Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 103, 322 |
| AccII | CGCG | 2 cut(s) | 79, 276 |
| AciI | CCGC | 3 cut(s) | 98, 193, 462 |
| AclWI | GGATC | 2 cut(s) | 350, 363 |
| AcyI | GRCGYC | 2 cut(s) | 104, 152 |
| AfaI | GTAC | 2 cut(s) | 291, 311 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 114, 202 |
| AgeI | ACCGGT | 1 cut(s) | 160 |
| AgsI | TTSAA | 2 cut(s) | 316, 338 |
| AjnI | CCWGG | 4 cut(s) | 66, 318, 455, 467 |
| AluBI | AGCT | 2 cut(s) | 30, 178 |
| AluI | AGCT | 2 cut(s) | 30, 178 |
| Alw21I | GWGCWC | 2 cut(s) | 180, 402 |
| Alw44I | GTGCAC | 1 cut(s) | 398 |
| AlwI | GGATC | 2 cut(s) | 350, 363 |
| AoxI | GGCC | 2 cut(s) | 236, 378 |
| ApaLI | GTGCAC | 1 cut(s) | 398 |
| ApeKI | GCWGC | 2 cut(s) | 35, 169 |
| AsiGI | ACCGGT | 1 cut(s) | 160 |
| AspLEI | GCGC | 3 cut(s) | 81, 106, 276 |
| AxyI | CCTNAGG | 1 cut(s) | 269 |
| BaeGI | GKGCMC | 1 cut(s) | 402 |
| BamHI | GGATCC | 1 cut(s) | 355 |
| BanI | GGYRCC | 2 cut(s) | 103, 322 |
| BanII | GRGCYC | 1 cut(s) | 180 |
| Bbv12I | GWGCWC | 2 cut(s) | 180, 402 |
| BbvI | GCAGC | 2 cut(s) | 47, 156 |
| BccI | CCATC | 1 cut(s) | 206 |
| BceAI | ACGGC | 3 cut(s) | 111, 131, 251 |
| BciT130I | CCWGG | 4 cut(s) | 68, 320, 457, 469 |
| BfaI | CTAG | 1 cut(s) | 230 |
| BfoI | RGCGCY | 1 cut(s) | 107 |
| BisI | GCNGC | 2 cut(s) | 36, 170 |
| BlsI | GCNGC | 2 cut(s) | 37, 171 |
| BmcAI | AGTACT | 1 cut(s) | 291 |
| Bme1390I | CCNGG | 4 cut(s) | 68, 320, 457, 469 |
| BmiI | GGNNCC | 4 cut(s) | 105, 324, 357, 466 |
| BmrFI | CCNGG | 4 cut(s) | 68, 320, 457, 469 |
| BmrI | ACTGGG | 1 cut(s) | 181 |
| BmuI | ACTGGG | 1 cut(s) | 181 |
| BsaHI | GRCGYC | 2 cut(s) | 104, 152 |
| BsaJI | CCNNGG | 2 cut(s) | 305, 456 |
| BsaWI | WCCGGW | 1 cut(s) | 160 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 114, 202 |
| Bse118I | RCCGGY | 1 cut(s) | 160 |
| Bse1I | ACTGG | 2 cut(s) | 91, 187 |
| Bse21I | CCTNAGG | 1 cut(s) | 269 |
| BseBI | CCWGG | 4 cut(s) | 68, 320, 457, 469 |
| BseDI | CCNNGG | 2 cut(s) | 305, 456 |
| BseGI | GGATG | 2 cut(s) | 217, 411 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 114, 202 |
| BseMII | CTCAG | 1 cut(s) | 283 |
| BseNI | ACTGG | 2 cut(s) | 91, 187 |
| BseSI | GKGCMC | 1 cut(s) | 402 |
| BseXI | GCAGC | 2 cut(s) | 47, 156 |
| Bsh1236I | CGCG | 2 cut(s) | 79, 276 |
| BshFI | GGCC | 2 cut(s) | 238, 380 |
| BshNI | GGYRCC | 2 cut(s) | 103, 322 |
| BshTI | ACCGGT | 1 cut(s) | 160 |
| BsiHKAI | GWGCWC | 2 cut(s) | 180, 402 |
| BsiSI | CCGG | 1 cut(s) | 161 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 114, 202 |
| BsnI | GGCC | 2 cut(s) | 238, 380 |
| Bsp1286I | GDGCHC | 2 cut(s) | 180, 402 |
| Bsp143I | GATC | 2 cut(s) | 277, 355 |
| BspACI | CCGC | 3 cut(s) | 98, 193, 462 |
| BspANI | GGCC | 2 cut(s) | 238, 380 |
| BspCNI | CTCAG | 1 cut(s) | 282 |
| BspFNI | CGCG | 2 cut(s) | 79, 276 |
| BspLI | GGNNCC | 4 cut(s) | 105, 324, 357, 466 |
| BspPI | GGATC | 2 cut(s) | 350, 363 |
| BspQI | GCTCTTC | 1 cut(s) | 423 |
| BspT107I | GGYRCC | 2 cut(s) | 103, 322 |
| BsrFI | RCCGGY | 1 cut(s) | 160 |
| BsrI | ACTGG | 2 cut(s) | 91, 187 |
| BssAI | RCCGGY | 1 cut(s) | 160 |
| BssECI | CCNNGG | 2 cut(s) | 305, 456 |
| BssMI | GATC | 2 cut(s) | 277, 355 |
| BssNI | GRCGYC | 2 cut(s) | 104, 152 |
| BssT1I | CCWWGG | 1 cut(s) | 305 |
| Bst2UI | CCWGG | 4 cut(s) | 68, 320, 457, 469 |
| Bst4CI | ACNGT | 1 cut(s) | 370 |
| Bst6I | CTCTTC | 1 cut(s) | 423 |
| BstACI | GRCGYC | 2 cut(s) | 104, 152 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 32 |
| BstC8I | GCNNGC | 2 cut(s) | 28, 51 |
| BstDEI | CTNAG | 2 cut(s) | 6, 269 |
| BstF5I | GGATG | 2 cut(s) | 217, 411 |
| BstFNI | CGCG | 2 cut(s) | 79, 276 |
| BstH2I | RGCGCY | 1 cut(s) | 107 |
| BstHHI | GCGC | 3 cut(s) | 81, 106, 276 |
| BstKTI | GATC | 2 cut(s) | 280, 358 |
| BstMBI | GATC | 2 cut(s) | 277, 355 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 32, 175 |
| BstNI | CCWGG | 4 cut(s) | 68, 320, 457, 469 |
| BstSCI | CCNGG | 4 cut(s) | 66, 318, 455, 467 |
| BstSLI | GKGCMC | 1 cut(s) | 402 |
| BstUI | CGCG | 2 cut(s) | 79, 276 |
| BstV1I | GCAGC | 2 cut(s) | 47, 156 |
| BstX2I | RGATCY | 1 cut(s) | 355 |
| BstYI | RGATCY | 1 cut(s) | 355 |
| Bsu36I | CCTNAGG | 1 cut(s) | 269 |
| BsuRI | GGCC | 2 cut(s) | 238, 380 |
| BtsCI | GGATG | 2 cut(s) | 217, 411 |
| Cac8I | GCNNGC | 2 cut(s) | 28, 51 |
| CfoI | GCGC | 3 cut(s) | 81, 106, 276 |
| Cfr10I | RCCGGY | 1 cut(s) | 160 |
| CseI | GACGC | 3 cut(s) | 27, 55, 160 |
| Csp6I | GTAC | 2 cut(s) | 290, 310 |
| CspAI | ACCGGT | 1 cut(s) | 160 |
| CviAII | CATG | 3 cut(s) | 43, 197, 376 |
| CviJI | RGCY | 9 cut(s) | 30, 118, 140, 178, 238, 304, 380, 433, 455 |
| CviKI_1 | RGCY | 9 cut(s) | 30, 118, 140, 178, 238, 304, 380, 433, 455 |
| CviQI | GTAC | 2 cut(s) | 290, 310 |
| DdeI | CTNAG | 2 cut(s) | 6, 269 |
| DinI | GGCGCC | 1 cut(s) | 105 |
| DpnI | GATC | 2 cut(s) | 279, 357 |
| DpnII | GATC | 2 cut(s) | 277, 355 |
| Eam1104I | CTCTTC | 1 cut(s) | 423 |
| EarI | CTCTTC | 1 cut(s) | 423 |
| EciI | GGCGGA | 2 cut(s) | 182, 477 |
| Ecl136II | GAGCTC | 1 cut(s) | 178 |
| Eco130I | CCWWGG | 1 cut(s) | 305 |
| Eco24I | GRGCYC | 1 cut(s) | 180 |
| Eco32I | GATATC | 1 cut(s) | 64 |
| Eco53kI | GAGCTC | 1 cut(s) | 178 |
| Eco81I | CCTNAGG | 1 cut(s) | 269 |
| EcoICRI | GAGCTC | 1 cut(s) | 178 |
| EcoRII | CCWGG | 4 cut(s) | 66, 318, 455, 467 |
| EcoRV | GATATC | 1 cut(s) | 64 |
| EcoT14I | CCWWGG | 1 cut(s) | 305 |
| EcoT38I | GRGCYC | 1 cut(s) | 180 |
| EgeI | GGCGCC | 1 cut(s) | 105 |
| EheI | GGCGCC | 1 cut(s) | 105 |
| ErhI | CCWWGG | 1 cut(s) | 305 |
| FaeI | CATG | 3 cut(s) | 46, 200, 379 |
| FaiI | YATR | 5 cut(s) | 44, 198, 345, 377, 394 |
| FatI | CATG | 3 cut(s) | 42, 196, 375 |
| FauI | CCCGC | 1 cut(s) | 91 |
| Fnu4HI | GCNGC | 2 cut(s) | 36, 170 |
| FokI | GGATG | 2 cut(s) | 224, 398 |
| FriOI | GRGCYC | 1 cut(s) | 180 |
| Fsp4HI | GCNGC | 2 cut(s) | 36, 170 |
| FspBI | CTAG | 1 cut(s) | 230 |
| GlaI | GCGC | 3 cut(s) | 80, 105, 275 |
| GluI | GCNGC | 2 cut(s) | 36, 170 |
| HaeII | RGCGCY | 1 cut(s) | 107 |
| HaeIII | GGCC | 2 cut(s) | 238, 380 |
| HapII | CCGG | 1 cut(s) | 161 |
| HgaI | GACGC | 3 cut(s) | 27, 55, 160 |
| HhaI | GCGC | 3 cut(s) | 81, 106, 276 |
| Hin1I | GRCGYC | 2 cut(s) | 104, 152 |
| Hin1II | CATG | 3 cut(s) | 46, 200, 379 |
| Hin6I | GCGC | 3 cut(s) | 79, 104, 274 |
| HinP1I | GCGC | 3 cut(s) | 79, 104, 274 |
| HincII | GTYRAC | 1 cut(s) | 373 |
| HindII | GTYRAC | 1 cut(s) | 373 |
| HindIII | AAGCTT | 1 cut(s) | 28 |
| HpaII | CCGG | 1 cut(s) | 161 |
| Hpy166II | GTNNAC | 2 cut(s) | 373, 400 |
| Hpy188I | TCNGA | 2 cut(s) | 7, 150 |
| Hpy188III | TCNNGA | 2 cut(s) | 230, 338 |
| Hpy8I | GTNNAC | 2 cut(s) | 373, 400 |
| HpyCH4III | ACNGT | 1 cut(s) | 370 |
| HpyCH4V | TGCA | 6 cut(s) | 26, 35, 53, 92, 400, 422 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 32, 175 |
| HpyF3I | CTNAG | 2 cut(s) | 6, 269 |
| Hsp92I | GRCGYC | 2 cut(s) | 104, 152 |
| Hsp92II | CATG | 3 cut(s) | 46, 200, 379 |
| HspAI | GCGC | 3 cut(s) | 79, 104, 274 |
| KasI | GGCGCC | 1 cut(s) | 103 |
| Kzo9I | GATC | 2 cut(s) | 277, 355 |
| LguI | GCTCTTC | 1 cut(s) | 423 |
| Lsp1109I | GCAGC | 2 cut(s) | 47, 156 |
| MaeI | CTAG | 1 cut(s) | 230 |
| MaeIII | GTNAC | 2 cut(s) | 19, 163 |
| MalI | GATC | 2 cut(s) | 279, 357 |
| MboI | GATC | 2 cut(s) | 277, 355 |
| MboII | GAAGA | 2 cut(s) | 71, 440 |
| MflI | RGATCY | 1 cut(s) | 355 |
| MhlI | GDGCHC | 2 cut(s) | 180, 402 |
| Mly113I | GGCGCC | 1 cut(s) | 104 |
| MmeI | TCCRAC | 1 cut(s) | 432 |
| MnlI | CCTC | 5 cut(s) | 156, 249, 278, 391, 426 |
| MspI | CCGG | 1 cut(s) | 161 |
| MspR9I | CCNGG | 4 cut(s) | 68, 320, 457, 469 |
| MvaI | CCWGG | 4 cut(s) | 68, 320, 457, 469 |
| MvnI | CGCG | 2 cut(s) | 79, 276 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 32, 175 |
| NarI | GGCGCC | 1 cut(s) | 104 |
| NdeII | GATC | 2 cut(s) | 277, 355 |
| NlaIII | CATG | 3 cut(s) | 46, 200, 379 |
| NlaIV | GGNNCC | 4 cut(s) | 105, 324, 357, 466 |
| PciSI | GCTCTTC | 1 cut(s) | 423 |
| PfoI | TCCNGGA | 1 cut(s) | 66 |
| PinAI | ACCGGT | 1 cut(s) | 160 |
| PkrI | GCNGC | 2 cut(s) | 37, 171 |
| PluTI | GGCGCC | 1 cut(s) | 107 |
| Psp124BI | GAGCTC | 1 cut(s) | 180 |
| Psp6I | CCWGG | 4 cut(s) | 66, 318, 455, 467 |
| PspGI | CCWGG | 4 cut(s) | 66, 318, 455, 467 |
| PspN4I | GGNNCC | 4 cut(s) | 105, 324, 357, 466 |
| PsuI | RGATCY | 1 cut(s) | 355 |
| RsaI | GTAC | 2 cut(s) | 291, 311 |
| RsaNI | GTAC | 2 cut(s) | 290, 310 |
| SacI | GAGCTC | 1 cut(s) | 180 |
| SapI | GCTCTTC | 1 cut(s) | 423 |
| SatI | GCNGC | 2 cut(s) | 36, 170 |
| Sau3AI | GATC | 2 cut(s) | 277, 355 |
| ScaI | AGTACT | 1 cut(s) | 291 |
| ScrFI | CCNGG | 4 cut(s) | 68, 320, 457, 469 |
| SduI | GDGCHC | 2 cut(s) | 180, 402 |
| SetI | ASST | 3 cut(s) | 32, 180, 270 |
| SfoI | GGCGCC | 1 cut(s) | 105 |
| SsiI | CCGC | 3 cut(s) | 98, 193, 462 |
| SspDI | GGCGCC | 1 cut(s) | 103 |
| SspMI | CTAG | 1 cut(s) | 230 |
| SstI | GAGCTC | 1 cut(s) | 180 |
| StyD4I | CCNGG | 4 cut(s) | 66, 318, 455, 467 |
| StyI | CCWWGG | 1 cut(s) | 305 |
| TaaI | ACNGT | 1 cut(s) | 370 |
| TaqI | TCGA | 1 cut(s) | 223 |
| TatI | WGTACW | 1 cut(s) | 289 |
| TseI | GCWGC | 2 cut(s) | 35, 169 |
| TspDTI | ATGAA | 1 cut(s) | 30 |
| VneI | GTGCAC | 1 cut(s) | 398 |
| XbaI | TCTAGA | 1 cut(s) | 229 |
| XspI | CTAG | 1 cut(s) | 230 |
| ZrmI | AGTACT | 1 cut(s) | 291 |