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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 374 |
| AciI | CCGC | 3 cut(s) | 91, 111, 271 |
| AclWI | GGATC | 3 cut(s) | 155, 242, 440 |
| AfaI | GTAC | 2 cut(s) | 203, 502 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 166, 575 |
| AgsI | TTSAA | 1 cut(s) | 211 |
| AjnI | CCWGG | 1 cut(s) | 448 |
| AluBI | AGCT | 1 cut(s) | 479 |
| AluI | AGCT | 1 cut(s) | 479 |
| AlwI | GGATC | 3 cut(s) | 155, 242, 440 |
| AoxI | GGCC | 1 cut(s) | 239 |
| ApeKI | GCWGC | 3 cut(s) | 88, 521, 572 |
| AseI | ATTAAT | 1 cut(s) | 83 |
| AsuC2I | CCSGG | 1 cut(s) | 544 |
| AsuHPI | GGTGA | 3 cut(s) | 484, 497, 590 |
| BanI | GGYRCC | 1 cut(s) | 374 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 344, 376 |
| BauI | CACGAG | 1 cut(s) | 69 |
| BbsI | GAAGAC | 1 cut(s) | 109 |
| BbvI | GCAGC | 3 cut(s) | 100, 508, 559 |
| BccI | CCATC | 3 cut(s) | 37, 476, 581 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 110, 120, 144, 154 |
| BciT130I | CCWGG | 1 cut(s) | 450 |
| BcnI | CCSGG | 1 cut(s) | 544 |
| BfaI | CTAG | 1 cut(s) | 171 |
| BisI | GCNGC | 3 cut(s) | 89, 522, 573 |
| BlsI | GCNGC | 3 cut(s) | 90, 523, 574 |
| BmcAI | AGTACT | 1 cut(s) | 502 |
| Bme1390I | CCNGG | 2 cut(s) | 450, 544 |
| BmiI | GGNNCC | 2 cut(s) | 49, 376 |
| BmrFI | CCNGG | 2 cut(s) | 450, 544 |
| BmsI | GCATC | 3 cut(s) | 140, 508, 538 |
| BpiI | GAAGAC | 1 cut(s) | 109 |
| BpmI | CTGGAG | 1 cut(s) | 311 |
| BpuMI | CCSGG | 1 cut(s) | 544 |
| BsaBI | GATNNNNATC | 1 cut(s) | 390 |
| BsaJI | CCNNGG | 2 cut(s) | 449, 543 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 166, 575 |
| Bse118I | RCCGGY | 1 cut(s) | 237 |
| Bse1I | ACTGG | 1 cut(s) | 294 |
| Bse8I | GATNNNNATC | 1 cut(s) | 390 |
| BseBI | CCWGG | 1 cut(s) | 450 |
| BseDI | CCNNGG | 2 cut(s) | 449, 543 |
| BseGI | GGATG | 4 cut(s) | 131, 463, 553, 562 |
| BseJI | GATNNNNATC | 1 cut(s) | 390 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 166, 575 |
| BseNI | ACTGG | 1 cut(s) | 294 |
| BseXI | GCAGC | 3 cut(s) | 100, 508, 559 |
| BseYI | CCCAGC | 1 cut(s) | 63 |
| BshFI | GGCC | 1 cut(s) | 241 |
| BshNI | GGYRCC | 1 cut(s) | 374 |
| BsiSI | CCGG | 2 cut(s) | 238, 543 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 166, 575 |
| BsmI | GAATGC | 1 cut(s) | 217 |
| BsnI | GGCC | 1 cut(s) | 241 |
| Bsp143I | GATC | 4 cut(s) | 147, 247, 364, 445 |
| BspACI | CCGC | 3 cut(s) | 91, 111, 271 |
| BspANI | GGCC | 1 cut(s) | 241 |
| BspHI | TCATGA | 2 cut(s) | 394, 514 |
| BspLI | GGNNCC | 2 cut(s) | 49, 376 |
| BspPI | GGATC | 3 cut(s) | 155, 242, 440 |
| BspT107I | GGYRCC | 1 cut(s) | 374 |
| BsrFI | RCCGGY | 1 cut(s) | 237 |
| BsrI | ACTGG | 1 cut(s) | 294 |
| BssAI | RCCGGY | 1 cut(s) | 237 |
| BssECI | CCNNGG | 2 cut(s) | 449, 543 |
| BssMI | GATC | 4 cut(s) | 147, 247, 364, 445 |
| BssSI | CACGAG | 1 cut(s) | 69 |
| Bst2BI | CACGAG | 1 cut(s) | 69 |
| Bst2UI | CCWGG | 1 cut(s) | 450 |
| BstC8I | GCNNGC | 3 cut(s) | 12, 129, 416 |
| BstEII | GGTNACC | 1 cut(s) | 590 |
| BstF5I | GGATG | 4 cut(s) | 131, 463, 553, 562 |
| BstKTI | GATC | 4 cut(s) | 150, 250, 367, 448 |
| BstMBI | GATC | 4 cut(s) | 147, 247, 364, 445 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 190 |
| BstNI | CCWGG | 1 cut(s) | 450 |
| BstNSI | RCATGY | 1 cut(s) | 131 |
| BstPI | GGTNACC | 1 cut(s) | 590 |
| BstSCI | CCNGG | 2 cut(s) | 448, 542 |
| BstV1I | GCAGC | 3 cut(s) | 100, 508, 559 |
| BstV2I | GAAGAC | 1 cut(s) | 109 |
| BstX2I | RGATCY | 1 cut(s) | 147 |
| BstYI | RGATCY | 1 cut(s) | 147 |
| BsuRI | GGCC | 1 cut(s) | 241 |
| BtsCI | GGATG | 4 cut(s) | 131, 463, 553, 562 |
| Cac8I | GCNNGC | 3 cut(s) | 12, 129, 416 |
| CciI | TCATGA | 2 cut(s) | 394, 514 |
| Cfr10I | RCCGGY | 1 cut(s) | 237 |
| Csp6I | GTAC | 2 cut(s) | 202, 501 |
| CviAII | CATG | 4 cut(s) | 128, 144, 395, 515 |
| CviJI | RGCY | 6 cut(s) | 48, 67, 170, 241, 296, 479 |
| CviKI_1 | RGCY | 6 cut(s) | 48, 67, 170, 241, 296, 479 |
| CviQI | GTAC | 2 cut(s) | 202, 501 |
| DpnI | GATC | 4 cut(s) | 149, 249, 366, 447 |
| DpnII | GATC | 4 cut(s) | 147, 247, 364, 445 |
| Eco91I | GGTNACC | 1 cut(s) | 590 |
| EcoO65I | GGTNACC | 1 cut(s) | 590 |
| EcoRII | CCWGG | 1 cut(s) | 448 |
| EcoT22I | ATGCAT | 1 cut(s) | 133 |
| FaeI | CATG | 4 cut(s) | 131, 147, 398, 518 |
| FatI | CATG | 4 cut(s) | 127, 143, 394, 514 |
| FauI | CCCGC | 1 cut(s) | 118 |
| FauNDI | CATATG | 1 cut(s) | 345 |
| Fnu4HI | GCNGC | 3 cut(s) | 89, 522, 573 |
| FokI | GGATG | 4 cut(s) | 118, 470, 560, 569 |
| Fsp4HI | GCNGC | 3 cut(s) | 89, 522, 573 |
| FspBI | CTAG | 1 cut(s) | 171 |
| GluI | GCNGC | 3 cut(s) | 89, 522, 573 |
| GsaI | CCCAGC | 1 cut(s) | 67 |
| GsuI | CTGGAG | 1 cut(s) | 311 |
| HaeIII | GGCC | 1 cut(s) | 241 |
| HapII | CCGG | 2 cut(s) | 238, 543 |
| Hin1II | CATG | 4 cut(s) | 131, 147, 398, 518 |
| HincII | GTYRAC | 1 cut(s) | 235 |
| HindII | GTYRAC | 1 cut(s) | 235 |
| HinfI | GANTC | 1 cut(s) | 581 |
| HpaII | CCGG | 2 cut(s) | 238, 543 |
| HphI | GGTGA | 3 cut(s) | 484, 497, 590 |
| Hpy166II | GTNNAC | 2 cut(s) | 235, 433 |
| Hpy188I | TCNGA | 2 cut(s) | 252, 586 |
| Hpy188III | TCNNGA | 3 cut(s) | 395, 434, 515 |
| Hpy8I | GTNNAC | 2 cut(s) | 235, 433 |
| Hpy99I | CGWCG | 2 cut(s) | 281, 446 |
| HpyAV | CCTTC | 2 cut(s) | 388, 488 |
| HpyCH4IV | ACGT | 1 cut(s) | 276 |
| HpyCH4V | TGCA | 4 cut(s) | 88, 127, 131, 418 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 190 |
| HpySE526I | ACGT | 1 cut(s) | 276 |
| Hsp92II | CATG | 4 cut(s) | 131, 147, 398, 518 |
| Kzo9I | GATC | 4 cut(s) | 147, 247, 364, 445 |
| LmnI | GCTCC | 1 cut(s) | 53 |
| Lsp1109I | GCAGC | 3 cut(s) | 100, 508, 559 |
| LweI | GCATC | 3 cut(s) | 140, 508, 538 |
| MaeI | CTAG | 1 cut(s) | 171 |
| MaeII | ACGT | 1 cut(s) | 276 |
| MaeIII | GTNAC | 2 cut(s) | 266, 590 |
| MalI | GATC | 4 cut(s) | 149, 249, 366, 447 |
| MboI | GATC | 4 cut(s) | 147, 247, 364, 445 |
| MboII | GAAGA | 5 cut(s) | 109, 293, 296, 352, 542 |
| MflI | RGATCY | 1 cut(s) | 147 |
| MluCI | AATT | 2 cut(s) | 22, 206 |
| MmeI | TCCRAC | 4 cut(s) | 124, 205, 275, 435 |
| MnlI | CCTC | 6 cut(s) | 160, 167, 286, 336, 463, 576 |
| Mph1103I | ATGCAT | 1 cut(s) | 133 |
| MseI | TTAA | 1 cut(s) | 83 |
| MspA1I | CMGCKG | 2 cut(s) | 91, 113 |
| MspI | CCGG | 2 cut(s) | 238, 543 |
| MspR9I | CCNGG | 2 cut(s) | 450, 544 |
| Mva1269I | GAATGC | 1 cut(s) | 217 |
| MvaI | CCWGG | 1 cut(s) | 450 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 190 |
| NciI | CCSGG | 1 cut(s) | 544 |
| NdeI | CATATG | 1 cut(s) | 345 |
| NdeII | GATC | 4 cut(s) | 147, 247, 364, 445 |
| NlaIII | CATG | 4 cut(s) | 131, 147, 398, 518 |
| NlaIV | GGNNCC | 2 cut(s) | 49, 376 |
| NsiI | ATGCAT | 1 cut(s) | 133 |
| NspI | RCATGY | 1 cut(s) | 131 |
| PaeI | GCATGC | 1 cut(s) | 131 |
| PagI | TCATGA | 2 cut(s) | 394, 514 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 441 |
| PctI | GAATGC | 1 cut(s) | 217 |
| PfeI | GAWTC | 1 cut(s) | 581 |
| PkrI | GCNGC | 3 cut(s) | 90, 523, 574 |
| PshBI | ATTAAT | 1 cut(s) | 83 |
| Psp6I | CCWGG | 1 cut(s) | 448 |
| PspEI | GGTNACC | 1 cut(s) | 590 |
| PspFI | CCCAGC | 1 cut(s) | 63 |
| PspGI | CCWGG | 1 cut(s) | 448 |
| PspN4I | GGNNCC | 2 cut(s) | 49, 376 |
| PsuI | RGATCY | 1 cut(s) | 147 |
| RsaI | GTAC | 2 cut(s) | 203, 502 |
| RsaNI | GTAC | 2 cut(s) | 202, 501 |
| SaqAI | TTAA | 1 cut(s) | 83 |
| SatI | GCNGC | 3 cut(s) | 89, 522, 573 |
| Sau3AI | GATC | 4 cut(s) | 147, 247, 364, 445 |
| ScaI | AGTACT | 1 cut(s) | 502 |
| ScrFI | CCNGG | 2 cut(s) | 450, 544 |
| SetI | ASST | 5 cut(s) | 106, 279, 380, 474, 481 |
| SfaNI | GCATC | 3 cut(s) | 140, 508, 538 |
| SphI | GCATGC | 1 cut(s) | 131 |
| Sse9I | AATT | 2 cut(s) | 22, 206 |
| SsiI | CCGC | 3 cut(s) | 91, 111, 271 |
| SspI | AATATT | 1 cut(s) | 197 |
| SspMI | CTAG | 1 cut(s) | 171 |
| StyD4I | CCNGG | 2 cut(s) | 448, 542 |
| TaiI | ACGT | 1 cut(s) | 279 |
| TaqI | TCGA | 3 cut(s) | 120, 279, 363 |
| TasI | AATT | 2 cut(s) | 22, 206 |
| TatI | WGTACW | 1 cut(s) | 500 |
| TfiI | GAWTC | 1 cut(s) | 581 |
| Tru1I | TTAA | 1 cut(s) | 83 |
| Tru9I | TTAA | 1 cut(s) | 83 |
| TseI | GCWGC | 3 cut(s) | 88, 521, 572 |
| TspDTI | ATGAA | 3 cut(s) | 411, 503, 543 |
| TspGWI | ACGGA | 1 cut(s) | 506 |
| VspI | ATTAAT | 1 cut(s) | 83 |
| XceI | RCATGY | 1 cut(s) | 131 |
| XspI | CTAG | 1 cut(s) | 171 |
| ZrmI | AGTACT | 1 cut(s) | 502 |
| Zsp2I | ATGCAT | 1 cut(s) | 133 |