ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 141 |
| Acc16I | TGCGCA | 1 cut(s) | 839 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 511 |
| AccI | GTMKAC | 1 cut(s) | 51 |
| AccII | CGCG | 2 cut(s) | 30, 66 |
| AccIII | TCCGGA | 2 cut(s) | 422, 628 |
| AclWI | GGATC | 5 cut(s) | 184, 357, 414, 684, 735 |
| AcoI | YGGCCR | 1 cut(s) | 594 |
| AcuI | CTGAAG | 1 cut(s) | 788 |
| AcyI | GRCGYC | 1 cut(s) | 138 |
| AfaI | GTAC | 3 cut(s) | 449, 620, 755 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 46, 133, 396, 397, 435, 511, 584, 635 |
| AflIII | ACRYGT | 1 cut(s) | 621 |
| AgeI | ACCGGT | 1 cut(s) | 119 |
| AgsI | TTSAA | 2 cut(s) | 46, 797 |
| AjnI | CCWGG | 1 cut(s) | 510 |
| AluBI | AGCT | 3 cut(s) | 688, 766, 863 |
| AluI | AGCT | 3 cut(s) | 688, 766, 863 |
| Alw26I | GTCTC | 2 cut(s) | 328, 730 |
| AlwI | GGATC | 5 cut(s) | 184, 357, 414, 684, 735 |
| Aor13HI | TCCGGA | 2 cut(s) | 422, 628 |
| AoxI | GGCC | 4 cut(s) | 353, 384, 594, 662 |
| AsiGI | ACCGGT | 1 cut(s) | 119 |
| AspLEI | GCGC | 1 cut(s) | 840 |
| AspS9I | GGNCC | 4 cut(s) | 94, 354, 384, 400 |
| AsuC2I | CCSGG | 3 cut(s) | 347, 464, 543 |
| AsuHPI | GGTGA | 3 cut(s) | 109, 141, 280 |
| AvaII | GGWCC | 2 cut(s) | 94, 400 |
| AxyI | CCTNAGG | 1 cut(s) | 849 |
| BauI | CACGAG | 1 cut(s) | 379 |
| BbvCI | CCTCAGC | 1 cut(s) | 659 |
| BccI | CCATC | 2 cut(s) | 53, 224 |
| BceAI | ACGGC | 5 cut(s) | 146, 250, 305, 581, 652 |
| BciT130I | CCWGG | 1 cut(s) | 512 |
| BclI | TGATCA | 1 cut(s) | 873 |
| BcnI | CCSGG | 3 cut(s) | 347, 464, 543 |
| BcoDI | GTCTC | 2 cut(s) | 328, 730 |
| BisI | GCNGC | 5 cut(s) | 238, 300, 387, 487, 665 |
| BlsI | GCNGC | 5 cut(s) | 239, 301, 388, 488, 666 |
| Bme1390I | CCNGG | 4 cut(s) | 347, 464, 512, 543 |
| Bme18I | GGWCC | 2 cut(s) | 94, 400 |
| BmgT120I | GGNCC | 4 cut(s) | 94, 354, 384, 400 |
| BmiI | GGNNCC | 5 cut(s) | 96, 401, 427, 493, 889 |
| BmrFI | CCNGG | 4 cut(s) | 347, 464, 512, 543 |
| BmsI | GCATC | 2 cut(s) | 583, 683 |
| Bpu10I | CCTNAGC | 3 cut(s) | 295, 659, 864 |
| BpuMI | CCSGG | 3 cut(s) | 347, 464, 543 |
| BsaHI | GRCGYC | 1 cut(s) | 138 |
| BsaJI | CCNNGG | 4 cut(s) | 132, 232, 434, 597 |
| BsaWI | WCCGGW | 3 cut(s) | 119, 422, 628 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 275, 305 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 46, 133, 396, 397, 435, 511, 584, 635 |
| Bse118I | RCCGGY | 2 cut(s) | 119, 667 |
| Bse1I | ACTGG | 2 cut(s) | 403, 445 |
| Bse21I | CCTNAGG | 1 cut(s) | 849 |
| Bse3DI | GCAATG | 1 cut(s) | 315 |
| BseAI | TCCGGA | 2 cut(s) | 422, 628 |
| BseBI | CCWGG | 1 cut(s) | 512 |
| BseDI | CCNNGG | 4 cut(s) | 132, 232, 434, 597 |
| BseGI | GGATG | 5 cut(s) | 216, 228, 574, 698, 820 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 46, 133, 396, 397, 435, 511, 584, 635 |
| BseMI | GCAATG | 1 cut(s) | 315 |
| BseMII | CTCAG | 4 cut(s) | 650, 725, 840, 878 |
| BseNI | ACTGG | 2 cut(s) | 403, 445 |
| BseX3I | CGGCCG | 1 cut(s) | 594 |
| BsgI | GTGCAG | 1 cut(s) | 665 |
| Bsh1236I | CGCG | 2 cut(s) | 30, 66 |
| Bsh1285I | CGRYCG | 1 cut(s) | 597 |
| BshFI | GGCC | 4 cut(s) | 355, 386, 596, 664 |
| BshTI | ACCGGT | 1 cut(s) | 119 |
| BsiEI | CGRYCG | 1 cut(s) | 597 |
| BsiSI | CCGG | 7 cut(s) | 120, 347, 423, 463, 543, 629, 668 |
| BslFI | GGGAC | 3 cut(s) | 80, 391, 494 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 46, 133, 396, 397, 435, 511, 584, 635 |
| BsmAI | GTCTC | 2 cut(s) | 328, 730 |
| BsmBI | CGTCTC | 1 cut(s) | 328 |
| BsmFI | GGGAC | 3 cut(s) | 80, 391, 494 |
| BsnI | GGCC | 4 cut(s) | 355, 386, 596, 664 |
| Bsp13I | TCCGGA | 2 cut(s) | 422, 628 |
| Bsp1407I | TGTACA | 1 cut(s) | 618 |
| Bsp143I | GATC | 6 cut(s) | 189, 349, 419, 676, 727, 873 |
| Bsp68I | TCGCGA | 1 cut(s) | 30 |
| BspANI | GGCC | 4 cut(s) | 355, 386, 596, 664 |
| BspCNI | CTCAG | 4 cut(s) | 651, 726, 841, 877 |
| BspEI | TCCGGA | 2 cut(s) | 422, 628 |
| BspFNI | CGCG | 2 cut(s) | 30, 66 |
| BspLI | GGNNCC | 5 cut(s) | 96, 401, 427, 493, 889 |
| BspPI | GGATC | 5 cut(s) | 184, 357, 414, 684, 735 |
| BsrDI | GCAATG | 1 cut(s) | 315 |
| BsrFI | RCCGGY | 2 cut(s) | 119, 667 |
| BsrGI | TGTACA | 1 cut(s) | 618 |
| BsrI | ACTGG | 2 cut(s) | 403, 445 |
| BssAI | RCCGGY | 2 cut(s) | 119, 667 |
| BssECI | CCNNGG | 4 cut(s) | 132, 232, 434, 597 |
| BssMI | GATC | 6 cut(s) | 189, 349, 419, 676, 727, 873 |
| BssNAI | GTATAC | 1 cut(s) | 52 |
| BssNI | GRCGYC | 1 cut(s) | 138 |
| BssSI | CACGAG | 1 cut(s) | 379 |
| BssT1I | CCWWGG | 1 cut(s) | 132 |
| Bst1107I | GTATAC | 1 cut(s) | 52 |
| Bst2BI | CACGAG | 1 cut(s) | 379 |
| Bst2UI | CCWGG | 1 cut(s) | 512 |
| Bst4CI | ACNGT | 1 cut(s) | 758 |
| Bst6I | CTCTTC | 2 cut(s) | 47, 767 |
| BstACI | GRCGYC | 1 cut(s) | 138 |
| BstAUI | TGTACA | 1 cut(s) | 618 |
| BstC8I | GCNNGC | 3 cut(s) | 28, 367, 669 |
| BstDEI | CTNAG | 6 cut(s) | 295, 472, 659, 734, 849, 864 |
| BstDSI | CCRYGG | 3 cut(s) | 232, 434, 597 |
| BstEII | GGTNACC | 1 cut(s) | 537 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 44 |
| BstF5I | GGATG | 5 cut(s) | 216, 228, 574, 698, 820 |
| BstFNI | CGCG | 2 cut(s) | 30, 66 |
| BstHHI | GCGC | 1 cut(s) | 840 |
| BstKTI | GATC | 6 cut(s) | 192, 352, 422, 679, 730, 876 |
| BstMAI | GTCTC | 2 cut(s) | 328, 730 |
| BstMBI | GATC | 6 cut(s) | 189, 349, 419, 676, 727, 873 |
| BstMCI | CGRYCG | 1 cut(s) | 597 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 36, 167, 246, 305, 483, 664 |
| BstNI | CCWGG | 1 cut(s) | 512 |
| BstNSI | RCATGY | 1 cut(s) | 625 |
| BstPI | GGTNACC | 1 cut(s) | 537 |
| BstSCI | CCNGG | 4 cut(s) | 345, 462, 510, 541 |
| BstUI | CGCG | 2 cut(s) | 30, 66 |
| BstX2I | RGATCY | 2 cut(s) | 189, 676 |
| BstYI | RGATCY | 2 cut(s) | 189, 676 |
| BstZ17I | GTATAC | 1 cut(s) | 52 |
| BstZI | CGGCCG | 1 cut(s) | 594 |
| Bsu36I | CCTNAGG | 1 cut(s) | 849 |
| BsuRI | GGCC | 4 cut(s) | 355, 386, 596, 664 |
| BtgI | CCRYGG | 3 cut(s) | 232, 434, 597 |
| BtsCI | GGATG | 5 cut(s) | 216, 228, 574, 698, 820 |
| BtsI | GCAGTG | 1 cut(s) | 755 |
| BtsIMutI | CAGTG | 1 cut(s) | 755 |
| BtuMI | TCGCGA | 1 cut(s) | 30 |
| Cac8I | GCNNGC | 3 cut(s) | 28, 367, 669 |
| CfoI | GCGC | 1 cut(s) | 840 |
| Cfr10I | RCCGGY | 2 cut(s) | 119, 667 |
| Cfr13I | GGNCC | 4 cut(s) | 94, 354, 384, 400 |
| CseI | GACGC | 1 cut(s) | 55 |
| Csp6I | GTAC | 3 cut(s) | 448, 619, 754 |
| CspAI | ACCGGT | 1 cut(s) | 119 |
| CviAII | CATG | 3 cut(s) | 622, 809, 824 |
| CviQI | GTAC | 3 cut(s) | 448, 619, 754 |
| DdeI | CTNAG | 6 cut(s) | 295, 472, 659, 734, 849, 864 |
| DpnI | GATC | 6 cut(s) | 191, 351, 421, 678, 729, 875 |
| DpnII | GATC | 6 cut(s) | 189, 349, 419, 676, 727, 873 |
| EaeI | YGGCCR | 1 cut(s) | 594 |
| EagI | CGGCCG | 1 cut(s) | 594 |
| Eam1104I | CTCTTC | 2 cut(s) | 47, 767 |
| EarI | CTCTTC | 2 cut(s) | 47, 767 |
| EciI | GGCGGA | 1 cut(s) | 504 |
| EclXI | CGGCCG | 1 cut(s) | 594 |
| Eco130I | CCWWGG | 1 cut(s) | 132 |
| Eco47I | GGWCC | 2 cut(s) | 94, 400 |
| Eco52I | CGGCCG | 1 cut(s) | 594 |
| Eco57I | CTGAAG | 1 cut(s) | 788 |
| Eco81I | CCTNAGG | 1 cut(s) | 849 |
| Eco91I | GGTNACC | 1 cut(s) | 537 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 44 |
| EcoO109I | RGGNCCY | 1 cut(s) | 94 |
| EcoO65I | GGTNACC | 1 cut(s) | 537 |
| EcoRII | CCWGG | 1 cut(s) | 510 |
| EcoT14I | CCWWGG | 1 cut(s) | 132 |
| ErhI | CCWWGG | 1 cut(s) | 132 |
| Esp3I | CGTCTC | 1 cut(s) | 328 |
| FaeI | CATG | 3 cut(s) | 625, 812, 827 |
| FaiI | YATR | 6 cut(s) | 52, 359, 569, 623, 810, 825 |
| FaqI | GGGAC | 3 cut(s) | 80, 391, 494 |
| FatI | CATG | 3 cut(s) | 621, 808, 823 |
| FauI | CCCGC | 6 cut(s) | 166, 233, 370, 470, 550, 632 |
| FbaI | TGATCA | 1 cut(s) | 873 |
| FblI | GTMKAC | 1 cut(s) | 51 |
| Fnu4HI | GCNGC | 5 cut(s) | 238, 300, 387, 487, 665 |
| FokI | GGATG | 5 cut(s) | 203, 215, 561, 705, 827 |
| Fsp4HI | GCNGC | 5 cut(s) | 238, 300, 387, 487, 665 |
| FspI | TGCGCA | 1 cut(s) | 839 |
| GlaI | GCGC | 1 cut(s) | 839 |
| GluI | GCNGC | 5 cut(s) | 238, 300, 387, 487, 665 |
| HaeIII | GGCC | 4 cut(s) | 355, 386, 596, 664 |
| HapII | CCGG | 7 cut(s) | 120, 347, 423, 463, 543, 629, 668 |
| HgaI | GACGC | 1 cut(s) | 55 |
| HhaI | GCGC | 1 cut(s) | 840 |
| Hin1I | GRCGYC | 1 cut(s) | 138 |
| Hin1II | CATG | 3 cut(s) | 625, 812, 827 |
| Hin6I | GCGC | 1 cut(s) | 838 |
| HinP1I | GCGC | 1 cut(s) | 838 |
| HincII | GTYRAC | 1 cut(s) | 9 |
| HindII | GTYRAC | 1 cut(s) | 9 |
| HindIII | AAGCTT | 1 cut(s) | 686 |
| HinfI | GANTC | 4 cut(s) | 5, 110, 254, 377 |
| HpaII | CCGG | 7 cut(s) | 120, 347, 423, 463, 543, 629, 668 |
| HphI | GGTGA | 3 cut(s) | 109, 141, 280 |
| Hpy166II | GTNNAC | 3 cut(s) | 9, 52, 601 |
| Hpy188I | TCNGA | 1 cut(s) | 735 |
| Hpy188III | TCNNGA | 5 cut(s) | 29, 423, 629, 866, 877 |
| Hpy8I | GTNNAC | 3 cut(s) | 9, 52, 601 |
| Hpy99I | CGWCG | 4 cut(s) | 71, 332, 377, 608 |
| HpyAV | CCTTC | 3 cut(s) | 111, 718, 901 |
| HpyCH4III | ACNGT | 1 cut(s) | 758 |
| HpyCH4IV | ACGT | 1 cut(s) | 138 |
| HpyCH4V | TGCA | 2 cut(s) | 574, 646 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 36, 167, 246, 305, 483, 664 |
| HpyF3I | CTNAG | 6 cut(s) | 295, 472, 659, 734, 849, 864 |
| HpySE526I | ACGT | 1 cut(s) | 138 |
| Hsp92I | GRCGYC | 1 cut(s) | 138 |
| Hsp92II | CATG | 3 cut(s) | 625, 812, 827 |
| HspAI | GCGC | 1 cut(s) | 838 |
| Kpn2I | TCCGGA | 2 cut(s) | 422, 628 |
| KroI | GCCGGC | 1 cut(s) | 667 |
| KroNI | GCCGGC | 1 cut(s) | 669 |
| Ksp22I | TGATCA | 1 cut(s) | 873 |
| Kzo9I | GATC | 6 cut(s) | 189, 349, 419, 676, 727, 873 |
| LmnI | GCTCC | 2 cut(s) | 491, 805 |
| LweI | GCATC | 2 cut(s) | 583, 683 |
| MaeII | ACGT | 1 cut(s) | 138 |
| MaeIII | GTNAC | 2 cut(s) | 115, 537 |
| MalI | GATC | 6 cut(s) | 191, 351, 421, 678, 729, 875 |
| MboI | GATC | 6 cut(s) | 189, 349, 419, 676, 727, 873 |
| MboII | GAAGA | 4 cut(s) | 34, 169, 781, 784 |
| MflI | RGATCY | 2 cut(s) | 189, 676 |
| MlyI | GAGTC | 4 cut(s) | 14, 104, 263, 371 |
| MroI | TCCGGA | 2 cut(s) | 422, 628 |
| MroNI | GCCGGC | 1 cut(s) | 667 |
| MseI | TTAA | 1 cut(s) | 459 |
| MslI | CAYNNNNRTG | 1 cut(s) | 813 |
| MspA1I | CMGCKG | 1 cut(s) | 486 |
| MspI | CCGG | 7 cut(s) | 120, 347, 423, 463, 543, 629, 668 |
| MspR9I | CCNGG | 4 cut(s) | 347, 464, 512, 543 |
| MvaI | CCWGG | 1 cut(s) | 512 |
| MvnI | CGCG | 2 cut(s) | 30, 66 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 36, 167, 246, 305, 483, 664 |
| NaeI | GCCGGC | 1 cut(s) | 669 |
| NciI | CCSGG | 3 cut(s) | 347, 464, 543 |
| NdeII | GATC | 6 cut(s) | 189, 349, 419, 676, 727, 873 |
| NgoMIV | GCCGGC | 1 cut(s) | 667 |
| NlaIII | CATG | 3 cut(s) | 625, 812, 827 |
| NlaIV | GGNNCC | 5 cut(s) | 96, 401, 427, 493, 889 |
| NmuCI | GTSAC | 1 cut(s) | 115 |
| NruI | TCGCGA | 1 cut(s) | 30 |
| NsbI | TGCGCA | 1 cut(s) | 839 |
| NspI | RCATGY | 1 cut(s) | 625 |
| PciI | ACATGT | 1 cut(s) | 621 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 318 |
| PdiI | GCCGGC | 1 cut(s) | 669 |
| PflFI | GACNNNGTC | 1 cut(s) | 113 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 511 |
| PfoI | TCCNGGA | 1 cut(s) | 345 |
| PinAI | ACCGGT | 1 cut(s) | 119 |
| PkrI | GCNGC | 5 cut(s) | 239, 301, 388, 488, 666 |
| PleI | GAGTC | 4 cut(s) | 13, 104, 262, 371 |
| PpsI | GAGTC | 4 cut(s) | 13, 104, 262, 371 |
| PpuMI | RGGWCCY | 1 cut(s) | 94 |
| PscI | ACATGT | 1 cut(s) | 621 |
| Psp5II | RGGWCCY | 1 cut(s) | 94 |
| Psp6I | CCWGG | 1 cut(s) | 510 |
| PspEI | GGTNACC | 1 cut(s) | 537 |
| PspGI | CCWGG | 1 cut(s) | 510 |
| PspN4I | GGNNCC | 5 cut(s) | 96, 401, 427, 493, 889 |
| PspPI | GGNCC | 4 cut(s) | 94, 354, 384, 400 |
| PspPPI | RGGWCCY | 1 cut(s) | 94 |
| PsuI | RGATCY | 2 cut(s) | 189, 676 |
| PsyI | GACNNNGTC | 1 cut(s) | 113 |
| RruI | TCGCGA | 1 cut(s) | 30 |
| RsaI | GTAC | 3 cut(s) | 449, 620, 755 |
| RsaNI | GTAC | 3 cut(s) | 448, 619, 754 |
| RseI | CAYNNNNRTG | 1 cut(s) | 813 |
| SaqAI | TTAA | 1 cut(s) | 459 |
| SatI | GCNGC | 5 cut(s) | 238, 300, 387, 487, 665 |
| Sau3AI | GATC | 6 cut(s) | 189, 349, 419, 676, 727, 873 |
| Sau96I | GGNCC | 4 cut(s) | 94, 354, 384, 400 |
| SchI | GAGTC | 4 cut(s) | 14, 104, 263, 371 |
| ScrFI | CCNGG | 4 cut(s) | 347, 464, 512, 543 |
| SfaNI | GCATC | 2 cut(s) | 583, 683 |
| SgrAI | CRCCGGYG | 1 cut(s) | 119 |
| SinI | GGWCC | 2 cut(s) | 94, 400 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 813 |
| StyD4I | CCNGG | 4 cut(s) | 345, 462, 510, 541 |
| StyI | CCWWGG | 1 cut(s) | 132 |
| TaaI | ACNGT | 1 cut(s) | 758 |
| TaiI | ACGT | 1 cut(s) | 141 |
| TaqI | TCGA | 3 cut(s) | 69, 330, 413 |
| TatI | WGTACW | 1 cut(s) | 618 |
| TauI | GCSGC | 5 cut(s) | 240, 302, 389, 489, 667 |
| Tru1I | TTAA | 1 cut(s) | 459 |
| Tru9I | TTAA | 1 cut(s) | 459 |
| TscAI | CASTG | 1 cut(s) | 755 |
| TseFI | GTSAC | 1 cut(s) | 115 |
| Tsp45I | GTSAC | 1 cut(s) | 115 |
| TspDTI | ATGAA | 3 cut(s) | 812, 821, 883 |
| TspGWI | ACGGA | 2 cut(s) | 103, 316 |
| TspRI | CASTG | 1 cut(s) | 755 |
| Tth111I | GACNNNGTC | 1 cut(s) | 113 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 511 |
| VpaK11BI | GGWCC | 2 cut(s) | 94, 400 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 44 |
| XceI | RCATGY | 1 cut(s) | 625 |
| XmiI | GTMKAC | 1 cut(s) | 51 |
| ZraI | GACGTC | 1 cut(s) | 139 |