944 |
| SaqAI | TTAA | 4 cut(s) | 183, 425, 699, 1121 |
| SatI | GCNGC | 3 cut(s) | 36, 476, 996 |
| Sau3AI | GATC | 3 cut(s) | 145, 315, 511 |
| Sau96I | GGNCC | 5 cut(s) | 170, 264, 655, 715, 1029 |
| SchI | GAGTC | 2 cut(s) | 241, 764 |
| ScrFI | CCNGG | 5 cut(s) | 98, 231, 590, 761, 933 |
| SduI | GDGCHC | 5 cut(s) | 109, 193, 673, 980, 1088 |
| SfaNI | GCATC | 1 cut(s) | 954 |
| SfcI | CTRYAG | 1 cut(s) | 476 |
| SgrAI | CRCCGGYG | 2 cut(s) | 193, 285 |
| SinI | GGWCC | 5 cut(s) | 170, 264, 655, 715, 1029 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 944 |
| SmlI | CTYRAG | 1 cut(s) | 839 |
| SmoI | CTYRAG | 1 cut(s) | 839 |
| SphI | GCATGC | 1 cut(s) | 943 |
| Sse9I | AATT | 3 cut(s) | 394, 818, 1136 |
| SsiI | CCGC | 3 cut(s) | 283, 953, 974 |
| SspMI | CTAG | 3 cut(s) | 5, 1110, 1116 |
| StyD4I | CCNGG | 5 cut(s) | 96, 229, 588, 759, 931 |
| StyI | CCWWGG | 1 cut(s) | 173 |
| TaaI | ACNGT | 2 cut(s) | 30, 795 |
| TaiI | ACGT | 1 cut(s) | 106 |
| TaqI | TCGA | 1 cut(s) | 148 |
| TaqII | GACCGA | 1 cut(s) | 643 |
| TasI | AATT | 3 cut(s) | 394, 818, 1136 |
| TfiI | GAWTC | 2 cut(s) | 764, 1042 |
| Tru1I | TTAA | 4 cut(s) | 183, 425, 699, 1121 |
| Tru9I | TTAA | 4 cut(s) | 183, 425, 699, 1121 |
| TscAI | CASTG | 2 cut(s) | 609, 673 |
| TseFI | GTSAC | 1 cut(s) | 634 |
| TseI | GCWGC | 3 cut(s) | 35, 475, 995 |
| Tsp45I | GTSAC | 1 cut(s) | 634 |
| TspDTI | ATGAA | 3 cut(s) | 506, 518, 741 |
| TspRI | CASTG | 2 cut(s) | 609, 673 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 913 |
| VneI | GTGCAC | 2 cut(s) | 189, 669 |
| VpaK11BI | GGWCC | 5 cut(s) | 170, 264, 655, 715, 1029 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 140, 434 |
| XapI | RAATTY | 3 cut(s) | 394, 818, 1136 |
| XceI | RCATGY | 3 cut(s) | 450, 550, 943 |
| XmiI | GTMKAC | 1 cut(s) | 781 |
| XspI | CTAG | 3 cut(s) | 5, 1110, 1116 |