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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 624 |
| Acc65I | GGTACC | 1 cut(s) | 301 |
| AccB1I | GGYRCC | 1 cut(s) | 301 |
| AclWI | GGATC | 1 cut(s) | 260 |
| AcsI | RAATTY | 1 cut(s) | 508 |
| AcuI | CTGAAG | 1 cut(s) | 97 |
| AcyI | GRCGYC | 1 cut(s) | 621 |
| AfaI | GTAC | 3 cut(s) | 303, 316, 366 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 275, 311 |
| AgsI | TTSAA | 1 cut(s) | 513 |
| AluBI | AGCT | 3 cut(s) | 96, 117, 609 |
| AluI | AGCT | 3 cut(s) | 96, 117, 609 |
| Alw21I | GWGCWC | 1 cut(s) | 157 |
| Alw26I | GTCTC | 1 cut(s) | 386 |
| Alw44I | GTGCAC | 1 cut(s) | 153 |
| AlwI | GGATC | 1 cut(s) | 260 |
| AoxI | GGCC | 2 cut(s) | 278, 326 |
| ApaLI | GTGCAC | 1 cut(s) | 153 |
| ApeKI | GCWGC | 2 cut(s) | 449, 609 |
| ApoI | RAATTY | 1 cut(s) | 508 |
| AseI | ATTAAT | 1 cut(s) | 399 |
| Asp718I | GGTACC | 1 cut(s) | 301 |
| AspS9I | GGNCC | 2 cut(s) | 278, 646 |
| AsuHPI | GGTGA | 1 cut(s) | 247 |
| AsuII | TTCGAA | 2 cut(s) | 205, 523 |
| AvaII | GGWCC | 1 cut(s) | 646 |
| AxyI | CCTNAGG | 1 cut(s) | 282 |
| BaeGI | GKGCMC | 2 cut(s) | 157, 533 |
| BanI | GGYRCC | 1 cut(s) | 301 |
| BauI | CACGAG | 1 cut(s) | 150 |
| Bbv12I | GWGCWC | 1 cut(s) | 157 |
| BbvI | GCAGC | 2 cut(s) | 436, 596 |
| BccI | CCATC | 6 cut(s) | 292, 313, 365, 452, 571, 650 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 428, 462 |
| BcoDI | GTCTC | 1 cut(s) | 386 |
| BfaI | CTAG | 3 cut(s) | 368, 557, 670 |
| BisI | GCNGC | 2 cut(s) | 450, 610 |
| BlsI | GCNGC | 2 cut(s) | 451, 611 |
| BmcAI | AGTACT | 1 cut(s) | 366 |
| Bme18I | GGWCC | 1 cut(s) | 646 |
| BmgT120I | GGNCC | 2 cut(s) | 278, 646 |
| BmiI | GGNNCC | 2 cut(s) | 258, 303 |
| BmsI | GCATC | 2 cut(s) | 163, 488 |
| BoxI | GACNNNNGTC | 1 cut(s) | 380 |
| Bpu14I | TTCGAA | 2 cut(s) | 205, 523 |
| BpuEI | CTTGAG | 1 cut(s) | 634 |
| BsaHI | GRCGYC | 1 cut(s) | 621 |
| BsaWI | WCCGGW | 1 cut(s) | 51 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 275, 311 |
| Bse118I | RCCGGY | 1 cut(s) | 475 |
| Bse1I | ACTGG | 1 cut(s) | 194 |
| Bse21I | CCTNAGG | 1 cut(s) | 282 |
| BseGI | GGATG | 2 cut(s) | 463, 479 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 275, 311 |
| BseMII | CTCAG | 2 cut(s) | 273, 324 |
| BseNI | ACTGG | 1 cut(s) | 194 |
| BseRI | GAGGAG | 1 cut(s) | 299 |
| BseSI | GKGCMC | 2 cut(s) | 157, 533 |
| BseXI | GCAGC | 2 cut(s) | 436, 596 |
| BseYI | CCCAGC | 1 cut(s) | 134 |
| BsgI | GTGCAG | 1 cut(s) | 339 |
| BshFI | GGCC | 2 cut(s) | 280, 328 |
| BshNI | GGYRCC | 1 cut(s) | 301 |
| BsiHKAI | GWGCWC | 1 cut(s) | 157 |
| BsiSI | CCGG | 2 cut(s) | 52, 476 |
| BslFI | GGGAC | 3 cut(s) | 117, 388, 632 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 275, 311 |
| BsmAI | GTCTC | 1 cut(s) | 386 |
| BsmFI | GGGAC | 3 cut(s) | 117, 388, 632 |
| BsnI | GGCC | 2 cut(s) | 280, 328 |
| Bsp119I | TTCGAA | 2 cut(s) | 205, 523 |
| Bsp1286I | GDGCHC | 2 cut(s) | 157, 533 |
| Bsp143I | GATC | 2 cut(s) | 127, 265 |
| BspANI | GGCC | 2 cut(s) | 280, 328 |
| BspCNI | CTCAG | 2 cut(s) | 274, 325 |
| BspLI | GGNNCC | 2 cut(s) | 258, 303 |
| BspPI | GGATC | 1 cut(s) | 260 |
| BspT104I | TTCGAA | 2 cut(s) | 205, 523 |
| BspT107I | GGYRCC | 1 cut(s) | 301 |
| BsrFI | RCCGGY | 1 cut(s) | 475 |
| BsrI | ACTGG | 1 cut(s) | 194 |
| BssAI | RCCGGY | 1 cut(s) | 475 |
| BssMI | GATC | 2 cut(s) | 127, 265 |
| BssNI | GRCGYC | 1 cut(s) | 621 |
| BssSI | CACGAG | 1 cut(s) | 150 |
| Bst2BI | CACGAG | 1 cut(s) | 150 |
| Bst4CI | ACNGT | 4 cut(s) | 22, 82, 252, 379 |
| BstACI | GRCGYC | 1 cut(s) | 621 |
| BstBI | TTCGAA | 2 cut(s) | 205, 523 |
| BstDEI | CTNAG | 2 cut(s) | 282, 333 |
| BstF5I | GGATG | 2 cut(s) | 463, 479 |
| BstKTI | GATC | 2 cut(s) | 130, 268 |
| BstMAI | GTCTC | 1 cut(s) | 386 |
| BstMBI | GATC | 2 cut(s) | 127, 265 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 380 |
| BstSLI | GKGCMC | 2 cut(s) | 157, 533 |
| BstV1I | GCAGC | 2 cut(s) | 436, 596 |
| Bsu36I | CCTNAGG | 1 cut(s) | 282 |
| BsuRI | GGCC | 2 cut(s) | 280, 328 |
| BtsCI | GGATG | 2 cut(s) | 463, 479 |
| BtsIMutI | CAGTG | 1 cut(s) | 201 |
| Cfr10I | RCCGGY | 1 cut(s) | 475 |
| Cfr13I | GGNCC | 2 cut(s) | 278, 646 |
| CseI | GACGC | 1 cut(s) | 508 |
| Csp6I | GTAC | 3 cut(s) | 302, 315, 365 |
| CviAII | CATG | 5 cut(s) | 389, 416, 488, 503, 640 |
| CviQI | GTAC | 3 cut(s) | 302, 315, 365 |
| DdeI | CTNAG | 2 cut(s) | 282, 333 |
| DpnI | GATC | 2 cut(s) | 129, 267 |
| DpnII | GATC | 2 cut(s) | 127, 265 |
| DraI | TTTAAA | 2 cut(s) | 121, 547 |
| Eco32I | GATATC | 1 cut(s) | 570 |
| Eco47I | GGWCC | 1 cut(s) | 646 |
| Eco57I | CTGAAG | 1 cut(s) | 97 |
| Eco81I | CCTNAGG | 1 cut(s) | 282 |
| EcoO109I | RGGNCCY | 1 cut(s) | 646 |
| EcoRV | GATATC | 1 cut(s) | 570 |
| EcoT22I | ATGCAT | 1 cut(s) | 641 |
| FaeI | CATG | 5 cut(s) | 392, 419, 491, 506, 643 |
| FaiI | YATR | 8 cut(s) | 390, 417, 489, 496, 504, 635, 637, 641 |
| FaqI | GGGAC | 3 cut(s) | 117, 388, 632 |
| FatI | CATG | 5 cut(s) | 388, 415, 487, 502, 639 |
| Fnu4HI | GCNGC | 2 cut(s) | 450, 610 |
| FokI | GGATG | 2 cut(s) | 466, 470 |
| Fsp4HI | GCNGC | 2 cut(s) | 450, 610 |
| FspBI | CTAG | 3 cut(s) | 368, 557, 670 |
| GluI | GCNGC | 2 cut(s) | 450, 610 |
| GsaI | CCCAGC | 1 cut(s) | 138 |
| HaeIII | GGCC | 2 cut(s) | 280, 328 |
| HapII | CCGG | 2 cut(s) | 52, 476 |
| HgaI | GACGC | 1 cut(s) | 508 |
| Hin1I | GRCGYC | 1 cut(s) | 621 |
| Hin1II | CATG | 5 cut(s) | 392, 419, 491, 506, 643 |
| HincII | GTYRAC | 1 cut(s) | 385 |
| HindII | GTYRAC | 1 cut(s) | 385 |
| HinfI | GANTC | 2 cut(s) | 338, 553 |
| HpaII | CCGG | 2 cut(s) | 52, 476 |
| HphI | GGTGA | 1 cut(s) | 247 |
| Hpy166II | GTNNAC | 3 cut(s) | 155, 245, 385 |
| Hpy188I | TCNGA | 2 cut(s) | 229, 261 |
| Hpy188III | TCNNGA | 3 cut(s) | 76, 513, 557 |
| Hpy8I | GTNNAC | 3 cut(s) | 155, 245, 385 |
| Hpy99I | CGWCG | 1 cut(s) | 577 |
| HpyAV | CCTTC | 3 cut(s) | 226, 575, 637 |
| HpyCH4III | ACNGT | 4 cut(s) | 22, 82, 252, 379 |
| HpyCH4IV | ACGT | 1 cut(s) | 621 |
| HpyCH4V | TGCA | 7 cut(s) | 17, 40, 155, 293, 323, 356, 639 |
| HpyF3I | CTNAG | 2 cut(s) | 282, 333 |
| HpySE526I | ACGT | 1 cut(s) | 621 |
| Hsp92I | GRCGYC | 1 cut(s) | 621 |
| Hsp92II | CATG | 5 cut(s) | 392, 419, 491, 506, 643 |
| KpnI | GGTACC | 1 cut(s) | 305 |
| Kzo9I | GATC | 2 cut(s) | 127, 265 |
| LmnI | GCTCC | 3 cut(s) | 93, 181, 262 |
| Lsp1109I | GCAGC | 2 cut(s) | 436, 596 |
| LweI | GCATC | 2 cut(s) | 163, 488 |
| MaeI | CTAG | 3 cut(s) | 368, 557, 670 |
| MaeII | ACGT | 1 cut(s) | 621 |
| MaeIII | GTNAC | 2 cut(s) | 349, 403 |
| MalI | GATC | 2 cut(s) | 129, 267 |
| MboI | GATC | 2 cut(s) | 127, 265 |
| MhlI | GDGCHC | 2 cut(s) | 157, 533 |
| MluCI | AATT | 5 cut(s) | 67, 182, 396, 508, 651 |
| MlyI | GAGTC | 1 cut(s) | 332 |
| Mph1103I | ATGCAT | 1 cut(s) | 641 |
| MseI | TTAA | 3 cut(s) | 120, 399, 546 |
| MspI | CCGG | 2 cut(s) | 52, 476 |
| NdeII | GATC | 2 cut(s) | 127, 265 |
| NlaIII | CATG | 5 cut(s) | 392, 419, 491, 506, 643 |
| NlaIV | GGNNCC | 2 cut(s) | 258, 303 |
| NmuCI | GTSAC | 2 cut(s) | 349, 403 |
| NsiI | ATGCAT | 1 cut(s) | 641 |
| NspV | TTCGAA | 2 cut(s) | 205, 523 |
| PfeI | GAWTC | 1 cut(s) | 553 |
| PkrI | GCNGC | 2 cut(s) | 451, 611 |
| PleI | GAGTC | 1 cut(s) | 332 |
| PpsI | GAGTC | 1 cut(s) | 332 |
| PpuMI | RGGWCCY | 1 cut(s) | 646 |
| PshAI | GACNNNNGTC | 1 cut(s) | 380 |
| PshBI | ATTAAT | 1 cut(s) | 399 |
| Psp5II | RGGWCCY | 1 cut(s) | 646 |
| PspFI | CCCAGC | 1 cut(s) | 134 |
| PspN4I | GGNNCC | 2 cut(s) | 258, 303 |
| PspPI | GGNCC | 2 cut(s) | 278, 646 |
| PspPPI | RGGWCCY | 1 cut(s) | 646 |
| RsaI | GTAC | 3 cut(s) | 303, 316, 366 |
| RsaNI | GTAC | 3 cut(s) | 302, 315, 365 |
| SaqAI | TTAA | 3 cut(s) | 120, 399, 546 |
| SatI | GCNGC | 2 cut(s) | 450, 610 |
| Sau3AI | GATC | 2 cut(s) | 127, 265 |
| Sau96I | GGNCC | 2 cut(s) | 278, 646 |
| ScaI | AGTACT | 1 cut(s) | 366 |
| SchI | GAGTC | 1 cut(s) | 332 |
| SduI | GDGCHC | 2 cut(s) | 157, 533 |
| SfaNI | GCATC | 2 cut(s) | 163, 488 |
| SfuI | TTCGAA | 2 cut(s) | 205, 523 |
| SinI | GGWCC | 1 cut(s) | 646 |
| SmlI | CTYRAG | 1 cut(s) | 613 |
| SmoI | CTYRAG | 1 cut(s) | 613 |
| Sse9I | AATT | 5 cut(s) | 67, 182, 396, 508, 651 |
| SspI | AATATT | 1 cut(s) | 274 |
| SspMI | CTAG | 3 cut(s) | 368, 557, 670 |
| TaaI | ACNGT | 4 cut(s) | 22, 82, 252, 379 |
| TaiI | ACGT | 1 cut(s) | 624 |
| TaqI | TCGA | 4 cut(s) | 205, 438, 523, 575 |
| TasI | AATT | 5 cut(s) | 67, 182, 396, 508, 651 |
| TatI | WGTACW | 1 cut(s) | 364 |
| TfiI | GAWTC | 1 cut(s) | 553 |
| Tru1I | TTAA | 3 cut(s) | 120, 399, 546 |
| Tru9I | TTAA | 3 cut(s) | 120, 399, 546 |
| TscAI | CASTG | 1 cut(s) | 201 |
| TseFI | GTSAC | 2 cut(s) | 349, 403 |
| TseI | GCWGC | 2 cut(s) | 449, 609 |
| Tsp45I | GTSAC | 2 cut(s) | 349, 403 |
| TspDTI | ATGAA | 3 cut(s) | 426, 519, 656 |
| TspRI | CASTG | 1 cut(s) | 201 |
| VneI | GTGCAC | 1 cut(s) | 153 |
| VpaK11BI | GGWCC | 1 cut(s) | 646 |
| VspI | ATTAAT | 1 cut(s) | 399 |
| XapI | RAATTY | 1 cut(s) | 508 |
| XbaI | TCTAGA | 1 cut(s) | 556 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 492 |
| XspI | CTAG | 3 cut(s) | 368, 557, 670 |
| ZraI | GACGTC | 1 cut(s) | 622 |
| ZrmI | AGTACT | 1 cut(s) | 366 |
| Zsp2I | ATGCAT | 1 cut(s) | 641 |