Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 630 |
| AciI | CCGC | 3 cut(s) | 119, 125, 179 |
| AclWI | GGATC | 3 cut(s) | 116, 129, 334 |
| AcsI | RAATTY | 2 cut(s) | 379, 546 |
| AcuI | CTGAAG | 3 cut(s) | 53, 492, 683 |
| AcyI | GRCGYC | 1 cut(s) | 627 |
| AfaI | GTAC | 3 cut(s) | 74, 93, 328 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 280, 442 |
| AgsI | TTSAA | 1 cut(s) | 538 |
| AjnI | CCWGG | 1 cut(s) | 343 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 300, 332, 423, 455 |
| AluBI | AGCT | 1 cut(s) | 256 |
| AluI | AGCT | 1 cut(s) | 256 |
| Alw21I | GWGCWC | 1 cut(s) | 606 |
| Alw26I | GTCTC | 1 cut(s) | 524 |
| AlwI | GGATC | 3 cut(s) | 116, 129, 334 |
| AoxI | GGCC | 2 cut(s) | 271, 658 |
| ApeKI | GCWGC | 2 cut(s) | 97, 457 |
| ApoI | RAATTY | 2 cut(s) | 379, 546 |
| AspS9I | GGNCC | 2 cut(s) | 65, 492 |
| AsuHPI | GGTGA | 1 cut(s) | 13 |
| AvaII | GGWCC | 2 cut(s) | 65, 492 |
| BamHI | GGATCC | 1 cut(s) | 121 |
| Bbv12I | GWGCWC | 1 cut(s) | 606 |
| BbvI | GCAGC | 2 cut(s) | 84, 469 |
| BccI | CCATC | 2 cut(s) | 104, 585 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 98, 132 |
| BciT130I | CCWGG | 1 cut(s) | 345 |
| BciVI | GTATCC | 1 cut(s) | 145 |
| BclI | TGATCA | 2 cut(s) | 247, 262 |
| BcoDI | GTCTC | 1 cut(s) | 524 |
| BfaI | CTAG | 5 cut(s) | 128, 188, 500, 515, 682 |
| BfuI | GTATCC | 1 cut(s) | 145 |
| BisI | GCNGC | 2 cut(s) | 98, 458 |
| BlsI | GCNGC | 2 cut(s) | 99, 459 |
| Bme1390I | CCNGG | 1 cut(s) | 345 |
| Bme18I | GGWCC | 2 cut(s) | 65, 492 |
| BmgT120I | GGNCC | 2 cut(s) | 65, 492 |
| BmiI | GGNNCC | 3 cut(s) | 123, 493, 556 |
| BmrFI | CCNGG | 1 cut(s) | 345 |
| BmrI | ACTGGG | 1 cut(s) | 551 |
| BmsI | GCATC | 2 cut(s) | 244, 512 |
| BmuI | ACTGGG | 1 cut(s) | 551 |
| BsaBI | GATNNNNATC | 2 cut(s) | 246, 405 |
| BsaHI | GRCGYC | 1 cut(s) | 627 |
| BsaI | GGTCTC | 1 cut(s) | 524 |
| BsaJI | CCNNGG | 3 cut(s) | 68, 343, 558 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 280, 442 |
| Bse1I | ACTGG | 1 cut(s) | 546 |
| Bse8I | GATNNNNATC | 2 cut(s) | 246, 405 |
| BseBI | CCWGG | 1 cut(s) | 345 |
| BseDI | CCNNGG | 3 cut(s) | 68, 343, 558 |
| BseJI | GATNNNNATC | 2 cut(s) | 246, 405 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 280, 442 |
| BseNI | ACTGG | 1 cut(s) | 546 |
| BseXI | GCAGC | 2 cut(s) | 84, 469 |
| BseYI | CCCAGC | 1 cut(s) | 4 |
| BsgI | GTGCAG | 1 cut(s) | 415 |
| BshFI | GGCC | 2 cut(s) | 273, 660 |
| BsiHKAI | GWGCWC | 1 cut(s) | 606 |
| BslFI | GGGAC | 1 cut(s) | 505 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 280, 442 |
| BsmAI | GTCTC | 1 cut(s) | 524 |
| BsmFI | GGGAC | 1 cut(s) | 505 |
| BsmI | GAATGC | 1 cut(s) | 437 |
| BsnI | GGCC | 2 cut(s) | 273, 660 |
| Bso31I | GGTCTC | 1 cut(s) | 524 |
| Bsp1286I | GDGCHC | 1 cut(s) | 606 |
| Bsp143I | GATC | 6 cut(s) | 40, 83, 121, 247, 262, 339 |
| Bsp19I | CCATGG | 2 cut(s) | 68, 558 |
| BspACI | CCGC | 3 cut(s) | 119, 125, 179 |
| BspANI | GGCC | 2 cut(s) | 273, 660 |
| BspHI | TCATGA | 1 cut(s) | 418 |
| BspLI | GGNNCC | 3 cut(s) | 123, 493, 556 |
| BspPI | GGATC | 3 cut(s) | 116, 129, 334 |
| BspTNI | GGTCTC | 1 cut(s) | 524 |
| BsrI | ACTGG | 1 cut(s) | 546 |
| BssECI | CCNNGG | 3 cut(s) | 68, 343, 558 |
| BssMI | GATC | 6 cut(s) | 40, 83, 121, 247, 262, 339 |
| BssNI | GRCGYC | 1 cut(s) | 627 |
| BssT1I | CCWWGG | 2 cut(s) | 68, 558 |
| Bst2UI | CCWGG | 1 cut(s) | 345 |
| Bst6I | CTCTTC | 3 cut(s) | 29, 155, 659 |
| BstACI | GRCGYC | 1 cut(s) | 627 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 482 |
| BstC8I | GCNNGC | 4 cut(s) | 117, 183, 229, 233 |
| BstDSI | CCRYGG | 2 cut(s) | 68, 558 |
| BstKTI | GATC | 6 cut(s) | 43, 86, 124, 250, 265, 342 |
| BstMAI | GTCTC | 1 cut(s) | 524 |
| BstMBI | GATC | 6 cut(s) | 40, 83, 121, 247, 262, 339 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 224, 482, 610 |
| BstNI | CCWGG | 1 cut(s) | 345 |
| BstSCI | CCNGG | 1 cut(s) | 343 |
| BstV1I | GCAGC | 2 cut(s) | 84, 469 |
| BstX2I | RGATCY | 1 cut(s) | 121 |
| BstYI | RGATCY | 1 cut(s) | 121 |
| BsuI | GTATCC | 1 cut(s) | 145 |
| BsuRI | GGCC | 2 cut(s) | 273, 660 |
| BtgI | CCRYGG | 2 cut(s) | 68, 558 |
| BtsIMutI | CAGTG | 1 cut(s) | 468 |
| Cac8I | GCNNGC | 4 cut(s) | 117, 183, 229, 233 |
| CciI | TCATGA | 1 cut(s) | 418 |
| Cfr13I | GGNCC | 2 cut(s) | 65, 492 |
| Csp6I | GTAC | 3 cut(s) | 73, 92, 327 |
| CviAII | CATG | 7 cut(s) | 69, 139, 287, 386, 419, 559, 610 |
| CviJI | RGCY | 6 cut(s) | 81, 115, 256, 273, 446, 660 |
| CviKI_1 | RGCY | 6 cut(s) | 81, 115, 256, 273, 446, 660 |
| CviQI | GTAC | 3 cut(s) | 73, 92, 327 |
| DpnI | GATC | 6 cut(s) | 42, 85, 123, 249, 264, 341 |
| DpnII | GATC | 6 cut(s) | 40, 83, 121, 247, 262, 339 |
| Eam1104I | CTCTTC | 3 cut(s) | 29, 155, 659 |
| EarI | CTCTTC | 3 cut(s) | 29, 155, 659 |
| EciI | GGCGGA | 1 cut(s) | 168 |
| Eco130I | CCWWGG | 2 cut(s) | 68, 558 |
| Eco147I | AGGCCT | 2 cut(s) | 273, 660 |
| Eco31I | GGTCTC | 1 cut(s) | 524 |
| Eco47I | GGWCC | 2 cut(s) | 65, 492 |
| Eco57I | CTGAAG | 3 cut(s) | 53, 492, 683 |
| EcoO109I | RGGNCCY | 1 cut(s) | 492 |
| EcoRII | CCWGG | 1 cut(s) | 343 |
| EcoT14I | CCWWGG | 2 cut(s) | 68, 558 |
| ErhI | CCWWGG | 2 cut(s) | 68, 558 |
| FaeI | CATG | 7 cut(s) | 72, 142, 290, 389, 422, 562, 613 |
| FaqI | GGGAC | 1 cut(s) | 505 |
| FatI | CATG | 7 cut(s) | 68, 138, 286, 385, 418, 558, 609 |
| FbaI | TGATCA | 2 cut(s) | 247, 262 |
| Fnu4HI | GCNGC | 2 cut(s) | 98, 458 |
| Fsp4HI | GCNGC | 2 cut(s) | 98, 458 |
| FspBI | CTAG | 5 cut(s) | 128, 188, 500, 515, 682 |
| GluI | GCNGC | 2 cut(s) | 98, 458 |
| GsaI | CCCAGC | 1 cut(s) | 8 |
| HaeIII | GGCC | 2 cut(s) | 273, 660 |
| Hin1I | GRCGYC | 1 cut(s) | 627 |
| Hin1II | CATG | 7 cut(s) | 72, 142, 290, 389, 422, 562, 613 |
| HinfI | GANTC | 1 cut(s) | 142 |
| HphI | GGTGA | 1 cut(s) | 13 |
| Hpy188I | TCNGA | 2 cut(s) | 252, 411 |
| Hpy188III | TCNNGA | 2 cut(s) | 239, 419 |
| Hpy99I | CGWCG | 1 cut(s) | 629 |
| HpyAV | CCTTC | 1 cut(s) | 322 |
| HpyCH4IV | ACGT | 1 cut(s) | 627 |
| HpyCH4V | TGCA | 6 cut(s) | 100, 227, 385, 396, 485, 613 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 224, 482, 610 |
| HpySE526I | ACGT | 1 cut(s) | 627 |
| Hsp92I | GRCGYC | 1 cut(s) | 627 |
| Hsp92II | CATG | 7 cut(s) | 72, 142, 290, 389, 422, 562, 613 |
| Ksp22I | TGATCA | 2 cut(s) | 247, 262 |
| Kzo9I | GATC | 6 cut(s) | 40, 83, 121, 247, 262, 339 |
| LmnI | GCTCC | 1 cut(s) | 609 |
| Lsp1109I | GCAGC | 2 cut(s) | 84, 469 |
| LweI | GCATC | 2 cut(s) | 244, 512 |
| MaeI | CTAG | 5 cut(s) | 128, 188, 500, 515, 682 |
| MaeII | ACGT | 1 cut(s) | 627 |
| MaeIII | GTNAC | 1 cut(s) | 464 |
| MalI | GATC | 6 cut(s) | 42, 85, 123, 249, 264, 341 |
| MboI | GATC | 6 cut(s) | 40, 83, 121, 247, 262, 339 |
| MboII | GAAGA | 5 cut(s) | 46, 142, 145, 661, 676 |
| MfeI | CAATTG | 1 cut(s) | 486 |
| MflI | RGATCY | 1 cut(s) | 121 |
| MhlI | GDGCHC | 1 cut(s) | 606 |
| MluCI | AATT | 4 cut(s) | 379, 486, 546, 632 |
| MnlI | CCTC | 6 cut(s) | 56, 124, 447, 505, 632, 660 |
| MseI | TTAA | 1 cut(s) | 27 |
| MspR9I | CCNGG | 1 cut(s) | 345 |
| MunI | CAATTG | 1 cut(s) | 486 |
| Mva1269I | GAATGC | 1 cut(s) | 437 |
| MvaI | CCWGG | 1 cut(s) | 345 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 224, 482, 610 |
| NcoI | CCATGG | 2 cut(s) | 68, 558 |
| NdeII | GATC | 6 cut(s) | 40, 83, 121, 247, 262, 339 |
| NlaIII | CATG | 7 cut(s) | 72, 142, 290, 389, 422, 562, 613 |
| NlaIV | GGNNCC | 3 cut(s) | 123, 493, 556 |
| PagI | TCATGA | 1 cut(s) | 418 |
| PceI | AGGCCT | 2 cut(s) | 273, 660 |
| PctI | GAATGC | 1 cut(s) | 437 |
| PfeI | GAWTC | 1 cut(s) | 142 |
| PkrI | GCNGC | 2 cut(s) | 99, 459 |
| PpuMI | RGGWCCY | 1 cut(s) | 492 |
| Psp5II | RGGWCCY | 1 cut(s) | 492 |
| Psp6I | CCWGG | 1 cut(s) | 343 |
| PspFI | CCCAGC | 1 cut(s) | 4 |
| PspGI | CCWGG | 1 cut(s) | 343 |
| PspN4I | GGNNCC | 3 cut(s) | 123, 493, 556 |
| PspPI | GGNCC | 2 cut(s) | 65, 492 |
| PspPPI | RGGWCCY | 1 cut(s) | 492 |
| PsuI | RGATCY | 1 cut(s) | 121 |
| RsaI | GTAC | 3 cut(s) | 74, 93, 328 |
| RsaNI | GTAC | 3 cut(s) | 73, 92, 327 |
| SaqAI | TTAA | 1 cut(s) | 27 |
| SatI | GCNGC | 2 cut(s) | 98, 458 |
| Sau3AI | GATC | 6 cut(s) | 40, 83, 121, 247, 262, 339 |
| Sau96I | GGNCC | 2 cut(s) | 65, 492 |
| ScrFI | CCNGG | 1 cut(s) | 345 |
| SduI | GDGCHC | 1 cut(s) | 606 |
| SfaNI | GCATC | 2 cut(s) | 244, 512 |
| SinI | GGWCC | 2 cut(s) | 65, 492 |
| Sse9I | AATT | 4 cut(s) | 379, 486, 546, 632 |
| SseBI | AGGCCT | 2 cut(s) | 273, 660 |
| SsiI | CCGC | 3 cut(s) | 119, 125, 179 |
| SspI | AATATT | 1 cut(s) | 675 |
| SspMI | CTAG | 5 cut(s) | 128, 188, 500, 515, 682 |
| StuI | AGGCCT | 2 cut(s) | 273, 660 |
| StyD4I | CCNGG | 1 cut(s) | 343 |
| StyI | CCWWGG | 2 cut(s) | 68, 558 |
| TaiI | ACGT | 1 cut(s) | 630 |
| TaqI | TCGA | 3 cut(s) | 221, 588, 624 |
| TasI | AATT | 4 cut(s) | 379, 486, 546, 632 |
| TatI | WGTACW | 1 cut(s) | 91 |
| TfiI | GAWTC | 1 cut(s) | 142 |
| Tru1I | TTAA | 1 cut(s) | 27 |
| Tru9I | TTAA | 1 cut(s) | 27 |
| TscAI | CASTG | 1 cut(s) | 475 |
| TseI | GCWGC | 2 cut(s) | 97, 457 |
| TspDTI | ATGAA | 7 cut(s) | 155, 224, 275, 407, 435, 444, 662 |
| TspRI | CASTG | 1 cut(s) | 475 |
| VpaK11BI | GGWCC | 2 cut(s) | 65, 492 |
| XapI | RAATTY | 2 cut(s) | 379, 546 |
| XspI | CTAG | 5 cut(s) | 128, 188, 500, 515, 682 |
| ZraI | GACGTC | 1 cut(s) | 628 |