Rorug05G0416600

Domain of unknown function (DUF4283)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
57735948 .. 57739881
3934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0416600.1

Sequence Viewer

Length: 2127 bp
ATGAAGGACATGGAGAAAAGCTTGGATCCTCAGCTATGGCACGCCTGCGCCGGCGGCATGGTTCAAATGCCTCCGGTGAACTCCAAAGTCTTCTACTTTCCTCAAGGCCACGCCGAGCACGCCCAAACCCACGTCGATTTCCCCGCCTCCTCCGTCAGAATCCCACCTCTCATTCTCTGCCGCGTCGCCGGAATCAGATACATGGCCGACCCCGAAACCGACGAGGTCTTCGCCAGAATCCGGCTGGTCCCTTCCGAGAGCAACGAGCTTTTTGCTCAGGACCAAGGCTGTGTGGACTCTGATGATGGGTCTGGGAATCCGGAAAAGCCTTCTTCTTTCGCTAAGACTCTCACCCAGTCCGACGCCAACAATGGCGGCGGGTTCTCCGTCCCGAGATACTGCGCCGAGACTATTTTCCCGAGGCTGGACTACTCCGCCGACCCGCCCGTGCAGACGGTGATCGCCAAGGACGTCCACGGCGAGGTGTGGAAGTTCCGGCACATTTACCGAGGCACCCCTCGCCGGCATTTGCTGACCACCGGGTGGAGCACGTTCGTGAACCAGAAGAAGCTCGTCGCCGGCGACTCGATTGTGTTCCTGCGAGCCGAAAACGGCGACCTCTGCGTCGGGATTCGGAGGGCCAAGCGGGGGTCGCCGGAAGGGTCGTCGGAATCGGGGTGGAACCACGGCGGTTCTGGGGGAGGGTCGGTTTTGCCGTATTCCGGGTTCTCGGTGTTTCTGAAAGATGAAGAGAGCAAAATGGGGAGAAATAATGGGTTTGGGAATTCGAGTCTGAATAATGGGAAGGTGAGAGGGGGCAGAGTGAGGCCTGAGGCTGTGGTGGAGGCTGCCACTCTTGCGGCCAACGGACAGCCGTTTGAGGTGGTTTATTATCCGAGAGCCAGCACGCCGGAGTTTTGTGTTAAGGCCTCGGCGGTGAGGGCGGCGATGAGGGTGCAGTGGTGCTCAGGCATGAGGTTTAAGATGGCTTTTGAGACTGAGGACTCTTCCAGGATTAGTTGGTTCATGGGAACCATAGCTTCTGTTGATGTTAATGATAAAATCCGCTGGCCTAATTCTCCTTGGAGAGTTCTACAGGTGACATGGGATGAGCCAGATTTGTTACAGAATGTGAAGTGTGTCAGCCCATGGTTGACTGAGCTGGTATCAAATTTTCCCATTATCCACATGGCGCCCTTTTCACCGCCACGGAAGAAGTTGCGTATCCCGCAACACCCAGACTTTGATGGGCAATTAACGTTGCCGTCATTTTCAGGCAACCCCCTCGGGTCCAGCAGCCCCATGTGTTGTCTACCAGATAACACTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAACTTAGAATATCTTTATCAAATCTCCACTTTAACAGCAAACTGCAGTCGGGGCTGTTCTCGTCCAGTTTCCAGAGGTTCGATCAAAATTCTAGAATTCCCAATGGCATCAGGAATGGCCACACAAACAGCAACGAAAGCCTATCTTGCTTGCTAACAATGGGAAGTTCTAATCAGAACTTGGAGAAATCTGATGATGTGAAGAAACACCAGTTTTTACTCTTTGGTCAACCAATAATTACTGAGCAGCAGATCTCTCGTAGCTGCTCCAGTGATGCAGTTTCACAAGTTCTTGCTGGTAATAATTTGAAAGATGAGAGTCAAGGCAGAAAAAGGTTTCTATCCATTGGTTCAGACTCTGCTCTTGAGCGCTGGGTTTCACTAGAGAAATCTGCATTGAACAAGGAATTTCAAGCTATTGATGTGGATACCGGTCATTGCAAGGTATTCATGGAGTCCGAGGATGTTGGAAGGACTCTTGACCTCTCAGCTCTAGACTCTTATGATGAGTTATACAGGAGGCTGACCATCATGTTTGGATTAGAAAAACTGGAGATGCTGAGCCATGTTCTTTACCGAGATCCAACAGGTGTCGTTAAACAAACTGGAGATGAACCATTCGGTGAATTTAAGAAAACAGCAAAGAGACTGACTATTCTAACACGTCCGGCCAATGAAACTATTGGAAGGACATGGATTAGAGGAATGGAAAATGCTGAAAGTAGACTTGGTGCATCAAACAAGACTGGTCCTTTGAGCATATTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

708

Amino Acids

78.3

Weight (kDa)

8.14

Isoelectric Point (pI)

43.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 113 - 214 1.7e-23 B3 DNA binding domain
BRWD_AD PF25313 287 - 385 1.2e-08 BRWD/PHIP ancillary domain-like domain
ARF_AD PF06507 306 - 389 1.1e-32 Auxin response factor ancillary domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000032)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20531 FvH4_1g22101 FvH4_1g26161 FvH4_2g06802 FvH4_2g07851 FvH4_2g07920 FvH4_2g11481 FvH4_2g14491 FvH4_2g14510 FvH4_3g02671 FvH4_3g10870 FvH4_3g16811 FvH4_3g18871 FvH4_3g20011 FvH4_3g29181 FvH4_3g30101 FvH4_3g33941 FvH4_4g08031 FvH4_4g10192 FvH4_4g20791 FvH4_5g02440 FvH4_5g03261 FvH4_5g15791 FvH4_5g22472 FvH4_5g23680 FvH4_5g26530 FvH4_5g26540 FvH4_5g30241 FvH4_5g32311 FvH4_5g38943 FvH4_6g05152 FvH4_6g10481 FvH4_6g14353 FvH4_6g17850 FvH4_6g19460 FvH4_6g23861 FvH4_6g30881 FvH4_6g31722 FvH4_6g40031 FvH4_6g46031 FvH4_6g49021 FvH4_7g12530 FvH4_7g15960
pyrus_communis pycom09g18450
rosa_chinensis RchiOBHm_Chr1g0341771 RchiOBHm_Chr1g0354791 RchiOBHm_Chr2g0095751 RchiOBHm_Chr5g0030691 RchiOBHm_Chr7g0181741 RchiOBHm_Chr7g0222721 RchiOBHm_Chr7g0243191
rosa_laevigata RLG00000001405 RLG00000001878 RLG00000002053 RLG00000002361 RLG00000003846 RLG00000012639 RLG00000013326 RLG00000014331 RLG00000017340 RLG00000017548 RLG00000018177 RLG00000018372 RLG00000019006 RLG00000019406 RLG00000019522 RLG00000019922 RLG00000020489 RLG00000022399 RLG00000023433 RLG00000027372 RLG00000028576 RLG00000028590 RLG00000028947 RLG00000032552 RLG00000033183 RLG00000033245 RLG00000033730 RLG00000034443 RLG00000034772 RLG00000036008
rosa_multiflora Rmu_co8029972.1_g000001 Rmu_co8044978.1_g000001 Rmu_co8338363.1_g000001 Rmu_co8426431.1_g000002 Rmu_co8457575.1_g000001 Rmu_sc0000010.1_g000025 Rmu_sc0000197.1_g000018 Rmu_sc0000220.1_g000009 Rmu_sc0000221.1_g000012 Rmu_sc0000258.1_g000002 Rmu_sc0000284.1_g000015 Rmu_sc0000303.1_g000021 Rmu_sc0000309.1_g000015 Rmu_sc0000317.1_g000017 Rmu_sc0000355.1_g000003 Rmu_sc0000376.1_g000035 Rmu_sc0000420.1_g000009 Rmu_sc0000493.1_g000019 Rmu_sc0000498.1_g000044 Rmu_sc0000540.1_g000015 Rmu_sc0000554.1_g000031 Rmu_sc0000577.1_g000004 Rmu_sc0000647.1_g000007 Rmu_sc0000703.1_g000002 Rmu_sc0000776.1_g000025 Rmu_sc0000924.1_g000044 Rmu_sc0000940.1_g000034 Rmu_sc0000940.1_g000036 Rmu_sc0000990.1_g000014 Rmu_sc0001004.1_g000018 Rmu_sc0001027.1_g000014 Rmu_sc0001059.1_g000004 Rmu_sc0001089.1_g000021 Rmu_sc0001118.1_g000013 Rmu_sc0001141.1_g000024 Rmu_sc0001154.1_g000002 Rmu_sc0001179.1_g000023 Rmu_sc0001230.1_g000014 Rmu_sc0001298.1_g000042 Rmu_sc0001306.1_g000030 Rmu_sc0001306.1_g000036 Rmu_sc0001341.1_g000007 Rmu_sc0001386.1_g000013 Rmu_sc0001461.1_g000019 Rmu_sc0001461.1_g000047 Rmu_sc0001476.1_g000013 Rmu_sc0001516.1_g000032 Rmu_sc0001780.1_g000007 Rmu_sc0001793.1_g000005 Rmu_sc0001911.1_g000013 Rmu_sc0001962.1_g000011 Rmu_sc0001986.1_g000004 Rmu_sc0002061.1_g000021 Rmu_sc0002119.1_g000024 Rmu_sc0002194.1_g000021 Rmu_sc0002284.1_g000019 Rmu_sc0002316.1_g000014 Rmu_sc0002322.1_g000006 Rmu_sc0002351.1_g000107 Rmu_sc0002387.1_g000008 Rmu_sc0002389.1_g000029 Rmu_sc0002507.1_g000001 Rmu_sc0002589.1_g000038 Rmu_sc0002638.1_g000041 Rmu_sc0002656.1_g000007 Rmu_sc0002882.1_g000030 Rmu_sc0002927.1_g000034 Rmu_sc0003024.1_g000020 Rmu_sc0003032.1_g000027 Rmu_sc0003069.1_g000025 Rmu_sc0003268.1_g000002 Rmu_sc0003296.1_g000007 Rmu_sc0003363.1_g000073 Rmu_sc0003527.1_g000017 Rmu_sc0003638.1_g000007 Rmu_sc0003669.1_g000007 Rmu_sc0003882.1_g000021 Rmu_sc0003941.1_g000004 Rmu_sc0003979.1_g000007 Rmu_sc0003983.1_g000007 Rmu_sc0003989.1_g000017 Rmu_sc0004016.1_g000003 Rmu_sc0004020.1_g000025 Rmu_sc0004094.1_g000016 Rmu_sc0004135.1_g000002 Rmu_sc0004154.1_g000014 Rmu_sc0004316.1_g000002 Rmu_sc0004316.1_g000015 Rmu_sc0004321.1_g000013 Rmu_sc0004467.1_g000005 Rmu_sc0004517.1_g000007 Rmu_sc0004642.1_g000012 Rmu_sc0004729.1_g000024 Rmu_sc0004757.1_g000018 Rmu_sc0004788.1_g000003 Rmu_sc0004835.1_g000026 Rmu_sc0004889.1_g000019 Rmu_sc0004991.1_g000009 Rmu_sc0005045.1_g000004 Rmu_sc0005079.1_g000004 Rmu_sc0005083.1_g000008 Rmu_sc0005170.1_g000002 Rmu_sc0005190.1_g000009 Rmu_sc0005217.1_g000010 Rmu_sc0005234.1_g000011 Rmu_sc0005608.1_g000016 Rmu_sc0005802.1_g000029 Rmu_sc0005810.1_g000006 Rmu_sc0005904.1_g000006 Rmu_sc0005967.1_g000012 Rmu_sc0006028.1_g000027 Rmu_sc0006059.1_g000040 Rmu_sc0006423.1_g000002 Rmu_sc0006467.1_g000001 Rmu_sc0006470.1_g000004 Rmu_sc0006598.1_g000003 Rmu_sc0006599.1_g000004 Rmu_sc0006632.1_g000021 Rmu_sc0006707.1_g000008 Rmu_sc0006791.1_g000008 Rmu_sc0006835.1_g000016 Rmu_sc0007100.1_g000002 Rmu_sc0007115.1_g000009 Rmu_sc0007362.1_g000012 Rmu_sc0007461.1_g000004 Rmu_sc0007474.1_g000001 Rmu_sc0007681.1_g000011 Rmu_sc0007697.1_g000003 Rmu_sc0007704.1_g000001 Rmu_sc0007722.1_g000016 Rmu_sc0007843.1_g000001 Rmu_sc0007856.1_g000009 Rmu_sc0008328.1_g000007 Rmu_sc0008780.1_g000005 Rmu_sc0009185.1_g000011 Rmu_sc0009599.1_g000021 Rmu_sc0009881.1_g000002 Rmu_sc0009891.1_g000002 Rmu_sc0010357.1_g000003 Rmu_sc0010781.1_g000005 Rmu_sc0011133.1_g000005 Rmu_sc0012334.1_g000001 Rmu_sc0012569.1_g000015 Rmu_sc0012984.1_g000001 Rmu_sc0013508.1_g000001 Rmu_sc0013550.1_g000005 Rmu_sc0013730.1_g000001 Rmu_sc0013945.1_g000001 Rmu_sc0013945.1_g000003 Rmu_sc0014005.1_g000005 Rmu_sc0014111.1_g000009 Rmu_sc0014111.1_g000010 Rmu_sc0014203.1_g000025 Rmu_sc0014839.1_g000002 Rmu_sc0015410.1_g000001 Rmu_sc0015513.1_g000003 Rmu_sc0015791.1_g000008 Rmu_sc0016657.1_g000004 Rmu_sc0017187.1_g000002 Rmu_sc0017400.1_g000001 Rmu_sc0017895.1_g000006 Rmu_sc0018221.1_g000008 Rmu_sc0018825.1_g000002 Rmu_sc0019047.1_g000001 Rmu_sc0019077.1_g000001 Rmu_sc0019171.1_g000001 Rmu_sc0019299.1_g000002 Rmu_sc0020342.1_g000008 Rmu_sc0020688.1_g000002 Rmu_sc0020688.1_g000003 Rmu_sc0021871.1_g000012 Rmu_sc0022925.1_g000001 Rmu_sc0023965.1_g000005 Rmu_sc0024968.1_g000001 Rmu_sc0024969.1_g000001 Rmu_sc0025035.1_g000002 Rmu_sc0025167.1_g000005 Rmu_sc0025567.1_g000001 Rmu_sc0026096.1_g000001 Rmu_sc0026586.1_g000001 Rmu_sc0028358.1_g000002 Rmu_sc0032171.1_g000001 Rmu_sc0034632.1_g000001 Rmu_sc0034633.1_g000001 Rmu_sc0035481.1_g000001 Rmu_sc0036303.1_g000001 Rmu_sc0039774.1_g000001 Rmu_sc0040023.1_g000002 Rmu_sc0040790.1_g000001 Rmu_sc0041574.1_g000001 Rmu_sc0042768.1_g000003 Rmu_ssc0000038.1_g000016 Rmu_ssc0000062.1_g000035 Rmu_ssc0000083.1_g000009 Rmu_ssc0000093.1_g000006 Rmu_ssc0000112.1_g000023 Rmu_ssc0000155.1_g000007 Rmu_ssc0000171.1_g000017 Rmu_ssc0000196.1_g000017 Rmu_ssc0000257.1_g000027 Rmu_ssc0000323.1_g000023 Rmu_ssc0000440.1_g000011 Rmu_ssc0000454.1_g000021 Rmu_ssc0000473.1_g000011
rosa_roxburghii Rroxscaffold_1G00014010 Rroxscaffold_1G00039470 Rroxscaffold_1G00045350 Rroxscaffold_2G00082440 Rroxscaffold_2G00096630 Rroxscaffold_2G00100560 Rroxscaffold_2G00102600 Rroxscaffold_2G00117720 Rroxscaffold_2G00120390 Rroxscaffold_2G00126010 Rroxscaffold_3G00220680 Rroxscaffold_3G00241760 Rroxscaffold_4G00309670 Rroxscaffold_4G00312380 Rroxscaffold_5G00339950 Rroxscaffold_5G00361980 Rroxscaffold_5G00370500 Rroxscaffold_5G00376480 Rroxscaffold_5G00384070 Rroxscaffold_6G00393690 Rroxscaffold_6G00396520 Rroxscaffold_6G00396850 Rroxscaffold_6G00404790 Rroxscaffold_7G00177690 Rroxscaffold_7G00178170 Rroxscaffold_7G00194330 Rroxscaffold_7G00197090 Rroxscaffold_9G00437910
rosa_rugosa Rorug01G0010100 Rorug01G0035300 Rorug01G0038600 Rorug01G0038700 Rorug01G0050300 Rorug01G0143800.1 Rorug01G0211700 Rorug01G0266600 Rorug01G0268800 Rorug01G0301200 Rorug02G0139800 Rorug02G0247100 Rorug02G0247100 Rorug02G0276800 Rorug02G0283300 Rorug02G0289800 Rorug02G0326700 Rorug02G0368100 Rorug02G0427000 Rorug02G0439100 Rorug02G0611200 Rorug02G0626600 Rorug03G0049100 Rorug03G0108000 Rorug03G0118600 Rorug03G0174300.1 Rorug03G0182300 Rorug03G0189800 Rorug03G0207000 Rorug03G0220700 Rorug03G0229400 Rorug03G0253700 Rorug03G0276500 Rorug03G0283300.1 Rorug03G0283500 Rorug03G0283600 Rorug03G0299600 Rorug04G0052200 Rorug04G0052300 Rorug04G0115800 Rorug04G0159700 Rorug04G0170900 Rorug04G0178100 Rorug04G0250800 Rorug04G0317200 Rorug04G0409500 Rorug05G0022500 Rorug05G0134900 Rorug05G0144800 Rorug05G0158200 Rorug05G0168300 Rorug05G0168400 Rorug05G0168600 Rorug05G0229800 Rorug05G0259100 Rorug05G0285700 Rorug05G0294600 Rorug05G0306400 Rorug05G0335300 Rorug05G0390100 Rorug05G0392900 Rorug05G0407100 Rorug05G0416600 Rorug05G0536900 Rorug05G0550300 Rorug06G0040900 Rorug06G0042800 Rorug06G0093000 Rorug06G0110700 Rorug06G0115600 Rorug06G0205700 Rorug07G0016900.1 Rorug07G0017000 Rorug07G0095200 Rorug07G0106400 Rorug07G0116400 Rorug07G0127300 Rorug07G0151100 Rorug07G0151200 Rorug07G0178200 Rorug07G0224300 Rorug07G0224400 Rorug07G0226400 Rorug07G0258200 Rorug07G0328000 RorugPtG0002700.1
rosa_samantha Rh1BG231600 Rh1BG235500 Rh1DG259300 Rh2AG044200 Rh2AG095600 Rh2AG164800 Rh2AG361400 Rh2AG370600 Rh2AG487800 Rh2AG620400 Rh2BG171900 Rh2BG244600 Rh2BG500300 Rh2CG189500 Rh2CG317600 Rh2CG374400 Rh2CG474300 Rh2DG170300 Rh2DG374800 Rh2DG511500 Rh3AG273400 Rh3AG331300 Rh3CG203900 Rh3CG222200 Rh3CG253800 Rh3CG269900 Rh3DG073800 Rh3DG208100 Rh3DG224000 Rh3DG265900 Rh4AG217200 Rh4BG076000 Rh4BG113200 Rh4BG240700 Rh4BG414300 Rh4CG266600 Rh4CG307600 Rh5BG088500 Rh5BG469000 Rh5CG284400 Rh5CG491200 Rh5CG557400 Rh5DG399000 Rh6AG457400 Rh6BG339800 Rh6BG443700 Rh6CG115400 Rh6CG471500 Rh6DG390100 Rh6DG457900 Rh7AG372100 Rh7AG429800 Rh7AG484600 Rh7BG176400 Rh7BG233900 Rh7BG244400 Rh7BG279800 Rh7BG285100 Rh7CG172200 Rh7CG390500 Rh7CG502600 Rh7CG518200 Rh7DG252500 Rh7DG294200 Rh7DG376400 Rh7DG390100
rosa_wichuraiana Rw0G001650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 623
AatII GACGTC 1 cut(s) 474
AccB1I GGYRCC 2 cut(s) 512, 1192
AccB7I CCANNNNNTGG 1 cut(s) 543
AccI GTMKAC 2 cut(s) 1312, 2080
AccII CGCG 1 cut(s) 183
AccIII TCCGGA 1 cut(s) 319
AclI AACGTT 1 cut(s) 1259
AclWI GGATC 3 cut(s) 20, 33, 1931
AcoI YGGCCR 4 cut(s) 204, 861, 1474, 2025
AcsI RAATTY 6 cut(s) 784, 1171, 1444, 1452, 1763, 1982
AcyI GRCGYC 3 cut(s) 363, 471, 1193
AdeI CACNNNGTG 1 cut(s) 543
AfeI AGCGCT 1 cut(s) 1727
AfiI CCNNNNNNNGG 7 cut(s) 240, 424, 481, 522, 543, 648, 722
AflIII ACRYGT 1 cut(s) 2018
AgeI ACCGGT 1 cut(s) 1787
AgsI TTSAA 4 cut(s) 65, 1666, 1756, 1769
AjiI CACGTC 2 cut(s) 133, 2021
AjnI CCWGG 2 cut(s) 1010, 1346
AjuI GAANNNNNNNTTGG 2 cut(s) 2067, 2099
AleI CACNNNNGTG 1 cut(s) 554
AluBI AGCT 9 cut(s) 21, 34, 268, 571, 1040, 1162, 1620, 1772, 1847
AluI AGCT 9 cut(s) 21, 34, 268, 571, 1040, 1162, 1620, 1772, 1847
Alw21I GWGCWC 3 cut(s) 120, 551, 968
Alw26I GTCTC 3 cut(s) 401, 989, 1996
AlwI GGATC 3 cut(s) 20, 33, 1931
AlwNI CAGNNNCTG 1 cut(s) 1715
Ama87I CYCGRG 3 cut(s) 391, 418, 1286
Aor13HI TCCGGA 1 cut(s) 319
Aor51HI AGCGCT 1 cut(s) 1727
AoxI GGCC 9 cut(s) 106, 204, 639, 827, 861, 927, 1070, 1474, 2025
ApeKI GCWGC 4 cut(s) 848, 1296, 1603, 1620
ApoI RAATTY 6 cut(s) 784, 1171, 1444, 1452, 1763, 1982
ArsI GACNNNNNNTTYG 4 cut(s) 212, 244, 2092, 2124
AsiGI ACCGGT 1 cut(s) 1787
AspLEI GCGC 4 cut(s) 50, 404, 1195, 1728
AspS9I GGNCC 5 cut(s) 247, 280, 639, 1290, 2105
AsuC2I CCSGG 2 cut(s) 541, 724
AsuHPI GGTGA 8 cut(s) 88, 343, 469, 820, 949, 1111, 1194, 1991
AvaI CYCGRG 3 cut(s) 391, 418, 1286
AvaII GGWCC 4 cut(s) 247, 280, 1290, 2105
AxyI CCTNAGG 1 cut(s) 831
BalI TGGCCA 1 cut(s) 1476
BamHI GGATCC 1 cut(s) 25
BanI GGYRCC 2 cut(s) 512, 1192
BbsI GAAGAC 2 cut(s) 82, 220
Bbv12I GWGCWC 3 cut(s) 120, 551, 968
BbvCI CCTCAGC 1 cut(s) 30
BbvI GCAGC 4 cut(s) 835, 1308, 1607, 1615
BccI CCATC 4 cut(s) 299, 979, 1241, 1892
BceAI ACGGC 6 cut(s) 493, 628, 700, 703, 859, 1249
BcgI CGANNNNNNTGC 8 cut(s) 254, 288, 937, 971, 1267, 1301, 1595, 1629
BciT130I CCWGG 2 cut(s) 1012, 1348
BciVI GTATCC 2 cut(s) 1235, 1777
BcnI CCSGG 2 cut(s) 541, 724
BcoDI GTCTC 3 cut(s) 401, 989, 1996
BfaI CTAG 3 cut(s) 1449, 1739, 1850
BfmI CTRYAG 3 cut(s) 1094, 1329, 1400
BfoI RGCGCY 2 cut(s) 1196, 1729
BfuI GTATCC 2 cut(s) 1235, 1777
BglII AGATCT 1 cut(s) 1608
BisI GCNGC 9 cut(s) 55, 181, 376, 849, 861, 945, 1297, 1604, 1621
BlpI GCTNAGC 1 cut(s) 1916
BlsI GCNGC 9 cut(s) 56, 182, 377, 850, 862, 946, 1298, 1605, 1622
Bme1390I CCNGG 4 cut(s) 541, 724, 1012, 1348
Bme18I GGWCC 4 cut(s) 247, 280, 1290, 2105
BmeT110I CYCGRG 3 cut(s) 391, 418, 1286
BmgBI CACGTC 2 cut(s) 133, 2021
BmgT120I GGNCC 5 cut(s) 247, 280, 639, 1290, 2105
BmiI GGNNCC 8 cut(s) 27, 249, 514, 683, 1033, 1194, 1291, 1345
BmrFI CCNGG 4 cut(s) 541, 724, 1012, 1348
BmrI ACTGGG 1 cut(s) 349
BmsI GCATC 4 cut(s) 1473, 1621, 1902, 2099
BmuI ACTGGG 1 cut(s) 349
BpiI GAAGAC 2 cut(s) 82, 220
BpmI CTGGAG 3 cut(s) 1609, 1928, 1983
Bpu10I CCTNAGC 3 cut(s) 30, 276, 967
Bpu1102I GCTNAGC 1 cut(s) 1916
BpuEI CTTGAG 2 cut(s) 87, 1742
BpuMI CCSGG 2 cut(s) 541, 724
BsaHI GRCGYC 3 cut(s) 363, 471, 1193
BsaWI WCCGGW 3 cut(s) 73, 319, 1787
BsaXI ACNNNNNCTCC 2 cut(s) 693, 723
Bsc4I CCNNNNNNNGG 7 cut(s) 240, 424, 481, 522, 543, 648, 722
Bse118I RCCGGY 4 cut(s) 50, 522, 578, 1787
Bse1I ACTGG 7 cut(s) 355, 1422, 1567, 1626, 1911, 1966, 2107
Bse21I CCTNAGG 1 cut(s) 831
Bse3DI GCAATG 1 cut(s) 1792
BseAI TCCGGA 1 cut(s) 319
BseBI CCWGG 2 cut(s) 1012, 1348
BseGI GGATG 2 cut(s) 1114, 1825
BseLI CCNNNNNNNGG 7 cut(s) 240, 424, 481, 522, 543, 648, 722
BseMI GCAATG 1 cut(s) 1792
BseMII CTCAG 9 cut(s) 44, 290, 822, 981, 990, 1149, 1590, 1857, 1907
BseNI ACTGG 7 cut(s) 355, 1422, 1567, 1626, 1911, 1966, 2107
BseRI GAGGAG 1 cut(s) 139
BseXI GCAGC 4 cut(s) 835, 1308, 1607, 1615
BseYI CCCAGC 1 cut(s) 1728
BsgI GTGCAG 2 cut(s) 470, 977
Bsh1236I CGCG 1 cut(s) 183
BshFI GGCC 9 cut(s) 108, 206, 641, 829, 863, 929, 1072, 1476, 2027
BshNI GGYRCC 2 cut(s) 512, 1192
BshTI ACCGGT 1 cut(s) 1787
BsiHKAI GWGCWC 3 cut(s) 120, 551, 968
BsiHKCI CYCGRG 3 cut(s) 391, 418, 1286
BslFI GGGAC 2 cut(s) 233, 374
BslI CCNNNNNNNGG 7 cut(s) 240, 424, 481, 522, 543, 648, 722
BsmAI GTCTC 3 cut(s) 401, 989, 1996
BsmFI GGGAC 2 cut(s) 233, 374
BsnI GGCC 9 cut(s) 108, 206, 641, 829, 863, 929, 1072, 1476, 2027
BsoBI CYCGRG 3 cut(s) 391, 418, 1286
Bsp1286I GDGCHC 3 cut(s) 120, 551, 968
Bsp13I TCCGGA 1 cut(s) 319
Bsp143I GATC 5 cut(s) 25, 459, 1438, 1608, 1936
Bsp1720I GCTNAGC 1 cut(s) 1916
Bsp19I CCATGG 1 cut(s) 1148
BspANI GGCC 9 cut(s) 108, 206, 641, 829, 863, 929, 1072, 1476, 2027
BspCNI CTCAG 9 cut(s) 43, 289, 823, 980, 991, 1150, 1591, 1856, 1908
BspEI TCCGGA 1 cut(s) 319
BspFNI CGCG 1 cut(s) 183
BspLI GGNNCC 8 cut(s) 27, 249, 514, 683, 1033, 1194, 1291, 1345
BspMAI CTGCAG 2 cut(s) 1333, 1404
BspPI GGATC 3 cut(s) 20, 33, 1931
BspT107I GGYRCC 2 cut(s) 512, 1192
BsrDI GCAATG 1 cut(s) 1792
BsrFI RCCGGY 4 cut(s) 50, 522, 578, 1787
BsrI ACTGG 7 cut(s) 355, 1422, 1567, 1626, 1911, 1966, 2107
BssAI RCCGGY 4 cut(s) 50, 522, 578, 1787
BssMI GATC 5 cut(s) 25, 459, 1438, 1608, 1936
BssNI GRCGYC 3 cut(s) 363, 471, 1193
BssT1I CCWWGG 4 cut(s) 283, 465, 1082, 1148
Bst2UI CCWGG 2 cut(s) 1012, 1348
Bst4CI ACNGT 1 cut(s) 457
Bst6I CTCTTC 2 cut(s) 744, 1012
BstACI GRCGYC 3 cut(s) 363, 471, 1193
BstDSI CCRYGG 4 cut(s) 475, 685, 1148, 1208
BstF5I GGATG 2 cut(s) 1114, 1825
BstFNI CGCG 1 cut(s) 183
BstH2I RGCGCY 2 cut(s) 1196, 1729
BstHHI GCGC 4 cut(s) 50, 404, 1195, 1728
BstKTI GATC 5 cut(s) 28, 462, 1441, 1611, 1939
BstMAI GTCTC 3 cut(s) 401, 989, 1996
BstMBI GATC 5 cut(s) 25, 459, 1438, 1608, 1936
BstNI CCWGG 2 cut(s) 1012, 1348
BstNSI RCATGY 1 cut(s) 1355
BstSCI CCNGG 4 cut(s) 539, 722, 1010, 1346
BstSFI CTRYAG 3 cut(s) 1094, 1329, 1400
BstUI CGCG 1 cut(s) 183
BstV1I GCAGC 4 cut(s) 835, 1308, 1607, 1615
BstV2I GAAGAC 2 cut(s) 82, 220
BstX2I RGATCY 3 cut(s) 25, 1608, 1936
BstYI RGATCY 3 cut(s) 25, 1608, 1936
Bsu36I CCTNAGG 1 cut(s) 831
BsuI GTATCC 2 cut(s) 1235, 1777
BsuRI GGCC 9 cut(s) 108, 206, 641, 829, 863, 929, 1072, 1476, 2027
BtgI CCRYGG 4 cut(s) 475, 685, 1148, 1208
BtgZI GCGATG 1 cut(s) 962
BtrI CACGTC 2 cut(s) 133, 2021
BtsCI GGATG 2 cut(s) 1114, 1825
BtsI GCAGTG 1 cut(s) 965
BtsIMutI CAGTG 2 cut(s) 965, 1633
CaiI CAGNNNCTG 1 cut(s) 1715
CfoI GCGC 4 cut(s) 50, 404, 1195, 1728
Cfr10I RCCGGY 4 cut(s) 50, 522, 578, 1787
Cfr13I GGNCC 5 cut(s) 247, 280, 639, 1290, 2105
CseI GACGC 3 cut(s) 172, 371, 613
CspAI ACCGGT 1 cut(s) 1787
DinI GGCGCC 1 cut(s) 1194
DpnI GATC 5 cut(s) 27, 461, 1440, 1610, 1938
DpnII GATC 5 cut(s) 25, 459, 1438, 1608, 1936
DraIII CACNNNGTG 1 cut(s) 543
DrdI GACNNNNNNGTC 1 cut(s) 623
DseDI GACNNNNNNGTC 1 cut(s) 623
EaeI YGGCCR 4 cut(s) 204, 861, 1474, 2025
Eam1104I CTCTTC 2 cut(s) 744, 1012
EarI CTCTTC 2 cut(s) 744, 1012
EciI GGCGGA 1 cut(s) 424
Eco130I CCWWGG 4 cut(s) 283, 465, 1082, 1148
Eco147I AGGCCT 2 cut(s) 829, 929
Eco47I GGWCC 4 cut(s) 247, 280, 1290, 2105
Eco47III AGCGCT 1 cut(s) 1727
Eco81I CCTNAGG 1 cut(s) 831
Eco88I CYCGRG 3 cut(s) 391, 418, 1286
EcoRI GAATTC 2 cut(s) 784, 1452
EcoRII CCWGG 2 cut(s) 1010, 1346
EcoT14I CCWWGG 4 cut(s) 283, 465, 1082, 1148
EgeI GGCGCC 1 cut(s) 1194
EheI GGCGCC 1 cut(s) 1194
ErhI CCWWGG 4 cut(s) 283, 465, 1082, 1148
FalI AAGNNNNNCTT 2 cut(s) 1486, 1518
FaqI GGGAC 2 cut(s) 233, 374
FauI CCCGC 5 cut(s) 151, 371, 450, 639, 1236
FblI GTMKAC 2 cut(s) 1312, 2080
Fnu4HI GCNGC 9 cut(s) 55, 181, 376, 849, 861, 945, 1297, 1604, 1621
FokI GGATG 2 cut(s) 1121, 1832
Fsp4HI GCNGC 9 cut(s) 55, 181, 376, 849, 861, 945, 1297, 1604, 1621
FspBI CTAG 3 cut(s) 1449, 1739, 1850
GlaI GCGC 4 cut(s) 49, 403, 1194, 1727
GluI GCNGC 9 cut(s) 55, 181, 376, 849, 861, 945, 1297, 1604, 1621
GsaI CCCAGC 1 cut(s) 1732
GsuI CTGGAG 3 cut(s) 1609, 1928, 1983
HaeII RGCGCY 2 cut(s) 1196, 1729
HaeIII GGCC 9 cut(s) 108, 206, 641, 829, 863, 929, 1072, 1476, 2027
HgaI GACGC 3 cut(s) 172, 371, 613
HhaI GCGC 4 cut(s) 50, 404, 1195, 1728
Hin1I GRCGYC 3 cut(s) 363, 471, 1193
Hin6I GCGC 4 cut(s) 48, 402, 1193, 1726
HinP1I GCGC 4 cut(s) 48, 402, 1193, 1726
HincII GTYRAC 2 cut(s) 1155, 1586
HindII GTYRAC 2 cut(s) 1155, 1586
HindIII AAGCTT 1 cut(s) 19
HphI GGTGA 8 cut(s) 88, 343, 469, 820, 949, 1111, 1194, 1991
Hpy166II GTNNAC 8 cut(s) 79, 295, 475, 559, 1155, 1313, 1586, 2081
Hpy8I GTNNAC 8 cut(s) 79, 295, 475, 559, 1155, 1313, 1586, 2081
Hpy99I CGWCG 7 cut(s) 137, 188, 224, 365, 578, 629, 670
HpyAV CCTTC 6 cut(s) 261, 339, 653, 799, 1821, 2037
HpyCH4III ACNGT 1 cut(s) 457
HpyCH4IV ACGT 5 cut(s) 132, 471, 551, 1259, 2020
HpyCH4V TGCA 8 cut(s) 451, 958, 1331, 1402, 1634, 1751, 1797, 2090
HpySE526I ACGT 5 cut(s) 132, 471, 551, 1259, 2020
Hsp92I GRCGYC 3 cut(s) 363, 471, 1193
HspAI GCGC 4 cut(s) 48, 402, 1193, 1726
KasI GGCGCC 1 cut(s) 1192
Kpn2I TCCGGA 1 cut(s) 319
KroI GCCGGC 3 cut(s) 50, 522, 578
KroNI GCCGGC 3 cut(s) 52, 524, 580
Kzo9I GATC 5 cut(s) 25, 459, 1438, 1608, 1936
LmnI GCTCC 3 cut(s) 546, 1343, 1628
Lsp1109I GCAGC 4 cut(s) 835, 1308, 1607, 1615
LweI GCATC 4 cut(s) 1473, 1621, 1902, 2099
MaeI CTAG 3 cut(s) 1449, 1739, 1850
MaeII ACGT 5 cut(s) 132, 471, 551, 1259, 2020
MaeIII GTNAC 2 cut(s) 1099, 1122
MalI GATC 5 cut(s) 27, 461, 1440, 1610, 1938
MboI GATC 5 cut(s) 25, 459, 1438, 1608, 1936
MboII GAAGA 8 cut(s) 82, 220, 324, 577, 761, 999, 1225, 1570
MflI RGATCY 3 cut(s) 25, 1608, 1936
MhlI GDGCHC 3 cut(s) 120, 551, 968
MlsI TGGCCA 1 cut(s) 1476
MluNI TGGCCA 1 cut(s) 1476
Mly113I GGCGCC 1 cut(s) 1193
MmeI TCCRAC 4 cut(s) 384, 648, 1804, 1964
Mox20I TGGCCA 1 cut(s) 1476
MreI CGCCGGCG 2 cut(s) 50, 578
MroI TCCGGA 1 cut(s) 319
MroNI GCCGGC 3 cut(s) 50, 522, 578
MscI TGGCCA 1 cut(s) 1476
MseI TTAA 7 cut(s) 924, 981, 1053, 1256, 1389, 1953, 1986
MslI CAYNNNNRTG 1 cut(s) 554
Msp20I TGGCCA 1 cut(s) 1476
MspA1I CMGCKG 1 cut(s) 1068
MspR9I CCNGG 4 cut(s) 541, 724, 1012, 1348
MvaI CCWGG 2 cut(s) 1012, 1348
MvnI CGCG 1 cut(s) 183
NaeI GCCGGC 3 cut(s) 52, 524, 580
NarI GGCGCC 1 cut(s) 1193
NciI CCSGG 2 cut(s) 541, 724
NcoI CCATGG 1 cut(s) 1148
NdeII GATC 5 cut(s) 25, 459, 1438, 1608, 1936
NgoMIV GCCGGC 3 cut(s) 50, 522, 578
NlaIV GGNNCC 8 cut(s) 27, 249, 514, 683, 1033, 1194, 1291, 1345
NmeAIII GCCGAG 3 cut(s) 139, 430, 911
NmuCI GTSAC 1 cut(s) 1099
NspI RCATGY 1 cut(s) 1355
OliI CACNNNNGTG 1 cut(s) 554
PaeI GCATGC 1 cut(s) 1355
PceI AGGCCT 2 cut(s) 829, 929
PcsI WCGNNNNNNNCGW 4 cut(s) 468, 477, 579, 713
PdiI GCCGGC 3 cut(s) 52, 524, 580
PfeI GAWTC 6 cut(s) 159, 192, 237, 316, 631, 671
PflFI GACNNNGTC 1 cut(s) 224
PflMI CCANNNNNTGG 1 cut(s) 543
PfoI TCCNGGA 1 cut(s) 1010
PinAI ACCGGT 1 cut(s) 1787
PkrI GCNGC 9 cut(s) 56, 182, 377, 850, 862, 946, 1298, 1605, 1622
PluTI GGCGCC 1 cut(s) 1196
Psp1406I AACGTT 1 cut(s) 1259
Psp6I CCWGG 2 cut(s) 1010, 1346
PspFI CCCAGC 1 cut(s) 1728
PspGI CCWGG 2 cut(s) 1010, 1346
PspN4I GGNNCC 8 cut(s) 27, 249, 514, 683, 1033, 1194, 1291, 1345
PspPI GGNCC 5 cut(s) 247, 280, 639, 1290, 2105
PsrI GAACNNNNNNTAC 2 cut(s) 710, 742
PstI CTGCAG 2 cut(s) 1333, 1404
PstNI CAGNNNCTG 1 cut(s) 1715
PsuI RGATCY 3 cut(s) 25, 1608, 1936
PsyI GACNNNGTC 1 cut(s) 224
RseI CAYNNNNRTG 1 cut(s) 554
SaqAI TTAA 7 cut(s) 924, 981, 1053, 1256, 1389, 1953, 1986
SatI GCNGC 9 cut(s) 55, 181, 376, 849, 861, 945, 1297, 1604, 1621
Sau3AI GATC 5 cut(s) 25, 459, 1438, 1608, 1936
Sau96I GGNCC 5 cut(s) 247, 280, 639, 1290, 2105
SbfI CCTGCAGG 1 cut(s) 1333
ScrFI CCNGG 4 cut(s) 541, 724, 1012, 1348
SdaI CCTGCAGG 1 cut(s) 1333
SduI GDGCHC 3 cut(s) 120, 551, 968
SfaNI GCATC 4 cut(s) 1473, 1621, 1902, 2099
SfcI CTRYAG 3 cut(s) 1094, 1329, 1400
SfoI GGCGCC 1 cut(s) 1194
SgrAI CRCCGGYG 2 cut(s) 50, 578
SinI GGWCC 4 cut(s) 247, 280, 1290, 2105
SmiMI CAYNNNNRTG 1 cut(s) 554
SmlI CTYRAG 2 cut(s) 102, 1721
SmoI CTYRAG 2 cut(s) 102, 1721
SphI GCATGC 1 cut(s) 1355
Sse8387I CCTGCAGG 1 cut(s) 1333
SseBI AGGCCT 2 cut(s) 829, 929
SspDI GGCGCC 1 cut(s) 1192
SspMI CTAG 3 cut(s) 1449, 1739, 1850
StuI AGGCCT 2 cut(s) 829, 929
StyD4I CCNGG 4 cut(s) 539, 722, 1010, 1346
StyI CCWWGG 4 cut(s) 283, 465, 1082, 1148
TaaI ACNGT 1 cut(s) 457
TaiI ACGT 5 cut(s) 135, 474, 554, 1262, 2023
TaqI TCGA 4 cut(s) 135, 587, 788, 1437
TauI GCSGC 5 cut(s) 57, 183, 378, 863, 947
TfiI GAWTC 6 cut(s) 159, 192, 237, 316, 631, 671
Tru1I TTAA 7 cut(s) 924, 981, 1053, 1256, 1389, 1953, 1986
Tru9I TTAA 7 cut(s) 924, 981, 1053, 1256, 1389, 1953, 1986
TscAI CASTG 2 cut(s) 965, 1633
TseFI GTSAC 1 cut(s) 1099
TseI GCWGC 4 cut(s) 848, 1296, 1603, 1620
Tsp45I GTSAC 1 cut(s) 1099
TspDTI ATGAA 6 cut(s) 17, 762, 1015, 1795, 1983, 2046
TspGWI ACGGA 4 cut(s) 142, 376, 882, 1225
TspRI CASTG 2 cut(s) 965, 1633
Tth111I GACNNNGTC 1 cut(s) 224
Van91I CCANNNNNTGG 1 cut(s) 543
VpaK11BI GGWCC 4 cut(s) 247, 280, 1290, 2105
XapI RAATTY 6 cut(s) 784, 1171, 1444, 1452, 1763, 1982
XbaI TCTAGA 2 cut(s) 1448, 1849
XceI RCATGY 1 cut(s) 1355
XcmI CCANNNNNNNNNTGG 3 cut(s) 241, 692, 1186
XmiI GTMKAC 2 cut(s) 1312, 2080
XspI CTAG 3 cut(s) 1449, 1739, 1850
ZraI GACGTC 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.