Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF7642 | PF24649 | 90 - 189 | 9.6e-47 | Domain of unknown function (DUF7642) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 946 |
| AccI | GTMKAC | 1 cut(s) | 315 |
| AciI | CCGC | 3 cut(s) | 283, 576, 946 |
| AclWI | GGATC | 3 cut(s) | 57, 633, 690 |
| AcuI | CTGAAG | 1 cut(s) | 780 |
| AcvI | CACGTG | 1 cut(s) | 470 |
| AdeI | CACNNNGTG | 1 cut(s) | 305 |
| AfaI | GTAC | 3 cut(s) | 122, 342, 745 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 177, 350, 388 |
| AgsI | TTSAA | 7 cut(s) | 137, 410, 458, 506, 558, 825, 875 |
| AjnI | CCWGG | 1 cut(s) | 387 |
| AluBI | AGCT | 9 cut(s) | 55, 142, 209, 289, 479, 485, 554, 785, 806 |
| AluI | AGCT | 9 cut(s) | 55, 142, 209, 289, 479, 485, 554, 785, 806 |
| AlwI | GGATC | 3 cut(s) | 57, 633, 690 |
| AoxI | GGCC | 1 cut(s) | 329 |
| ApeKI | GCWGC | 4 cut(s) | 479, 482, 803, 859 |
| AspLEI | GCGC | 1 cut(s) | 766 |
| AsuHPI | GGTGA | 3 cut(s) | 403, 771, 801 |
| AsuII | TTCGAA | 1 cut(s) | 451 |
| BaeGI | GKGCMC | 1 cut(s) | 381 |
| BbrPI | CACGTG | 1 cut(s) | 470 |
| BbvI | GCAGC | 4 cut(s) | 466, 494, 815, 846 |
| BccI | CCATC | 3 cut(s) | 14, 757, 793 |
| BciT130I | CCWGG | 1 cut(s) | 389 |
| BfaI | CTAG | 3 cut(s) | 303, 522, 849 |
| BfmI | CTRYAG | 6 cut(s) | 96, 480, 497, 606, 663, 720 |
| BfoI | RGCGCY | 1 cut(s) | 767 |
| BisI | GCNGC | 5 cut(s) | 480, 483, 804, 860, 947 |
| BlsI | GCNGC | 5 cut(s) | 481, 484, 805, 861, 948 |
| Bme1390I | CCNGG | 1 cut(s) | 389 |
| BmrFI | CCNGG | 1 cut(s) | 389 |
| BmsI | GCATC | 3 cut(s) | 186, 231, 363 |
| BpmI | CTGGAG | 1 cut(s) | 248 |
| Bpu14I | TTCGAA | 1 cut(s) | 451 |
| BsaAI | YACGTR | 1 cut(s) | 470 |
| BsaBI | GATNNNNATC | 1 cut(s) | 398 |
| BsaJI | CCNNGG | 1 cut(s) | 387 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 113, 143, 263, 293 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 177, 350, 388 |
| Bse8I | GATNNNNATC | 1 cut(s) | 398 |
| BseBI | CCWGG | 1 cut(s) | 389 |
| BseDI | CCNNGG | 1 cut(s) | 387 |
| BseGI | GGATG | 2 cut(s) | 91, 749 |
| BseJI | GATNNNNATC | 1 cut(s) | 398 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 177, 350, 388 |
| BseMII | CTCAG | 4 cut(s) | 99, 138, 764, 927 |
| BseRI | GAGGAG | 1 cut(s) | 268 |
| BseSI | GKGCMC | 1 cut(s) | 381 |
| BseXI | GCAGC | 4 cut(s) | 466, 494, 815, 846 |
| BshFI | GGCC | 1 cut(s) | 331 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 177, 350, 388 |
| BsnI | GGCC | 1 cut(s) | 331 |
| Bsp119I | TTCGAA | 1 cut(s) | 451 |
| Bsp1286I | GDGCHC | 1 cut(s) | 381 |
| Bsp143I | GATC | 4 cut(s) | 49, 625, 682, 776 |
| BspACI | CCGC | 3 cut(s) | 283, 576, 946 |
| BspANI | GGCC | 1 cut(s) | 331 |
| BspCNI | CTCAG | 4 cut(s) | 100, 137, 765, 928 |
| BspMAI | CTGCAG | 4 cut(s) | 100, 484, 667, 724 |
| BspPI | GGATC | 3 cut(s) | 57, 633, 690 |
| BspQI | GCTCTTC | 1 cut(s) | 132 |
| BspT104I | TTCGAA | 1 cut(s) | 451 |
| BsrBI | CCGCTC | 1 cut(s) | 946 |
| BssECI | CCNNGG | 1 cut(s) | 387 |
| BssMI | GATC | 4 cut(s) | 49, 625, 682, 776 |
| Bst2UI | CCWGG | 1 cut(s) | 389 |
| Bst4CI | ACNGT | 6 cut(s) | 104, 120, 172, 601, 658, 715 |
| Bst6I | CTCTTC | 1 cut(s) | 132 |
| BstBAI | YACGTR | 1 cut(s) | 470 |
| BstBI | TTCGAA | 1 cut(s) | 451 |
| BstC8I | GCNNGC | 2 cut(s) | 144, 287 |
| BstDEI | CTNAG | 5 cut(s) | 79, 108, 124, 773, 936 |
| BstF5I | GGATG | 2 cut(s) | 91, 749 |
| BstH2I | RGCGCY | 1 cut(s) | 767 |
| BstHHI | GCGC | 1 cut(s) | 766 |
| BstKTI | GATC | 4 cut(s) | 52, 628, 685, 779 |
| BstMBI | GATC | 4 cut(s) | 49, 625, 682, 776 |
| BstNI | CCWGG | 1 cut(s) | 389 |
| BstNSI | RCATGY | 1 cut(s) | 377 |
| BstSCI | CCNGG | 1 cut(s) | 387 |
| BstSFI | CTRYAG | 6 cut(s) | 96, 480, 497, 606, 663, 720 |
| BstSLI | GKGCMC | 1 cut(s) | 381 |
| BstV1I | GCAGC | 4 cut(s) | 466, 494, 815, 846 |
| BstX2I | RGATCY | 2 cut(s) | 625, 682 |
| BstYI | RGATCY | 2 cut(s) | 625, 682 |
| BsuRI | GGCC | 1 cut(s) | 331 |
| BtsCI | GGATG | 2 cut(s) | 91, 749 |
| BtsI | GCAGTG | 3 cut(s) | 93, 660, 717 |
| BtsIMutI | CAGTG | 3 cut(s) | 93, 660, 717 |
| Cac8I | GCNNGC | 2 cut(s) | 144, 287 |
| CfoI | GCGC | 1 cut(s) | 766 |
| Csp6I | GTAC | 3 cut(s) | 121, 341, 744 |
| CviAII | CATG | 5 cut(s) | 229, 374, 622, 679, 736 |
| CviQI | GTAC | 3 cut(s) | 121, 341, 744 |
| DdeI | CTNAG | 5 cut(s) | 79, 108, 124, 773, 936 |
| DpnI | GATC | 4 cut(s) | 51, 627, 684, 778 |
| DpnII | GATC | 4 cut(s) | 49, 625, 682, 776 |
| DraIII | CACNNNGTG | 1 cut(s) | 305 |
| Eam1104I | CTCTTC | 1 cut(s) | 132 |
| EarI | CTCTTC | 1 cut(s) | 132 |
| Eco147I | AGGCCT | 1 cut(s) | 331 |
| Eco57I | CTGAAG | 1 cut(s) | 780 |
| Eco72I | CACGTG | 1 cut(s) | 470 |
| EcoRII | CCWGG | 1 cut(s) | 387 |
| FaeI | CATG | 5 cut(s) | 232, 377, 625, 682, 739 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 319, 351 |
| FatI | CATG | 5 cut(s) | 228, 373, 621, 678, 735 |
| FauI | CCCGC | 1 cut(s) | 290 |
| FblI | GTMKAC | 1 cut(s) | 315 |
| Fnu4HI | GCNGC | 5 cut(s) | 480, 483, 804, 860, 947 |
| FokI | GGATG | 2 cut(s) | 98, 736 |
| Fsp4HI | GCNGC | 5 cut(s) | 480, 483, 804, 860, 947 |
| FspBI | CTAG | 3 cut(s) | 303, 522, 849 |
| GlaI | GCGC | 1 cut(s) | 765 |
| GluI | GCNGC | 5 cut(s) | 480, 483, 804, 860, 947 |
| GsuI | CTGGAG | 1 cut(s) | 248 |
| HaeII | RGCGCY | 1 cut(s) | 767 |
| HaeIII | GGCC | 1 cut(s) | 331 |
| HhaI | GCGC | 1 cut(s) | 766 |
| Hin1II | CATG | 5 cut(s) | 232, 377, 625, 682, 739 |
| Hin6I | GCGC | 1 cut(s) | 764 |
| HinP1I | GCGC | 1 cut(s) | 764 |
| HindIII | AAGCTT | 1 cut(s) | 552 |
| HinfI | GANTC | 2 cut(s) | 32, 71 |
| HphI | GGTGA | 3 cut(s) | 403, 771, 801 |
| Hpy166II | GTNNAC | 2 cut(s) | 316, 746 |
| Hpy188I | TCNGA | 4 cut(s) | 31, 76, 109, 774 |
| Hpy188III | TCNNGA | 1 cut(s) | 265 |
| Hpy8I | GTNNAC | 2 cut(s) | 316, 746 |
| HpyAV | CCTTC | 6 cut(s) | 262, 342, 529, 605, 662, 719 |
| HpyCH4III | ACNGT | 6 cut(s) | 104, 120, 172, 601, 658, 715 |
| HpyCH4IV | ACGT | 1 cut(s) | 469 |
| HpyCH4V | TGCA | 5 cut(s) | 98, 424, 482, 665, 722 |
| HpyF3I | CTNAG | 5 cut(s) | 79, 108, 124, 773, 936 |
| HpySE526I | ACGT | 1 cut(s) | 469 |
| Hsp92II | CATG | 5 cut(s) | 232, 377, 625, 682, 739 |
| HspAI | GCGC | 1 cut(s) | 764 |
| Kzo9I | GATC | 4 cut(s) | 49, 625, 682, 776 |
| LguI | GCTCTTC | 1 cut(s) | 132 |
| LpnPI | CCDG | 7 cut(s) | 185, 278, 374, 401, 485, 795, 948 |
| Lsp1109I | GCAGC | 4 cut(s) | 466, 494, 815, 846 |
| LweI | GCATC | 3 cut(s) | 186, 231, 363 |
| MaeI | CTAG | 3 cut(s) | 303, 522, 849 |
| MaeII | ACGT | 1 cut(s) | 469 |
| MaeIII | GTNAC | 6 cut(s) | 295, 601, 658, 715, 754, 921 |
| MalI | GATC | 4 cut(s) | 51, 627, 684, 778 |
| MbiI | CCGCTC | 1 cut(s) | 946 |
| MboI | GATC | 4 cut(s) | 49, 625, 682, 776 |
| MboII | GAAGA | 3 cut(s) | 149, 808, 887 |
| MfeI | CAATTG | 1 cut(s) | 363 |
| MflI | RGATCY | 2 cut(s) | 625, 682 |
| MhlI | GDGCHC | 1 cut(s) | 381 |
| MluCI | AATT | 5 cut(s) | 363, 453, 768, 854, 952 |
| MmeI | TCCRAC | 3 cut(s) | 566, 623, 680 |
| MnlI | CCTC | 5 cut(s) | 39, 139, 289, 363, 525 |
| MseI | TTAA | 4 cut(s) | 159, 249, 864, 911 |
| MslI | CAYNNNNRTG | 2 cut(s) | 18, 227 |
| MspA1I | CMGCKG | 1 cut(s) | 485 |
| MspR9I | CCNGG | 1 cut(s) | 389 |
| MunI | CAATTG | 1 cut(s) | 363 |
| MvaI | CCWGG | 1 cut(s) | 389 |
| NdeII | GATC | 4 cut(s) | 49, 625, 682, 776 |
| NlaIII | CATG | 5 cut(s) | 232, 377, 625, 682, 739 |
| NmuCI | GTSAC | 5 cut(s) | 601, 658, 715, 754, 921 |
| NspI | RCATGY | 1 cut(s) | 377 |
| NspV | TTCGAA | 1 cut(s) | 451 |
| PceI | AGGCCT | 1 cut(s) | 331 |
| PciSI | GCTCTTC | 1 cut(s) | 132 |
| PfeI | GAWTC | 2 cut(s) | 32, 71 |
| PkrI | GCNGC | 5 cut(s) | 481, 484, 805, 861, 948 |
| PmaCI | CACGTG | 1 cut(s) | 470 |
| PmlI | CACGTG | 1 cut(s) | 470 |
| Ppu21I | YACGTR | 1 cut(s) | 470 |
| Psp6I | CCWGG | 1 cut(s) | 387 |
| PspCI | CACGTG | 1 cut(s) | 470 |
| PspGI | CCWGG | 1 cut(s) | 387 |
| PstI | CTGCAG | 4 cut(s) | 100, 484, 667, 724 |
| PsuI | RGATCY | 2 cut(s) | 625, 682 |
| PvuII | CAGCTG | 1 cut(s) | 485 |
| RsaI | GTAC | 3 cut(s) | 122, 342, 745 |
| RsaNI | GTAC | 3 cut(s) | 121, 341, 744 |
| RseI | CAYNNNNRTG | 2 cut(s) | 18, 227 |
| SapI | GCTCTTC | 1 cut(s) | 132 |
| SaqAI | TTAA | 4 cut(s) | 159, 249, 864, 911 |
| SatI | GCNGC | 5 cut(s) | 480, 483, 804, 860, 947 |
| Sau3AI | GATC | 4 cut(s) | 49, 625, 682, 776 |
| ScrFI | CCNGG | 1 cut(s) | 389 |
| SduI | GDGCHC | 1 cut(s) | 381 |
| SfaNI | GCATC | 3 cut(s) | 186, 231, 363 |
| SfcI | CTRYAG | 6 cut(s) | 96, 480, 497, 606, 663, 720 |
| SfuI | TTCGAA | 1 cut(s) | 451 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 18, 227 |
| Sse9I | AATT | 5 cut(s) | 363, 453, 768, 854, 952 |
| SseBI | AGGCCT | 1 cut(s) | 331 |
| SsiI | CCGC | 3 cut(s) | 283, 576, 946 |
| SspMI | CTAG | 3 cut(s) | 303, 522, 849 |
| StuI | AGGCCT | 1 cut(s) | 331 |
| StyD4I | CCNGG | 1 cut(s) | 387 |
| TaaI | ACNGT | 6 cut(s) | 104, 120, 172, 601, 658, 715 |
| TaiI | ACGT | 1 cut(s) | 472 |
| TaqI | TCGA | 3 cut(s) | 44, 451, 903 |
| TaqII | GACCGA | 1 cut(s) | 27 |
| TasI | AATT | 5 cut(s) | 363, 453, 768, 854, 952 |
| TatI | WGTACW | 1 cut(s) | 120 |
| TauI | GCSGC | 1 cut(s) | 949 |
| TfiI | GAWTC | 2 cut(s) | 32, 71 |
| Tru1I | TTAA | 4 cut(s) | 159, 249, 864, 911 |
| Tru9I | TTAA | 4 cut(s) | 159, 249, 864, 911 |
| TscAI | CASTG | 3 cut(s) | 100, 667, 724 |
| TseFI | GTSAC | 5 cut(s) | 601, 658, 715, 754, 921 |
| TseI | GCWGC | 4 cut(s) | 479, 482, 803, 859 |
| Tsp45I | GTSAC | 5 cut(s) | 601, 658, 715, 754, 921 |
| TspDTI | ATGAA | 2 cut(s) | 431, 507 |
| TspGWI | ACGGA | 1 cut(s) | 742 |
| TspRI | CASTG | 3 cut(s) | 100, 667, 724 |
| XceI | RCATGY | 1 cut(s) | 377 |
| XmiI | GTMKAC | 1 cut(s) | 315 |
| XspI | CTAG | 3 cut(s) | 303, 522, 849 |