ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 44 |
| Acc36I | ACCTGC | 1 cut(s) | 889 |
| AccB1I | GGYRCC | 1 cut(s) | 788 |
| AccI | GTMKAC | 1 cut(s) | 946 |
| AccII | CGCG | 1 cut(s) | 468 |
| AccIII | TCCGGA | 2 cut(s) | 135, 342 |
| AciI | CCGC | 1 cut(s) | 811 |
| AclWI | GGATC | 4 cut(s) | 228, 353, 684, 1013 |
| AcoI | YGGCCR | 1 cut(s) | 181 |
| AcsI | RAATTY | 2 cut(s) | 413, 983 |
| AcvI | CACGTG | 1 cut(s) | 179 |
| AcyI | GRCGYC | 1 cut(s) | 41 |
| AfaI | GTAC | 2 cut(s) | 254, 610 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 52, 367, 643, 916 |
| AflIII | ACRYGT | 1 cut(s) | 611 |
| AgsI | TTSAA | 4 cut(s) | 166, 316, 557, 739 |
| AjnI | CCWGG | 4 cut(s) | 45, 171, 248, 523 |
| AluBI | AGCT | 4 cut(s) | 436, 521, 673, 841 |
| AluI | AGCT | 4 cut(s) | 436, 521, 673, 841 |
| Alw21I | GWGCWC | 1 cut(s) | 838 |
| Alw26I | GTCTC | 1 cut(s) | 475 |
| Alw44I | GTGCAC | 1 cut(s) | 834 |
| AlwI | GGATC | 4 cut(s) | 228, 353, 684, 1013 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 26 |
| Aor13HI | TCCGGA | 2 cut(s) | 135, 342 |
| AoxI | GGCC | 2 cut(s) | 3, 181 |
| ApaLI | GTGCAC | 1 cut(s) | 834 |
| ApeKI | GCWGC | 1 cut(s) | 623 |
| ApoI | RAATTY | 2 cut(s) | 413, 983 |
| AspLEI | GCGC | 2 cut(s) | 129, 898 |
| AspS9I | GGNCC | 2 cut(s) | 245, 880 |
| AsuC2I | CCSGG | 2 cut(s) | 306, 362 |
| AsuHPI | GGTGA | 3 cut(s) | 385, 832, 948 |
| AvaII | GGWCC | 2 cut(s) | 245, 880 |
| BaeGI | GKGCMC | 1 cut(s) | 838 |
| BalI | TGGCCA | 1 cut(s) | 183 |
| BanI | GGYRCC | 1 cut(s) | 788 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 937, 969 |
| BbrPI | CACGTG | 1 cut(s) | 179 |
| Bbv12I | GWGCWC | 1 cut(s) | 838 |
| BbvI | GCAGC | 1 cut(s) | 635 |
| BccI | CCATC | 5 cut(s) | 149, 284, 313, 613, 992 |
| BceAI | ACGGC | 1 cut(s) | 111 |
| BciT130I | CCWGG | 4 cut(s) | 47, 173, 250, 525 |
| BcnI | CCSGG | 2 cut(s) | 306, 362 |
| BcoDI | GTCTC | 1 cut(s) | 475 |
| BfaI | CTAG | 1 cut(s) | 1023 |
| BfmI | CTRYAG | 1 cut(s) | 641 |
| BfoI | RGCGCY | 1 cut(s) | 130 |
| BfuAI | ACCTGC | 1 cut(s) | 889 |
| BglII | AGATCT | 1 cut(s) | 480 |
| BisI | GCNGC | 1 cut(s) | 624 |
| BlsI | GCNGC | 1 cut(s) | 625 |
| Bme1390I | CCNGG | 6 cut(s) | 47, 173, 250, 306, 362, 525 |
| Bme18I | GGWCC | 2 cut(s) | 245, 880 |
| BmgT120I | GGNCC | 2 cut(s) | 245, 880 |
| BmiI | GGNNCC | 4 cut(s) | 247, 303, 790, 882 |
| BmrFI | CCNGG | 6 cut(s) | 47, 173, 250, 306, 362, 525 |
| BmrI | ACTGGG | 1 cut(s) | 622 |
| BmsI | GCATC | 3 cut(s) | 7, 275, 407 |
| BmuI | ACTGGG | 1 cut(s) | 622 |
| BpmI | CTGGAG | 2 cut(s) | 107, 469 |
| BpuMI | CCSGG | 2 cut(s) | 306, 362 |
| BsaAI | YACGTR | 1 cut(s) | 179 |
| BsaHI | GRCGYC | 1 cut(s) | 41 |
| BsaJI | CCNNGG | 5 cut(s) | 45, 248, 360, 402, 792 |
| BsaWI | WCCGGW | 2 cut(s) | 135, 342 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 52, 367, 643, 916 |
| Bse1I | ACTGG | 4 cut(s) | 30, 454, 628, 882 |
| BseAI | TCCGGA | 2 cut(s) | 135, 342 |
| BseBI | CCWGG | 4 cut(s) | 47, 173, 250, 525 |
| BseDI | CCNNGG | 5 cut(s) | 45, 248, 360, 402, 792 |
| BseGI | GGATG | 5 cut(s) | 70, 398, 624, 652, 802 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 52, 367, 643, 916 |
| BseMII | CTCAG | 2 cut(s) | 226, 843 |
| BseNI | ACTGG | 4 cut(s) | 30, 454, 628, 882 |
| BseRI | GAGGAG | 1 cut(s) | 551 |
| BseSI | GKGCMC | 1 cut(s) | 838 |
| BseXI | GCAGC | 1 cut(s) | 635 |
| BseYI | CCCAGC | 1 cut(s) | 56 |
| Bsh1236I | CGCG | 1 cut(s) | 468 |
| BshFI | GGCC | 2 cut(s) | 5, 183 |
| BshNI | GGYRCC | 1 cut(s) | 788 |
| BsiHKAI | GWGCWC | 1 cut(s) | 838 |
| BsiSI | CCGG | 4 cut(s) | 136, 306, 343, 362 |
| BslFI | GGGAC | 3 cut(s) | 28, 739, 866 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 52, 367, 643, 916 |
| BsmAI | GTCTC | 1 cut(s) | 475 |
| BsmBI | CGTCTC | 1 cut(s) | 475 |
| BsmFI | GGGAC | 3 cut(s) | 28, 739, 866 |
| BsnI | GGCC | 2 cut(s) | 5, 183 |
| Bsp1286I | GDGCHC | 1 cut(s) | 838 |
| Bsp13I | TCCGGA | 2 cut(s) | 135, 342 |
| Bsp143I | GATC | 6 cut(s) | 208, 220, 345, 480, 676, 1018 |
| BspACI | CCGC | 1 cut(s) | 811 |
| BspANI | GGCC | 2 cut(s) | 5, 183 |
| BspCNI | CTCAG | 2 cut(s) | 225, 844 |
| BspEI | TCCGGA | 2 cut(s) | 135, 342 |
| BspFNI | CGCG | 1 cut(s) | 468 |
| BspHI | TCATGA | 1 cut(s) | 598 |
| BspLI | GGNNCC | 4 cut(s) | 247, 303, 790, 882 |
| BspMI | ACCTGC | 1 cut(s) | 889 |
| BspPI | GGATC | 4 cut(s) | 228, 353, 684, 1013 |
| BspT107I | GGYRCC | 1 cut(s) | 788 |
| BsrI | ACTGG | 4 cut(s) | 30, 454, 628, 882 |
| BssECI | CCNNGG | 5 cut(s) | 45, 248, 360, 402, 792 |
| BssMI | GATC | 6 cut(s) | 208, 220, 345, 480, 676, 1018 |
| BssNI | GRCGYC | 1 cut(s) | 41 |
| BssT1I | CCWWGG | 1 cut(s) | 792 |
| Bst2UI | CCWGG | 4 cut(s) | 47, 173, 250, 525 |
| Bst6I | CTCTTC | 2 cut(s) | 13, 335 |
| BstACI | GRCGYC | 1 cut(s) | 41 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 26 |
| BstBAI | YACGTR | 1 cut(s) | 179 |
| BstC8I | GCNNGC | 2 cut(s) | 775, 1028 |
| BstDEI | CTNAG | 2 cut(s) | 212, 852 |
| BstDSI | CCRYGG | 1 cut(s) | 402 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 641 |
| BstF5I | GGATG | 5 cut(s) | 70, 398, 624, 652, 802 |
| BstFNI | CGCG | 1 cut(s) | 468 |
| BstH2I | RGCGCY | 1 cut(s) | 130 |
| BstHHI | GCGC | 2 cut(s) | 129, 898 |
| BstKTI | GATC | 6 cut(s) | 211, 223, 348, 483, 679, 1021 |
| BstMAI | GTCTC | 1 cut(s) | 475 |
| BstMBI | GATC | 6 cut(s) | 208, 220, 345, 480, 676, 1018 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 26, 35, 308, 404 |
| BstNI | CCWGG | 4 cut(s) | 47, 173, 250, 525 |
| BstNSI | RCATGY | 3 cut(s) | 615, 715, 1030 |
| BstSCI | CCNGG | 6 cut(s) | 45, 171, 248, 304, 360, 523 |
| BstSFI | CTRYAG | 1 cut(s) | 641 |
| BstSLI | GKGCMC | 1 cut(s) | 838 |
| BstUI | CGCG | 1 cut(s) | 468 |
| BstV1I | GCAGC | 1 cut(s) | 635 |
| BstX2I | RGATCY | 3 cut(s) | 480, 676, 1018 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 179 |
| BstYI | RGATCY | 3 cut(s) | 480, 676, 1018 |
| BsuRI | GGCC | 2 cut(s) | 5, 183 |
| BtgI | CCRYGG | 1 cut(s) | 402 |
| BtsCI | GGATG | 5 cut(s) | 70, 398, 624, 652, 802 |
| BtsI | GCAGTG | 1 cut(s) | 27 |
| BtsIMutI | CAGTG | 2 cut(s) | 27, 875 |
| BveI | ACCTGC | 1 cut(s) | 889 |
| Cac8I | GCNNGC | 2 cut(s) | 775, 1028 |
| CaiI | CAGNNNCTG | 1 cut(s) | 26 |
| CciI | TCATGA | 1 cut(s) | 598 |
| CfoI | GCGC | 2 cut(s) | 129, 898 |
| Cfr13I | GGNCC | 2 cut(s) | 245, 880 |
| CseI | GACGC | 1 cut(s) | 457 |
| Csp6I | GTAC | 2 cut(s) | 253, 609 |
| CviAII | CATG | 6 cut(s) | 476, 599, 612, 712, 926, 1027 |
| CviQI | GTAC | 2 cut(s) | 253, 609 |
| DdeI | CTNAG | 2 cut(s) | 212, 852 |
| DpnI | GATC | 6 cut(s) | 210, 222, 347, 482, 678, 1020 |
| DpnII | GATC | 6 cut(s) | 208, 220, 345, 480, 676, 1018 |
| EaeI | YGGCCR | 1 cut(s) | 181 |
| Eam1104I | CTCTTC | 2 cut(s) | 13, 335 |
| EarI | CTCTTC | 2 cut(s) | 13, 335 |
| Eco130I | CCWWGG | 1 cut(s) | 792 |
| Eco32I | GATATC | 1 cut(s) | 543 |
| Eco47I | GGWCC | 2 cut(s) | 245, 880 |
| Eco72I | CACGTG | 1 cut(s) | 179 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 641 |
| EcoO109I | RGGNCCY | 1 cut(s) | 245 |
| EcoRII | CCWGG | 4 cut(s) | 45, 171, 248, 523 |
| EcoRV | GATATC | 1 cut(s) | 543 |
| EcoT14I | CCWWGG | 1 cut(s) | 792 |
| ErhI | CCWWGG | 1 cut(s) | 792 |
| Esp3I | CGTCTC | 1 cut(s) | 475 |
| FaeI | CATG | 6 cut(s) | 479, 602, 615, 715, 929, 1030 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 422, 454 |
| FaqI | GGGAC | 3 cut(s) | 28, 739, 866 |
| FatI | CATG | 6 cut(s) | 475, 598, 611, 711, 925, 1026 |
| FblI | GTMKAC | 1 cut(s) | 946 |
| Fnu4HI | GCNGC | 1 cut(s) | 624 |
| FokI | GGATG | 5 cut(s) | 77, 385, 631, 659, 809 |
| Fsp4HI | GCNGC | 1 cut(s) | 624 |
| FspBI | CTAG | 1 cut(s) | 1023 |
| GlaI | GCGC | 2 cut(s) | 128, 897 |
| GluI | GCNGC | 1 cut(s) | 624 |
| GsaI | CCCAGC | 1 cut(s) | 60 |
| GsuI | CTGGAG | 2 cut(s) | 107, 469 |
| HaeII | RGCGCY | 1 cut(s) | 130 |
| HaeIII | GGCC | 2 cut(s) | 5, 183 |
| HapII | CCGG | 4 cut(s) | 136, 306, 343, 362 |
| HgaI | GACGC | 1 cut(s) | 457 |
| HhaI | GCGC | 2 cut(s) | 129, 898 |
| Hin1I | GRCGYC | 1 cut(s) | 41 |
| Hin1II | CATG | 6 cut(s) | 479, 602, 615, 715, 929, 1030 |
| Hin6I | GCGC | 2 cut(s) | 127, 896 |
| HinP1I | GCGC | 2 cut(s) | 127, 896 |
| HinfI | GANTC | 5 cut(s) | 323, 570, 823, 920, 929 |
| HpaII | CCGG | 4 cut(s) | 136, 306, 343, 362 |
| HphI | GGTGA | 3 cut(s) | 385, 832, 948 |
| Hpy166II | GTNNAC | 3 cut(s) | 73, 836, 947 |
| Hpy188III | TCNNGA | 7 cut(s) | 136, 152, 214, 343, 419, 486, 599 |
| Hpy8I | GTNNAC | 3 cut(s) | 73, 836, 947 |
| Hpy99I | CGWCG | 1 cut(s) | 43 |
| HpyAV | CCTTC | 4 cut(s) | 605, 910, 960, 1006 |
| HpyCH4IV | ACGT | 4 cut(s) | 41, 178, 393, 859 |
| HpyCH4V | TGCA | 5 cut(s) | 20, 266, 704, 836, 875 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 26, 35, 308, 404 |
| HpyF3I | CTNAG | 2 cut(s) | 212, 852 |
| HpySE526I | ACGT | 4 cut(s) | 41, 178, 393, 859 |
| Hsp92I | GRCGYC | 1 cut(s) | 41 |
| Hsp92II | CATG | 6 cut(s) | 479, 602, 615, 715, 929, 1030 |
| HspAI | GCGC | 2 cut(s) | 127, 896 |
| Kpn2I | TCCGGA | 2 cut(s) | 135, 342 |
| Kzo9I | GATC | 6 cut(s) | 208, 220, 345, 480, 676, 1018 |
| LmnI | GCTCC | 3 cut(s) | 115, 307, 526 |
| Lsp1109I | GCAGC | 1 cut(s) | 635 |
| LweI | GCATC | 3 cut(s) | 7, 275, 407 |
| MaeI | CTAG | 1 cut(s) | 1023 |
| MaeII | ACGT | 4 cut(s) | 41, 178, 393, 859 |
| MaeIII | GTNAC | 3 cut(s) | 22, 799, 921 |
| MalI | GATC | 6 cut(s) | 210, 222, 347, 482, 678, 1020 |
| MboI | GATC | 6 cut(s) | 208, 220, 345, 480, 676, 1018 |
| MboII | GAAGA | 5 cut(s) | 322, 328, 487, 818, 945 |
| MflI | RGATCY | 3 cut(s) | 480, 676, 1018 |
| MhlI | GDGCHC | 1 cut(s) | 838 |
| MlsI | TGGCCA | 1 cut(s) | 183 |
| MluCI | AATT | 4 cut(s) | 413, 456, 983, 1002 |
| MluNI | TGGCCA | 1 cut(s) | 183 |
| MlyI | GAGTC | 3 cut(s) | 317, 579, 929 |
| MmeI | TCCRAC | 2 cut(s) | 348, 596 |
| Mox20I | TGGCCA | 1 cut(s) | 183 |
| MroI | TCCGGA | 2 cut(s) | 135, 342 |
| MscI | TGGCCA | 1 cut(s) | 183 |
| MseI | TTAA | 3 cut(s) | 258, 590, 935 |
| MslI | CAYNNNNRTG | 1 cut(s) | 603 |
| Msp20I | TGGCCA | 1 cut(s) | 183 |
| MspA1I | CMGCKG | 1 cut(s) | 811 |
| MspI | CCGG | 4 cut(s) | 136, 306, 343, 362 |
| MspR9I | CCNGG | 6 cut(s) | 47, 173, 250, 306, 362, 525 |
| MvaI | CCWGG | 4 cut(s) | 47, 173, 250, 525 |
| MvnI | CGCG | 1 cut(s) | 468 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 26, 35, 308, 404 |
| NciI | CCSGG | 2 cut(s) | 306, 362 |
| NdeII | GATC | 6 cut(s) | 208, 220, 345, 480, 676, 1018 |
| NlaIII | CATG | 6 cut(s) | 479, 602, 615, 715, 929, 1030 |
| NlaIV | GGNNCC | 4 cut(s) | 247, 303, 790, 882 |
| NmuCI | GTSAC | 3 cut(s) | 22, 799, 921 |
| NspI | RCATGY | 3 cut(s) | 615, 715, 1030 |
| PaeI | GCATGC | 1 cut(s) | 1030 |
| PagI | TCATGA | 1 cut(s) | 598 |
| PciI | ACATGT | 1 cut(s) | 611 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 399 |
| PfeI | GAWTC | 2 cut(s) | 823, 929 |
| PkrI | GCNGC | 1 cut(s) | 625 |
| PleI | GAGTC | 3 cut(s) | 317, 578, 928 |
| PmaCI | CACGTG | 1 cut(s) | 179 |
| PmlI | CACGTG | 1 cut(s) | 179 |
| PpsI | GAGTC | 3 cut(s) | 317, 578, 928 |
| Ppu21I | YACGTR | 1 cut(s) | 179 |
| PpuMI | RGGWCCY | 1 cut(s) | 245 |
| PscI | ACATGT | 1 cut(s) | 611 |
| Psp5II | RGGWCCY | 1 cut(s) | 245 |
| Psp6I | CCWGG | 4 cut(s) | 45, 171, 248, 523 |
| PspCI | CACGTG | 1 cut(s) | 179 |
| PspFI | CCCAGC | 1 cut(s) | 56 |
| PspGI | CCWGG | 4 cut(s) | 45, 171, 248, 523 |
| PspN4I | GGNNCC | 4 cut(s) | 247, 303, 790, 882 |
| PspPI | GGNCC | 2 cut(s) | 245, 880 |
| PspPPI | RGGWCCY | 1 cut(s) | 245 |
| PstNI | CAGNNNCTG | 1 cut(s) | 26 |
| PsuI | RGATCY | 3 cut(s) | 480, 676, 1018 |
| RsaI | GTAC | 2 cut(s) | 254, 610 |
| RsaNI | GTAC | 2 cut(s) | 253, 609 |
| RseI | CAYNNNNRTG | 1 cut(s) | 603 |
| SaqAI | TTAA | 3 cut(s) | 258, 590, 935 |
| SatI | GCNGC | 1 cut(s) | 624 |
| Sau3AI | GATC | 6 cut(s) | 208, 220, 345, 480, 676, 1018 |
| Sau96I | GGNCC | 2 cut(s) | 245, 880 |
| SchI | GAGTC | 3 cut(s) | 317, 579, 929 |
| ScrFI | CCNGG | 6 cut(s) | 47, 173, 250, 306, 362, 525 |
| SduI | GDGCHC | 1 cut(s) | 838 |
| SfaNI | GCATC | 3 cut(s) | 7, 275, 407 |
| SfcI | CTRYAG | 1 cut(s) | 641 |
| SinI | GGWCC | 2 cut(s) | 245, 880 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 603 |
| SphI | GCATGC | 1 cut(s) | 1030 |
| Sse9I | AATT | 4 cut(s) | 413, 456, 983, 1002 |
| SsiI | CCGC | 1 cut(s) | 811 |
| SspMI | CTAG | 1 cut(s) | 1023 |
| StyD4I | CCNGG | 6 cut(s) | 45, 171, 248, 304, 360, 523 |
| StyI | CCWWGG | 1 cut(s) | 792 |
| TaiI | ACGT | 4 cut(s) | 44, 181, 396, 862 |
| TaqI | TCGA | 1 cut(s) | 223 |
| TasI | AATT | 4 cut(s) | 413, 456, 983, 1002 |
| TfiI | GAWTC | 2 cut(s) | 823, 929 |
| Tru1I | TTAA | 3 cut(s) | 258, 590, 935 |
| Tru9I | TTAA | 3 cut(s) | 258, 590, 935 |
| TscAI | CASTG | 2 cut(s) | 27, 882 |
| TseFI | GTSAC | 3 cut(s) | 22, 799, 921 |
| TseI | GCWGC | 1 cut(s) | 623 |
| Tsp45I | GTSAC | 3 cut(s) | 22, 799, 921 |
| TspDTI | ATGAA | 4 cut(s) | 587, 671, 818, 942 |
| TspGWI | ACGGA | 1 cut(s) | 391 |
| TspRI | CASTG | 2 cut(s) | 27, 882 |
| VneI | GTGCAC | 1 cut(s) | 834 |
| VpaK11BI | GGWCC | 2 cut(s) | 245, 880 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 641 |
| XapI | RAATTY | 2 cut(s) | 413, 983 |
| XceI | RCATGY | 3 cut(s) | 615, 715, 1030 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 391 |
| XmiI | GTMKAC | 1 cut(s) | 946 |
| XspI | CTAG | 1 cut(s) | 1023 |
| ZraI | GACGTC | 1 cut(s) | 42 |