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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 169 |
| AclI | AACGTT | 1 cut(s) | 295 |
| AclWI | GGATC | 2 cut(s) | 91, 106 |
| AcsI | RAATTY | 2 cut(s) | 474, 568 |
| AfaI | GTAC | 1 cut(s) | 391 |
| AfeI | AGCGCT | 1 cut(s) | 442 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 73 |
| AgsI | TTSAA | 6 cut(s) | 300, 353, 472, 538, 628, 683 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 128 |
| AluBI | AGCT | 3 cut(s) | 466, 503, 707 |
| AluI | AGCT | 3 cut(s) | 466, 503, 707 |
| Alw26I | GTCTC | 3 cut(s) | 62, 154, 319 |
| AlwI | GGATC | 2 cut(s) | 91, 106 |
| Aor51HI | AGCGCT | 1 cut(s) | 442 |
| AoxI | GGCC | 2 cut(s) | 106, 182 |
| ApeKI | GCWGC | 2 cut(s) | 309, 365 |
| ApoI | RAATTY | 2 cut(s) | 474, 568 |
| AspLEI | GCGC | 1 cut(s) | 443 |
| AspS9I | GGNCC | 1 cut(s) | 106 |
| AsuHPI | GGTGA | 1 cut(s) | 235 |
| BanII | GRGCYC | 1 cut(s) | 8 |
| BbsI | GAAGAC | 1 cut(s) | 690 |
| BbvI | GCAGC | 2 cut(s) | 321, 352 |
| BccI | CCATC | 5 cut(s) | 218, 271, 401, 554, 601 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 357, 391 |
| BcoDI | GTCTC | 3 cut(s) | 62, 154, 319 |
| BfaI | CTAG | 2 cut(s) | 635, 645 |
| BfoI | RGCGCY | 1 cut(s) | 444 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 362 |
| BisI | GCNGC | 3 cut(s) | 170, 310, 366 |
| BlsI | GCNGC | 3 cut(s) | 171, 311, 367 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 128 |
| BmgT120I | GGNCC | 1 cut(s) | 106 |
| BmiI | GGNNCC | 1 cut(s) | 7 |
| BmrI | ACTGGG | 1 cut(s) | 113 |
| BmsI | GCATC | 1 cut(s) | 501 |
| BmuI | ACTGGG | 1 cut(s) | 113 |
| BpiI | GAAGAC | 1 cut(s) | 690 |
| Bpu10I | CCTNAGC | 1 cut(s) | 437 |
| BpuEI | CTTGAG | 1 cut(s) | 136 |
| Bsa29I | ATCGAT | 1 cut(s) | 662 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 31 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 73 |
| Bse1I | ACTGG | 1 cut(s) | 108 |
| BseCI | ATCGAT | 1 cut(s) | 662 |
| BseGI | GGATG | 3 cut(s) | 41, 274, 565 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 73 |
| BseMII | CTCAG | 2 cut(s) | 315, 476 |
| BseNI | ACTGG | 1 cut(s) | 108 |
| BseXI | GCAGC | 2 cut(s) | 321, 352 |
| BsgI | GTGCAG | 2 cut(s) | 328, 351 |
| BshFI | GGCC | 2 cut(s) | 108, 184 |
| BshVI | ATCGAT | 1 cut(s) | 662 |
| BsiSI | CCGG | 1 cut(s) | 362 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 73 |
| BsmAI | GTCTC | 3 cut(s) | 62, 154, 319 |
| BsmBI | CGTCTC | 1 cut(s) | 319 |
| BsnI | GGCC | 2 cut(s) | 108, 184 |
| Bsp1286I | GDGCHC | 1 cut(s) | 8 |
| Bsp143I | GATC | 7 cut(s) | 31, 96, 111, 195, 659, 663, 731 |
| BspACI | CCGC | 1 cut(s) | 169 |
| BspANI | GGCC | 2 cut(s) | 108, 184 |
| BspCNI | CTCAG | 2 cut(s) | 316, 475 |
| BspDI | ATCGAT | 1 cut(s) | 662 |
| BspHI | TCATGA | 1 cut(s) | 673 |
| BspLI | GGNNCC | 1 cut(s) | 7 |
| BspPI | GGATC | 2 cut(s) | 91, 106 |
| BsrI | ACTGG | 1 cut(s) | 108 |
| BssMI | GATC | 7 cut(s) | 31, 96, 111, 195, 659, 663, 731 |
| Bst6I | CTCTTC | 1 cut(s) | 66 |
| BstDEI | CTNAG | 4 cut(s) | 217, 324, 437, 462 |
| BstF5I | GGATG | 3 cut(s) | 41, 274, 565 |
| BstH2I | RGCGCY | 1 cut(s) | 444 |
| BstHHI | GCGC | 1 cut(s) | 443 |
| BstKTI | GATC | 7 cut(s) | 34, 99, 114, 198, 662, 666, 734 |
| BstMAI | GTCTC | 3 cut(s) | 62, 154, 319 |
| BstMBI | GATC | 7 cut(s) | 31, 96, 111, 195, 659, 663, 731 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 362, 713 |
| BstNSI | RCATGY | 1 cut(s) | 30 |
| BstV1I | GCAGC | 2 cut(s) | 321, 352 |
| BstV2I | GAAGAC | 1 cut(s) | 690 |
| BstX2I | RGATCY | 1 cut(s) | 111 |
| BstYI | RGATCY | 1 cut(s) | 111 |
| Bsu15I | ATCGAT | 1 cut(s) | 662 |
| BsuRI | GGCC | 2 cut(s) | 108, 184 |
| BsuTUI | ATCGAT | 1 cut(s) | 662 |
| BtsCI | GGATG | 3 cut(s) | 41, 274, 565 |
| BtsI | GCAGTG | 1 cut(s) | 723 |
| BtsIMutI | CAGTG | 3 cut(s) | 101, 134, 723 |
| CciI | TCATGA | 1 cut(s) | 673 |
| CfoI | GCGC | 1 cut(s) | 443 |
| Cfr13I | GGNCC | 1 cut(s) | 106 |
| ClaI | ATCGAT | 1 cut(s) | 662 |
| CseI | GACGC | 2 cut(s) | 239, 301 |
| Csp6I | GTAC | 1 cut(s) | 390 |
| CviAII | CATG | 4 cut(s) | 27, 54, 193, 674 |
| CviQI | GTAC | 1 cut(s) | 390 |
| DdeI | CTNAG | 4 cut(s) | 217, 324, 437, 462 |
| DpnI | GATC | 7 cut(s) | 33, 98, 113, 197, 661, 665, 733 |
| DpnII | GATC | 7 cut(s) | 31, 96, 111, 195, 659, 663, 731 |
| DriI | GACNNNNNGTC | 1 cut(s) | 128 |
| Eam1104I | CTCTTC | 1 cut(s) | 66 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 128 |
| EarI | CTCTTC | 1 cut(s) | 66 |
| Eco24I | GRGCYC | 1 cut(s) | 8 |
| Eco47III | AGCGCT | 1 cut(s) | 442 |
| EcoT38I | GRGCYC | 1 cut(s) | 8 |
| Esp3I | CGTCTC | 1 cut(s) | 319 |
| FaeI | CATG | 4 cut(s) | 30, 57, 196, 677 |
| FaiI | YATR | 6 cut(s) | 28, 55, 147, 194, 387, 675 |
| FatI | CATG | 4 cut(s) | 26, 53, 192, 673 |
| Fnu4HI | GCNGC | 3 cut(s) | 170, 310, 366 |
| FokI | GGATG | 3 cut(s) | 28, 281, 572 |
| FriOI | GRGCYC | 1 cut(s) | 8 |
| Fsp4HI | GCNGC | 3 cut(s) | 170, 310, 366 |
| FspBI | CTAG | 2 cut(s) | 635, 645 |
| GlaI | GCGC | 1 cut(s) | 442 |
| GluI | GCNGC | 3 cut(s) | 170, 310, 366 |
| HaeII | RGCGCY | 1 cut(s) | 444 |
| HaeIII | GGCC | 2 cut(s) | 108, 184 |
| HapII | CCGG | 1 cut(s) | 362 |
| HgaI | GACGC | 2 cut(s) | 239, 301 |
| HhaI | GCGC | 1 cut(s) | 443 |
| Hin1II | CATG | 4 cut(s) | 30, 57, 196, 677 |
| Hin6I | GCGC | 1 cut(s) | 441 |
| HinP1I | GCGC | 1 cut(s) | 441 |
| HinfI | GANTC | 3 cut(s) | 123, 415, 631 |
| HpaII | CCGG | 1 cut(s) | 362 |
| HphI | GGTGA | 1 cut(s) | 235 |
| Hpy166II | GTNNAC | 1 cut(s) | 243 |
| Hpy188I | TCNGA | 6 cut(s) | 68, 180, 268, 291, 493, 736 |
| Hpy188III | TCNNGA | 3 cut(s) | 479, 645, 674 |
| Hpy8I | GTNNAC | 1 cut(s) | 243 |
| Hpy99I | CGWCG | 2 cut(s) | 233, 382 |
| HpyAV | CCTTC | 3 cut(s) | 182, 256, 468 |
| HpyCH4IV | ACGT | 1 cut(s) | 295 |
| HpyCH4V | TGCA | 4 cut(s) | 309, 368, 514, 620 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 362, 713 |
| HpyF3I | CTNAG | 4 cut(s) | 217, 324, 437, 462 |
| HpySE526I | ACGT | 1 cut(s) | 295 |
| Hsp92II | CATG | 4 cut(s) | 30, 57, 196, 677 |
| HspAI | GCGC | 1 cut(s) | 441 |
| Kzo9I | GATC | 7 cut(s) | 31, 96, 111, 195, 659, 663, 731 |
| LmnI | GCTCC | 1 cut(s) | 11 |
| Lsp1109I | GCAGC | 2 cut(s) | 321, 352 |
| LweI | GCATC | 1 cut(s) | 501 |
| MaeI | CTAG | 2 cut(s) | 635, 645 |
| MaeII | ACGT | 1 cut(s) | 295 |
| MaeIII | GTNAC | 1 cut(s) | 80 |
| MalI | GATC | 7 cut(s) | 33, 98, 113, 197, 661, 665, 733 |
| MboI | GATC | 7 cut(s) | 31, 96, 111, 195, 659, 663, 731 |
| MboII | GAAGA | 4 cut(s) | 83, 190, 640, 695 |
| MfeI | CAATTG | 1 cut(s) | 234 |
| MflI | RGATCY | 1 cut(s) | 111 |
| MhlI | GDGCHC | 1 cut(s) | 8 |
| MluCI | AATT | 5 cut(s) | 234, 284, 348, 474, 568 |
| MlyI | GAGTC | 1 cut(s) | 117 |
| MmeI | TCCRAC | 2 cut(s) | 379, 471 |
| MspI | CCGG | 1 cut(s) | 362 |
| MunI | CAATTG | 1 cut(s) | 234 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 362, 713 |
| NdeII | GATC | 7 cut(s) | 31, 96, 111, 195, 659, 663, 731 |
| NlaIII | CATG | 4 cut(s) | 30, 57, 196, 677 |
| NlaIV | GGNNCC | 1 cut(s) | 7 |
| NmuCI | GTSAC | 1 cut(s) | 80 |
| NspI | RCATGY | 1 cut(s) | 30 |
| PagI | TCATGA | 1 cut(s) | 673 |
| PfeI | GAWTC | 2 cut(s) | 415, 631 |
| PkrI | GCNGC | 3 cut(s) | 171, 311, 367 |
| PleI | GAGTC | 1 cut(s) | 117 |
| PpsI | GAGTC | 1 cut(s) | 117 |
| Psp1406I | AACGTT | 1 cut(s) | 295 |
| PspN4I | GGNNCC | 1 cut(s) | 7 |
| PspPI | GGNCC | 1 cut(s) | 106 |
| PsuI | RGATCY | 1 cut(s) | 111 |
| RsaI | GTAC | 1 cut(s) | 391 |
| RsaNI | GTAC | 1 cut(s) | 390 |
| SatI | GCNGC | 3 cut(s) | 170, 310, 366 |
| Sau3AI | GATC | 7 cut(s) | 31, 96, 111, 195, 659, 663, 731 |
| Sau96I | GGNCC | 1 cut(s) | 106 |
| SchI | GAGTC | 1 cut(s) | 117 |
| SduI | GDGCHC | 1 cut(s) | 8 |
| SetI | ASST | 8 cut(s) | 66, 248, 298, 438, 468, 488, 505, 709 |
| SfaNI | GCATC | 1 cut(s) | 501 |
| SmlI | CTYRAG | 1 cut(s) | 151 |
| SmoI | CTYRAG | 1 cut(s) | 151 |
| Sse9I | AATT | 5 cut(s) | 234, 284, 348, 474, 568 |
| SsiI | CCGC | 1 cut(s) | 169 |
| SspMI | CTAG | 2 cut(s) | 635, 645 |
| TaiI | ACGT | 1 cut(s) | 298 |
| TaqI | TCGA | 3 cut(s) | 377, 662, 730 |
| TasI | AATT | 5 cut(s) | 234, 284, 348, 474, 568 |
| TauI | GCSGC | 1 cut(s) | 172 |
| TfiI | GAWTC | 2 cut(s) | 415, 631 |
| TscAI | CASTG | 3 cut(s) | 108, 141, 723 |
| TseFI | GTSAC | 1 cut(s) | 80 |
| TseI | GCWGC | 2 cut(s) | 309, 365 |
| Tsp45I | GTSAC | 1 cut(s) | 80 |
| TspDTI | ATGAA | 1 cut(s) | 662 |
| TspRI | CASTG | 3 cut(s) | 108, 141, 723 |
| XapI | RAATTY | 2 cut(s) | 474, 568 |
| XbaI | TCTAGA | 1 cut(s) | 644 |
| XceI | RCATGY | 1 cut(s) | 30 |
| XspI | CTAG | 2 cut(s) | 635, 645 |