Domain of unknown function (DUF4283)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 937, 1276 |
| Acc36I | ACCTGC | 4 cut(s) | 556, 937, 1276, 1508 |
| AccB1I | GGYRCC | 3 cut(s) | 1748, 1879, 1937 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1827, 2003 |
| AccBSI | CCGCTC | 1 cut(s) | 583 |
| AccI | GTMKAC | 1 cut(s) | 21 |
| AccII | CGCG | 3 cut(s) | 634, 1836, 1920 |
| AciI | CCGC | 6 cut(s) | 583, 632, 1228, 1476, 1809, 1960 |
| AclWI | GGATC | 4 cut(s) | 252, 758, 1762, 1775 |
| AcoI | YGGCCR | 1 cut(s) | 1829 |
| AcsI | RAATTY | 3 cut(s) | 802, 975, 1405 |
| AcuI | CTGAAG | 3 cut(s) | 764, 852, 864 |
| AfaI | GTAC | 4 cut(s) | 150, 276, 1196, 1380 |
| AfeI | AGCGCT | 1 cut(s) | 1399 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 327, 328, 636, 727, 1336, 1827, 1866, 2003 |
| AflII | CTTAAG | 2 cut(s) | 95, 1772 |
| AflIII | ACRYGT | 1 cut(s) | 1834 |
| AgsI | TTSAA | 5 cut(s) | 258, 594, 678, 712, 1391 |
| AjnI | CCWGG | 4 cut(s) | 1865, 1933, 1940, 1978 |
| AleI | CACNNNNGTG | 2 cut(s) | 131, 1997 |
| Alw26I | GTCTC | 4 cut(s) | 722, 908, 913, 2042 |
| AlwI | GGATC | 4 cut(s) | 252, 758, 1762, 1775 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 839, 1817, 2003 |
| Aor51HI | AGCGCT | 1 cut(s) | 1399 |
| AoxI | GGCC | 4 cut(s) | 572, 923, 1829, 1913 |
| ApoI | RAATTY | 3 cut(s) | 802, 975, 1405 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 975 |
| AspLEI | GCGC | 4 cut(s) | 373, 667, 1400, 1922 |
| AspS9I | GGNCC | 2 cut(s) | 30, 923 |
| AsuHPI | GGTGA | 8 cut(s) | 758, 1184, 1226, 1646, 1663, 1994, 2013, 2032 |
| AsuII | TTCGAA | 1 cut(s) | 2050 |
| AvaII | GGWCC | 1 cut(s) | 30 |
| AxyI | CCTNAGG | 1 cut(s) | 282 |
| BaeGI | GKGCMC | 1 cut(s) | 1882 |
| BalI | TGGCCA | 1 cut(s) | 1831 |
| BamHI | GGATCC | 1 cut(s) | 1767 |
| BanI | GGYRCC | 3 cut(s) | 1748, 1879, 1937 |
| BanII | GRGCYC | 1 cut(s) | 705 |
| BbvCI | CCTCAGC | 1 cut(s) | 71 |
| BccI | CCATC | 2 cut(s) | 1180, 1739 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 985, 1019 |
| BciT130I | CCWGG | 4 cut(s) | 1867, 1935, 1942, 1980 |
| BcoDI | GTCTC | 4 cut(s) | 722, 908, 913, 2042 |
| BfaI | CTAG | 5 cut(s) | 402, 434, 1614, 1683, 1875 |
| BfmI | CTRYAG | 1 cut(s) | 549 |
| BfoI | RGCGCY | 1 cut(s) | 1401 |
| BfrI | CTTAAG | 2 cut(s) | 95, 1772 |
| BfuAI | ACCTGC | 4 cut(s) | 556, 937, 1276, 1508 |
| BlpI | GCTNAGC | 2 cut(s) | 1356, 2061 |
| Bme1390I | CCNGG | 4 cut(s) | 1867, 1935, 1942, 1980 |
| Bme18I | GGWCC | 1 cut(s) | 30 |
| BmgT120I | GGNCC | 2 cut(s) | 30, 923 |
| BmiI | GGNNCC | 5 cut(s) | 1341, 1750, 1769, 1881, 1939 |
| BmrFI | CCNGG | 4 cut(s) | 1867, 1935, 1942, 1980 |
| BmrI | ACTGGG | 1 cut(s) | 1158 |
| BmsI | GCATC | 6 cut(s) | 292, 433, 616, 652, 941, 1540 |
| BmuI | ACTGGG | 1 cut(s) | 1158 |
| BoxI | GACNNNNGTC | 1 cut(s) | 781 |
| BpmI | CTGGAG | 1 cut(s) | 1980 |
| Bpu10I | CCTNAGC | 1 cut(s) | 71 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1356, 2061 |
| Bpu14I | TTCGAA | 1 cut(s) | 2050 |
| BpuEI | CTTGAG | 1 cut(s) | 597 |
| BsaBI | GATNNNNATC | 1 cut(s) | 354 |
| BsaI | GGTCTC | 1 cut(s) | 908 |
| BsaJI | CCNNGG | 4 cut(s) | 770, 807, 1343, 1843 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1798, 1828 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 327, 328, 636, 727, 1336, 1827, 1866, 2003 |
| Bse118I | RCCGGY | 2 cut(s) | 50, 408 |
| Bse1I | ACTGG | 7 cut(s) | 748, 918, 1066, 1153, 1448, 1678, 1997 |
| Bse21I | CCTNAGG | 1 cut(s) | 282 |
| Bse3DI | GCAATG | 1 cut(s) | 1585 |
| Bse8I | GATNNNNATC | 1 cut(s) | 354 |
| BseBI | CCWGG | 4 cut(s) | 1867, 1935, 1942, 1980 |
| BseDI | CCNNGG | 4 cut(s) | 770, 807, 1343, 1843 |
| BseGI | GGATG | 6 cut(s) | 217, 448, 910, 964, 1555, 1750 |
| BseJI | GATNNNNATC | 1 cut(s) | 354 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 327, 328, 636, 727, 1336, 1827, 1866, 2003 |
| BseMI | GCAATG | 1 cut(s) | 1585 |
| BseMII | CTCAG | 7 cut(s) | 62, 296, 465, 569, 924, 945, 1347 |
| BseNI | ACTGG | 7 cut(s) | 748, 918, 1066, 1153, 1448, 1678, 1997 |
| BseRI | GAGGAG | 2 cut(s) | 759, 1801 |
| BseSI | GKGCMC | 1 cut(s) | 1882 |
| BsgI | GTGCAG | 4 cut(s) | 1211, 1248, 1536, 1812 |
| Bsh1236I | CGCG | 3 cut(s) | 634, 1836, 1920 |
| Bsh1285I | CGRYCG | 3 cut(s) | 16, 28, 995 |
| BshFI | GGCC | 4 cut(s) | 574, 925, 1831, 1915 |
| BshNI | GGYRCC | 3 cut(s) | 1748, 1879, 1937 |
| BsiEI | CGRYCG | 3 cut(s) | 16, 28, 995 |
| BsiSI | CCGG | 2 cut(s) | 51, 409 |
| BslFI | GGGAC | 3 cut(s) | 89, 344, 1165 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 327, 328, 636, 727, 1336, 1827, 1866, 2003 |
| BsmAI | GTCTC | 4 cut(s) | 722, 908, 913, 2042 |
| BsmBI | CGTCTC | 1 cut(s) | 722 |
| BsmFI | GGGAC | 3 cut(s) | 89, 344, 1165 |
| BsmI | GAATGC | 1 cut(s) | 589 |
| BsnI | GGCC | 4 cut(s) | 574, 925, 1831, 1915 |
| Bso31I | GGTCTC | 1 cut(s) | 908 |
| Bsp119I | TTCGAA | 1 cut(s) | 2050 |
| Bsp1286I | GDGCHC | 2 cut(s) | 705, 1882 |
| Bsp1407I | TGTACA | 2 cut(s) | 274, 1378 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1356, 2061 |
| Bsp19I | CCATGG | 1 cut(s) | 807 |
| BspACI | CCGC | 6 cut(s) | 583, 632, 1228, 1476, 1809, 1960 |
| BspANI | GGCC | 4 cut(s) | 574, 925, 1831, 1915 |
| BspCNI | CTCAG | 7 cut(s) | 63, 295, 466, 568, 923, 946, 1348 |
| BspFNI | CGCG | 3 cut(s) | 634, 1836, 1920 |
| BspHI | TCATGA | 1 cut(s) | 979 |
| BspLI | GGNNCC | 5 cut(s) | 1341, 1750, 1769, 1881, 1939 |
| BspMAI | CTGCAG | 1 cut(s) | 553 |
| BspMI | ACCTGC | 4 cut(s) | 556, 937, 1276, 1508 |
| BspPI | GGATC | 4 cut(s) | 252, 758, 1762, 1775 |
| BspT104I | TTCGAA | 1 cut(s) | 2050 |
| BspT107I | GGYRCC | 3 cut(s) | 1748, 1879, 1937 |
| BspTI | CTTAAG | 2 cut(s) | 95, 1772 |
| BspTNI | GGTCTC | 1 cut(s) | 908 |
| BsrBI | CCGCTC | 1 cut(s) | 583 |
| BsrDI | GCAATG | 1 cut(s) | 1585 |
| BsrFI | RCCGGY | 2 cut(s) | 50, 408 |
| BsrGI | TGTACA | 2 cut(s) | 274, 1378 |
| BsrI | ACTGG | 7 cut(s) | 748, 918, 1066, 1153, 1448, 1678, 1997 |
| BssAI | RCCGGY | 2 cut(s) | 50, 408 |
| BssECI | CCNNGG | 4 cut(s) | 770, 807, 1343, 1843 |
| BssT1I | CCWWGG | 2 cut(s) | 807, 1343 |
| Bst2UI | CCWGG | 4 cut(s) | 1867, 1935, 1942, 1980 |
| Bst4CI | ACNGT | 4 cut(s) | 218, 817, 1022, 1199 |
| BstAFI | CTTAAG | 2 cut(s) | 95, 1772 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 839, 1472, 1730, 1817 |
| BstAUI | TGTACA | 2 cut(s) | 274, 1378 |
| BstBI | TTCGAA | 1 cut(s) | 2050 |
| BstC8I | GCNNGC | 7 cut(s) | 167, 410, 1067, 1396, 1949, 2067, 2071 |
| BstDSI | CCRYGG | 2 cut(s) | 807, 1843 |
| BstF5I | GGATG | 6 cut(s) | 217, 448, 910, 964, 1555, 1750 |
| BstFNI | CGCG | 3 cut(s) | 634, 1836, 1920 |
| BstH2I | RGCGCY | 1 cut(s) | 1401 |
| BstHHI | GCGC | 4 cut(s) | 373, 667, 1400, 1922 |
| BstMAI | GTCTC | 4 cut(s) | 722, 908, 913, 2042 |
| BstMCI | CGRYCG | 3 cut(s) | 16, 28, 995 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 443, 580, 839, 1472, 1730, 1817, 1957, 2066 |
| BstNI | CCWGG | 4 cut(s) | 1867, 1935, 1942, 1980 |
| BstNSI | RCATGY | 2 cut(s) | 275, 1951 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 781 |
| BstSCI | CCNGG | 4 cut(s) | 1865, 1933, 1940, 1978 |
| BstSFI | CTRYAG | 1 cut(s) | 549 |
| BstSLI | GKGCMC | 1 cut(s) | 1882 |
| BstUI | CGCG | 3 cut(s) | 634, 1836, 1920 |
| BstX2I | RGATCY | 1 cut(s) | 1767 |
| BstYI | RGATCY | 1 cut(s) | 1767 |
| Bsu36I | CCTNAGG | 1 cut(s) | 282 |
| BsuRI | GGCC | 4 cut(s) | 574, 925, 1831, 1915 |
| BtgI | CCRYGG | 2 cut(s) | 807, 1843 |
| BtsCI | GGATG | 6 cut(s) | 217, 448, 910, 964, 1555, 1750 |
| BtsI | GCAGTG | 2 cut(s) | 1860, 1958 |
| BtsIMutI | CAGTG | 9 cut(s) | 223, 741, 925, 1027, 1181, 1204, 1860, 1958, 2004 |
| BveI | ACCTGC | 4 cut(s) | 556, 937, 1276, 1508 |
| Cac8I | GCNNGC | 7 cut(s) | 167, 410, 1067, 1396, 1949, 2067, 2071 |
| CaiI | CAGNNNCTG | 3 cut(s) | 839, 1817, 2003 |
| CciI | TCATGA | 1 cut(s) | 979 |
| CfoI | GCGC | 4 cut(s) | 373, 667, 1400, 1922 |
| Cfr10I | RCCGGY | 2 cut(s) | 50, 408 |
| Cfr13I | GGNCC | 2 cut(s) | 30, 923 |
| CseI | GACGC | 3 cut(s) | 70, 623, 704 |
| CsiI | ACCWGGT | 1 cut(s) | 1933 |
| Csp6I | GTAC | 4 cut(s) | 149, 275, 1195, 1379 |
| CviQI | GTAC | 4 cut(s) | 149, 275, 1195, 1379 |
| DraI | TTTAAA | 1 cut(s) | 156 |
| EaeI | YGGCCR | 1 cut(s) | 1829 |
| EciI | GGCGGA | 1 cut(s) | 1243 |
| Eco130I | CCWWGG | 2 cut(s) | 807, 1343 |
| Eco147I | AGGCCT | 1 cut(s) | 1915 |
| Eco24I | GRGCYC | 1 cut(s) | 705 |
| Eco31I | GGTCTC | 1 cut(s) | 908 |
| Eco32I | GATATC | 1 cut(s) | 1233 |
| Eco47I | GGWCC | 1 cut(s) | 30 |
| Eco47III | AGCGCT | 1 cut(s) | 1399 |
| Eco57I | CTGAAG | 3 cut(s) | 764, 852, 864 |
| Eco81I | CCTNAGG | 1 cut(s) | 282 |
| EcoRII | CCWGG | 4 cut(s) | 1865, 1933, 1940, 1978 |
| EcoRV | GATATC | 1 cut(s) | 1233 |
| EcoT14I | CCWWGG | 2 cut(s) | 807, 1343 |
| EcoT22I | ATGCAT | 1 cut(s) | 1735 |
| EcoT38I | GRGCYC | 1 cut(s) | 705 |
| ErhI | CCWWGG | 2 cut(s) | 807, 1343 |
| Esp3I | CGTCTC | 1 cut(s) | 722 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1593, 1625 |
| FaqI | GGGAC | 3 cut(s) | 89, 344, 1165 |
| FauI | CCCGC | 2 cut(s) | 639, 1953 |
| FblI | GTMKAC | 1 cut(s) | 21 |
| FokI | GGATG | 6 cut(s) | 224, 455, 917, 971, 1562, 1757 |
| FriOI | GRGCYC | 1 cut(s) | 705 |
| FspBI | CTAG | 5 cut(s) | 402, 434, 1614, 1683, 1875 |
| GlaI | GCGC | 4 cut(s) | 372, 666, 1399, 1921 |
| GsuI | CTGGAG | 1 cut(s) | 1980 |
| HaeII | RGCGCY | 1 cut(s) | 1401 |
| HaeIII | GGCC | 4 cut(s) | 574, 925, 1831, 1915 |
| HapII | CCGG | 2 cut(s) | 51, 409 |
| HgaI | GACGC | 3 cut(s) | 70, 623, 704 |
| HhaI | GCGC | 4 cut(s) | 373, 667, 1400, 1922 |
| Hin6I | GCGC | 4 cut(s) | 371, 665, 1398, 1920 |
| HinP1I | GCGC | 4 cut(s) | 371, 665, 1398, 1920 |
| HincII | GTYRAC | 2 cut(s) | 22, 1256 |
| HindII | GTYRAC | 2 cut(s) | 22, 1256 |
| HindIII | AAGCTT | 1 cut(s) | 92 |
| HpaII | CCGG | 2 cut(s) | 51, 409 |
| HphI | GGTGA | 8 cut(s) | 758, 1184, 1226, 1646, 1663, 1994, 2013, 2032 |
| Hpy166II | GTNNAC | 4 cut(s) | 22, 741, 1256, 1294 |
| Hpy188I | TCNGA | 7 cut(s) | 30, 475, 558, 913, 1075, 1087, 1411 |
| Hpy188III | TCNNGA | 8 cut(s) | 284, 402, 870, 980, 1337, 1560, 1614, 1742 |
| Hpy8I | GTNNAC | 4 cut(s) | 22, 741, 1256, 1294 |
| Hpy99I | CGWCG | 4 cut(s) | 14, 26, 86, 639 |
| HpyAV | CCTTC | 4 cut(s) | 546, 1080, 1088, 1420 |
| HpyCH4III | ACNGT | 4 cut(s) | 218, 817, 1022, 1199 |
| HpyCH4IV | ACGT | 1 cut(s) | 737 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 443, 580, 839, 1472, 1730, 1817, 1957, 2066 |
| HpySE526I | ACGT | 1 cut(s) | 737 |
| HspAI | GCGC | 4 cut(s) | 371, 665, 1398, 1920 |
| KroI | GCCGGC | 1 cut(s) | 408 |
| KroNI | GCCGGC | 1 cut(s) | 410 |
| LmnI | GCTCC | 6 cut(s) | 6, 1339, 1405, 1819, 1944, 2020 |
| LweI | GCATC | 6 cut(s) | 292, 433, 616, 652, 941, 1540 |
| MabI | ACCWGGT | 1 cut(s) | 1933 |
| MaeI | CTAG | 5 cut(s) | 402, 434, 1614, 1683, 1875 |
| MaeII | ACGT | 1 cut(s) | 737 |
| MaeIII | GTNAC | 7 cut(s) | 506, 746, 850, 1163, 1172, 1761, 1837 |
| MbiI | CCGCTC | 1 cut(s) | 583 |
| MboII | GAAGA | 7 cut(s) | 188, 311, 857, 858, 983, 1494, 1842 |
| MflI | RGATCY | 1 cut(s) | 1767 |
| MhlI | GDGCHC | 2 cut(s) | 705, 1882 |
| MlsI | TGGCCA | 1 cut(s) | 1831 |
| MluI | ACGCGT | 1 cut(s) | 1834 |
| MluNI | TGGCCA | 1 cut(s) | 1831 |
| MlyI | GAGTC | 3 cut(s) | 27, 743, 1137 |
| Mox20I | TGGCCA | 1 cut(s) | 1831 |
| Mph1103I | ATGCAT | 1 cut(s) | 1735 |
| MroNI | GCCGGC | 1 cut(s) | 408 |
| MroXI | GAANNNNTTC | 1 cut(s) | 975 |
| MscI | TGGCCA | 1 cut(s) | 1831 |
| MslI | CAYNNNNRTG | 3 cut(s) | 131, 1301, 1997 |
| Msp20I | TGGCCA | 1 cut(s) | 1831 |
| MspA1I | CMGCKG | 1 cut(s) | 449 |
| MspCI | CTTAAG | 2 cut(s) | 95, 1772 |
| MspI | CCGG | 2 cut(s) | 51, 409 |
| MspR9I | CCNGG | 4 cut(s) | 1867, 1935, 1942, 1980 |
| Mva1269I | GAATGC | 1 cut(s) | 589 |
| MvaI | CCWGG | 4 cut(s) | 1867, 1935, 1942, 1980 |
| MvnI | CGCG | 3 cut(s) | 634, 1836, 1920 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 443, 580, 839, 1472, 1730, 1817, 1957, 2066 |
| NaeI | GCCGGC | 1 cut(s) | 410 |
| NcoI | CCATGG | 1 cut(s) | 807 |
| NgoMIV | GCCGGC | 1 cut(s) | 408 |
| NlaIV | GGNNCC | 5 cut(s) | 1341, 1750, 1769, 1881, 1939 |
| NmeAIII | GCCGAG | 1 cut(s) | 751 |
| NmuCI | GTSAC | 4 cut(s) | 506, 746, 1172, 1761 |
| NsiI | ATGCAT | 1 cut(s) | 1735 |
| NspI | RCATGY | 2 cut(s) | 275, 1951 |
| NspV | TTCGAA | 1 cut(s) | 2050 |
| OliI | CACNNNNGTG | 2 cut(s) | 131, 1997 |
| PaeI | GCATGC | 1 cut(s) | 1951 |
| PagI | TCATGA | 1 cut(s) | 979 |
| PaqCI | CACCTGC | 2 cut(s) | 937, 1276 |
| PceI | AGGCCT | 1 cut(s) | 1915 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 18, 892, 1840 |
| PctI | GAATGC | 1 cut(s) | 589 |
| PdiI | GCCGGC | 1 cut(s) | 410 |
| PdmI | GAANNNNTTC | 1 cut(s) | 975 |
| PfeI | GAWTC | 9 cut(s) | 56, 221, 287, 350, 568, 1076, 1481, 1556, 1964 |
| PflFI | GACNNNGTC | 2 cut(s) | 80, 891 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1827, 2003 |
| Ple19I | CGATCG | 3 cut(s) | 16, 28, 995 |
| PleI | GAGTC | 3 cut(s) | 26, 743, 1136 |
| PpsI | GAGTC | 3 cut(s) | 26, 743, 1136 |
| PshAI | GACNNNNGTC | 1 cut(s) | 781 |
| Psp6I | CCWGG | 4 cut(s) | 1865, 1933, 1940, 1978 |
| PspGI | CCWGG | 4 cut(s) | 1865, 1933, 1940, 1978 |
| PspN4I | GGNNCC | 5 cut(s) | 1341, 1750, 1769, 1881, 1939 |
| PspPI | GGNCC | 2 cut(s) | 30, 923 |
| PstI | CTGCAG | 1 cut(s) | 553 |
| PstNI | CAGNNNCTG | 3 cut(s) | 839, 1817, 2003 |
| PsuI | RGATCY | 1 cut(s) | 1767 |
| PsyI | GACNNNGTC | 2 cut(s) | 80, 891 |
| PvuI | CGATCG | 3 cut(s) | 16, 28, 995 |
| PvuII | CAGCTG | 1 cut(s) | 449 |
| RsaI | GTAC | 4 cut(s) | 150, 276, 1196, 1380 |
| RsaNI | GTAC | 4 cut(s) | 149, 275, 1195, 1379 |
| RseI | CAYNNNNRTG | 3 cut(s) | 131, 1301, 1997 |
| SalI | GTCGAC | 1 cut(s) | 20 |
| Sau96I | GGNCC | 2 cut(s) | 30, 923 |
| SchI | GAGTC | 3 cut(s) | 27, 743, 1137 |
| ScrFI | CCNGG | 4 cut(s) | 1867, 1935, 1942, 1980 |
| SduI | GDGCHC | 2 cut(s) | 705, 1882 |
| SexAI | ACCWGGT | 1 cut(s) | 1933 |
| SfaNI | GCATC | 6 cut(s) | 292, 433, 616, 652, 941, 1540 |
| SfcI | CTRYAG | 1 cut(s) | 549 |
| SfuI | TTCGAA | 1 cut(s) | 2050 |
| SinI | GGWCC | 1 cut(s) | 30 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 131, 1301, 1997 |
| SmlI | CTYRAG | 3 cut(s) | 95, 612, 1772 |
| SmoI | CTYRAG | 3 cut(s) | 95, 612, 1772 |
| SphI | GCATGC | 1 cut(s) | 1951 |
| SseBI | AGGCCT | 1 cut(s) | 1915 |
| SsiI | CCGC | 6 cut(s) | 583, 632, 1228, 1476, 1809, 1960 |
| SspI | AATATT | 1 cut(s) | 622 |
| SspMI | CTAG | 5 cut(s) | 402, 434, 1614, 1683, 1875 |
| StuI | AGGCCT | 1 cut(s) | 1915 |
| StyD4I | CCNGG | 4 cut(s) | 1865, 1933, 1940, 1978 |
| StyI | CCWWGG | 2 cut(s) | 807, 1343 |
| TaaI | ACNGT | 4 cut(s) | 218, 817, 1022, 1199 |
| TaiI | ACGT | 1 cut(s) | 740 |
| TaqI | TCGA | 6 cut(s) | 12, 16, 21, 886, 995, 2050 |
| TatI | WGTACW | 4 cut(s) | 148, 274, 1194, 1378 |
| TauI | GCSGC | 2 cut(s) | 586, 1478 |
| TfiI | GAWTC | 9 cut(s) | 56, 221, 287, 350, 568, 1076, 1481, 1556, 1964 |
| TscAI | CASTG | 9 cut(s) | 223, 748, 925, 1027, 1188, 1204, 1867, 1958, 2004 |
| TseFI | GTSAC | 4 cut(s) | 506, 746, 1172, 1761 |
| Tsp45I | GTSAC | 4 cut(s) | 506, 746, 1172, 1761 |
| TspGWI | ACGGA | 4 cut(s) | 647, 710, 1291, 1780 |
| TspRI | CASTG | 9 cut(s) | 223, 748, 925, 1027, 1188, 1204, 1867, 1958, 2004 |
| Tth111I | GACNNNGTC | 2 cut(s) | 80, 891 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1827, 2003 |
| Vha464I | CTTAAG | 2 cut(s) | 95, 1772 |
| VpaK11BI | GGWCC | 1 cut(s) | 30 |
| XapI | RAATTY | 3 cut(s) | 802, 975, 1405 |
| XbaI | TCTAGA | 2 cut(s) | 401, 1613 |
| XceI | RCATGY | 2 cut(s) | 275, 1951 |
| XmiI | GTMKAC | 1 cut(s) | 21 |
| XmnI | GAANNNNTTC | 1 cut(s) | 975 |
| XspI | CTAG | 5 cut(s) | 402, 434, 1614, 1683, 1875 |
| Zsp2I | ATGCAT | 1 cut(s) | 1735 |