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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 253 |
| AccB1I | GGYRCC | 2 cut(s) | 253, 475 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 308 |
| AciI | CCGC | 1 cut(s) | 224 |
| AcsI | RAATTY | 1 cut(s) | 67 |
| AdeI | CACNNNGTG | 1 cut(s) | 499 |
| AfaI | GTAC | 3 cut(s) | 154, 255, 363 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 308, 526 |
| AflIII | ACRYGT | 1 cut(s) | 436 |
| AjnI | CCWGG | 1 cut(s) | 387 |
| AluBI | AGCT | 4 cut(s) | 117, 374, 491, 566 |
| AluI | AGCT | 4 cut(s) | 117, 374, 491, 566 |
| Alw21I | GWGCWC | 1 cut(s) | 579 |
| Alw26I | GTCTC | 2 cut(s) | 327, 398 |
| Ama87I | CYCGRG | 1 cut(s) | 534 |
| AoxI | GGCC | 1 cut(s) | 517 |
| ApeKI | GCWGC | 4 cut(s) | 61, 176, 488, 502 |
| ApoI | RAATTY | 1 cut(s) | 67 |
| Asp718I | GGTACC | 1 cut(s) | 253 |
| AspLEI | GCGC | 1 cut(s) | 61 |
| AspS9I | GGNCC | 2 cut(s) | 218, 391 |
| AsuC2I | CCSGG | 2 cut(s) | 421, 521 |
| AsuHPI | GGTGA | 2 cut(s) | 299, 563 |
| AvaI | CYCGRG | 1 cut(s) | 534 |
| AvaII | GGWCC | 2 cut(s) | 218, 391 |
| BaeGI | GKGCMC | 1 cut(s) | 480 |
| BanI | GGYRCC | 2 cut(s) | 253, 475 |
| Bbv12I | GWGCWC | 1 cut(s) | 579 |
| BbvI | GCAGC | 4 cut(s) | 48, 163, 500, 514 |
| BccI | CCATC | 4 cut(s) | 302, 310, 362, 518 |
| BciT130I | CCWGG | 1 cut(s) | 389 |
| BcnI | CCSGG | 2 cut(s) | 421, 521 |
| BcoDI | GTCTC | 2 cut(s) | 327, 398 |
| BfaI | CTAG | 1 cut(s) | 567 |
| BfmI | CTRYAG | 1 cut(s) | 339 |
| BisI | GCNGC | 4 cut(s) | 62, 177, 489, 503 |
| BlsI | GCNGC | 4 cut(s) | 63, 178, 490, 504 |
| BmcAI | AGTACT | 1 cut(s) | 363 |
| Bme1390I | CCNGG | 3 cut(s) | 389, 421, 521 |
| Bme18I | GGWCC | 2 cut(s) | 218, 391 |
| BmeT110I | CYCGRG | 1 cut(s) | 534 |
| BmgT120I | GGNCC | 2 cut(s) | 218, 391 |
| BmiI | GGNNCC | 2 cut(s) | 255, 477 |
| BmrFI | CCNGG | 3 cut(s) | 389, 421, 521 |
| BmsI | GCATC | 2 cut(s) | 163, 599 |
| BpuMI | CCSGG | 2 cut(s) | 421, 521 |
| BsaJI | CCNNGG | 1 cut(s) | 420 |
| BsaWI | WCCGGW | 1 cut(s) | 51 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 324, 354 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 308, 526 |
| Bse1I | ACTGG | 2 cut(s) | 359, 369 |
| BseBI | CCWGG | 1 cut(s) | 389 |
| BseDI | CCNNGG | 1 cut(s) | 420 |
| BseGI | GGATG | 4 cut(s) | 178, 355, 373, 529 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 308, 526 |
| BseMII | CTCAG | 2 cut(s) | 393, 399 |
| BseNI | ACTGG | 2 cut(s) | 359, 369 |
| BseSI | GKGCMC | 1 cut(s) | 480 |
| BseXI | GCAGC | 4 cut(s) | 48, 163, 500, 514 |
| BsgI | GTGCAG | 1 cut(s) | 521 |
| BshFI | GGCC | 1 cut(s) | 519 |
| BshNI | GGYRCC | 2 cut(s) | 253, 475 |
| BsiHKAI | GWGCWC | 1 cut(s) | 579 |
| BsiHKCI | CYCGRG | 1 cut(s) | 534 |
| BsiSI | CCGG | 3 cut(s) | 52, 420, 520 |
| BslFI | GGGAC | 3 cut(s) | 127, 481, 590 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 308, 526 |
| BsmAI | GTCTC | 2 cut(s) | 327, 398 |
| BsmFI | GGGAC | 3 cut(s) | 127, 481, 590 |
| BsmI | GAATGC | 1 cut(s) | 355 |
| BsnI | GGCC | 1 cut(s) | 519 |
| BsoBI | CYCGRG | 1 cut(s) | 534 |
| Bsp1286I | GDGCHC | 2 cut(s) | 480, 579 |
| Bsp143I | GATC | 1 cut(s) | 481 |
| BspACI | CCGC | 1 cut(s) | 224 |
| BspANI | GGCC | 1 cut(s) | 519 |
| BspCNI | CTCAG | 2 cut(s) | 394, 400 |
| BspLI | GGNNCC | 2 cut(s) | 255, 477 |
| BspT107I | GGYRCC | 2 cut(s) | 253, 475 |
| BsrI | ACTGG | 2 cut(s) | 359, 369 |
| BssECI | CCNNGG | 1 cut(s) | 420 |
| BssMI | GATC | 1 cut(s) | 481 |
| Bst2UI | CCWGG | 1 cut(s) | 389 |
| Bst4CI | ACNGT | 4 cut(s) | 22, 82, 472, 499 |
| Bst6I | CTCTTC | 1 cut(s) | 285 |
| BstC8I | GCNNGC | 2 cut(s) | 327, 507 |
| BstDEI | CTNAG | 2 cut(s) | 402, 408 |
| BstF5I | GGATG | 4 cut(s) | 178, 355, 373, 529 |
| BstHHI | GCGC | 1 cut(s) | 61 |
| BstKTI | GATC | 1 cut(s) | 484 |
| BstMAI | GTCTC | 2 cut(s) | 327, 398 |
| BstMBI | GATC | 1 cut(s) | 481 |
| BstNI | CCWGG | 1 cut(s) | 389 |
| BstNSI | RCATGY | 1 cut(s) | 440 |
| BstSCI | CCNGG | 3 cut(s) | 387, 419, 519 |
| BstSFI | CTRYAG | 1 cut(s) | 339 |
| BstSLI | GKGCMC | 1 cut(s) | 480 |
| BstV1I | GCAGC | 4 cut(s) | 48, 163, 500, 514 |
| BsuRI | GGCC | 1 cut(s) | 519 |
| BtsCI | GGATG | 4 cut(s) | 178, 355, 373, 529 |
| BtsI | GCAGTG | 1 cut(s) | 447 |
| BtsIMutI | CAGTG | 1 cut(s) | 447 |
| Cac8I | GCNNGC | 2 cut(s) | 327, 507 |
| CfoI | GCGC | 1 cut(s) | 61 |
| Cfr13I | GGNCC | 2 cut(s) | 218, 391 |
| Csp6I | GTAC | 3 cut(s) | 153, 254, 362 |
| CviAII | CATG | 4 cut(s) | 104, 437, 572, 586 |
| CviJI | RGCY | 8 cut(s) | 5, 117, 374, 413, 491, 519, 530, 566 |
| CviKI_1 | RGCY | 8 cut(s) | 5, 117, 374, 413, 491, 519, 530, 566 |
| CviQI | GTAC | 3 cut(s) | 153, 254, 362 |
| DdeI | CTNAG | 2 cut(s) | 402, 408 |
| DpnI | GATC | 1 cut(s) | 483 |
| DpnII | GATC | 1 cut(s) | 481 |
| DraIII | CACNNNGTG | 1 cut(s) | 499 |
| Eam1104I | CTCTTC | 1 cut(s) | 285 |
| EarI | CTCTTC | 1 cut(s) | 285 |
| Eco47I | GGWCC | 2 cut(s) | 218, 391 |
| Eco88I | CYCGRG | 1 cut(s) | 534 |
| EcoRII | CCWGG | 1 cut(s) | 387 |
| FaeI | CATG | 4 cut(s) | 107, 440, 575, 589 |
| FaiI | YATR | 5 cut(s) | 105, 314, 438, 573, 587 |
| FaqI | GGGAC | 3 cut(s) | 127, 481, 590 |
| FatI | CATG | 4 cut(s) | 103, 436, 571, 585 |
| Fnu4HI | GCNGC | 4 cut(s) | 62, 177, 489, 503 |
| FokI | GGATG | 4 cut(s) | 185, 342, 380, 536 |
| Fsp4HI | GCNGC | 4 cut(s) | 62, 177, 489, 503 |
| FspBI | CTAG | 1 cut(s) | 567 |
| GlaI | GCGC | 1 cut(s) | 60 |
| GluI | GCNGC | 4 cut(s) | 62, 177, 489, 503 |
| HaeIII | GGCC | 1 cut(s) | 519 |
| HapII | CCGG | 3 cut(s) | 52, 420, 520 |
| HhaI | GCGC | 1 cut(s) | 61 |
| Hin1II | CATG | 4 cut(s) | 107, 440, 575, 589 |
| Hin6I | GCGC | 1 cut(s) | 59 |
| HinP1I | GCGC | 1 cut(s) | 59 |
| HinfI | GANTC | 2 cut(s) | 275, 335 |
| HpaII | CCGG | 3 cut(s) | 52, 420, 520 |
| HphI | GGTGA | 2 cut(s) | 299, 563 |
| Hpy166II | GTNNAC | 4 cut(s) | 155, 242, 385, 560 |
| Hpy188I | TCNGA | 1 cut(s) | 307 |
| Hpy188III | TCNNGA | 1 cut(s) | 76 |
| Hpy8I | GTNNAC | 4 cut(s) | 155, 242, 385, 560 |
| HpyAV | CCTTC | 3 cut(s) | 24, 163, 509 |
| HpyCH4III | ACNGT | 4 cut(s) | 22, 82, 472, 499 |
| HpyCH4IV | ACGT | 1 cut(s) | 416 |
| HpyCH4V | TGCA | 8 cut(s) | 40, 103, 179, 325, 353, 488, 502, 612 |
| HpyF3I | CTNAG | 2 cut(s) | 402, 408 |
| HpySE526I | ACGT | 1 cut(s) | 416 |
| Hsp92II | CATG | 4 cut(s) | 107, 440, 575, 589 |
| HspAI | GCGC | 1 cut(s) | 59 |
| KpnI | GGTACC | 1 cut(s) | 257 |
| Kzo9I | GATC | 1 cut(s) | 481 |
| LmnI | GCTCC | 1 cut(s) | 371 |
| Lsp1109I | GCAGC | 4 cut(s) | 48, 163, 500, 514 |
| LweI | GCATC | 2 cut(s) | 163, 599 |
| MaeI | CTAG | 1 cut(s) | 567 |
| MaeII | ACGT | 1 cut(s) | 416 |
| MalI | GATC | 1 cut(s) | 483 |
| MboI | GATC | 1 cut(s) | 481 |
| MboII | GAAGA | 1 cut(s) | 302 |
| MhlI | GDGCHC | 2 cut(s) | 480, 579 |
| MluCI | AATT | 1 cut(s) | 67 |
| MlyI | GAGTC | 2 cut(s) | 284, 329 |
| MnlI | CCTC | 6 cut(s) | 21, 155, 159, 258, 403, 542 |
| MseI | TTAA | 1 cut(s) | 120 |
| MslI | CAYNNNNRTG | 1 cut(s) | 441 |
| MspI | CCGG | 3 cut(s) | 52, 420, 520 |
| MspR9I | CCNGG | 3 cut(s) | 389, 421, 521 |
| Mva1269I | GAATGC | 1 cut(s) | 355 |
| MvaI | CCWGG | 1 cut(s) | 389 |
| NciI | CCSGG | 2 cut(s) | 421, 521 |
| NdeII | GATC | 1 cut(s) | 481 |
| NlaIII | CATG | 4 cut(s) | 107, 440, 575, 589 |
| NlaIV | GGNNCC | 2 cut(s) | 255, 477 |
| NspI | RCATGY | 1 cut(s) | 440 |
| PaeR7I | CTCGAG | 1 cut(s) | 534 |
| PciI | ACATGT | 1 cut(s) | 436 |
| PctI | GAATGC | 1 cut(s) | 355 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 308 |
| PkrI | GCNGC | 4 cut(s) | 63, 178, 490, 504 |
| PleI | GAGTC | 2 cut(s) | 283, 329 |
| PpsI | GAGTC | 2 cut(s) | 283, 329 |
| PscI | ACATGT | 1 cut(s) | 436 |
| Psp6I | CCWGG | 1 cut(s) | 387 |
| PspGI | CCWGG | 1 cut(s) | 387 |
| PspN4I | GGNNCC | 2 cut(s) | 255, 477 |
| PspPI | GGNCC | 2 cut(s) | 218, 391 |
| PspXI | VCTCGAGB | 1 cut(s) | 534 |
| RsaI | GTAC | 3 cut(s) | 154, 255, 363 |
| RsaNI | GTAC | 3 cut(s) | 153, 254, 362 |
| RseI | CAYNNNNRTG | 1 cut(s) | 441 |
| SaqAI | TTAA | 1 cut(s) | 120 |
| SatI | GCNGC | 4 cut(s) | 62, 177, 489, 503 |
| Sau3AI | GATC | 1 cut(s) | 481 |
| Sau96I | GGNCC | 2 cut(s) | 218, 391 |
| ScaI | AGTACT | 1 cut(s) | 363 |
| SchI | GAGTC | 2 cut(s) | 284, 329 |
| ScrFI | CCNGG | 3 cut(s) | 389, 421, 521 |
| SduI | GDGCHC | 2 cut(s) | 480, 579 |
| SetI | ASST | 9 cut(s) | 119, 196, 250, 346, 376, 419, 493, 553, 568 |
| SfaNI | GCATC | 2 cut(s) | 163, 599 |
| SfcI | CTRYAG | 1 cut(s) | 339 |
| Sfr274I | CTCGAG | 1 cut(s) | 534 |
| SinI | GGWCC | 2 cut(s) | 218, 391 |
| SlaI | CTCGAG | 1 cut(s) | 534 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 441 |
| SmlI | CTYRAG | 1 cut(s) | 534 |
| SmoI | CTYRAG | 1 cut(s) | 534 |
| Sse9I | AATT | 1 cut(s) | 67 |
| SsiI | CCGC | 1 cut(s) | 224 |
| SspI | AATATT | 1 cut(s) | 271 |
| SspMI | CTAG | 1 cut(s) | 567 |
| StyD4I | CCNGG | 3 cut(s) | 387, 419, 519 |
| TaaI | ACNGT | 4 cut(s) | 22, 82, 472, 499 |
| TaiI | ACGT | 1 cut(s) | 419 |
| TaqI | TCGA | 2 cut(s) | 17, 535 |
| TasI | AATT | 1 cut(s) | 67 |
| TatI | WGTACW | 1 cut(s) | 361 |
| Tru1I | TTAA | 1 cut(s) | 120 |
| Tru9I | TTAA | 1 cut(s) | 120 |
| TscAI | CASTG | 1 cut(s) | 454 |
| TseI | GCWGC | 4 cut(s) | 61, 176, 488, 502 |
| TspDTI | ATGAA | 1 cut(s) | 60 |
| TspRI | CASTG | 1 cut(s) | 454 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 308 |
| VpaK11BI | GGWCC | 2 cut(s) | 218, 391 |
| XapI | RAATTY | 1 cut(s) | 67 |
| XceI | RCATGY | 1 cut(s) | 440 |
| XhoI | CTCGAG | 1 cut(s) | 534 |
| XspI | CTAG | 1 cut(s) | 567 |
| ZrmI | AGTACT | 1 cut(s) | 363 |