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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 102 |
| Acc36I | ACCTGC | 2 cut(s) | 392, 529 |
| AccI | GTMKAC | 1 cut(s) | 543 |
| AccII | CGCG | 1 cut(s) | 164 |
| AciI | CCGC | 4 cut(s) | 30, 96, 162, 494 |
| AflII | CTTAAG | 1 cut(s) | 53 |
| AgsI | TTSAA | 4 cut(s) | 132, 205, 310, 449 |
| AluBI | AGCT | 5 cut(s) | 128, 186, 194, 333, 428 |
| AluI | AGCT | 5 cut(s) | 128, 186, 194, 333, 428 |
| Alw26I | GTCTC | 4 cut(s) | 27, 70, 260, 382 |
| AoxI | GGCC | 1 cut(s) | 485 |
| ApeKI | GCWGC | 4 cut(s) | 98, 191, 428, 535 |
| AspLEI | GCGC | 2 cut(s) | 103, 166 |
| AspS9I | GGNCC | 2 cut(s) | 49, 136 |
| AvaII | GGWCC | 2 cut(s) | 49, 136 |
| BbvI | GCAGC | 4 cut(s) | 85, 203, 415, 547 |
| BceAI | ACGGC | 1 cut(s) | 52 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 158, 192 |
| BciVI | GTATCC | 1 cut(s) | 256 |
| BcoDI | GTCTC | 4 cut(s) | 27, 70, 260, 382 |
| BfaI | CTAG | 1 cut(s) | 117 |
| BfmI | CTRYAG | 1 cut(s) | 441 |
| BfrI | CTTAAG | 1 cut(s) | 53 |
| BfuAI | ACCTGC | 2 cut(s) | 392, 529 |
| BfuI | GTATCC | 1 cut(s) | 256 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 484 |
| BisI | GCNGC | 4 cut(s) | 99, 192, 429, 536 |
| BlsI | GCNGC | 4 cut(s) | 100, 193, 430, 537 |
| Bme18I | GGWCC | 2 cut(s) | 49, 136 |
| BmgT120I | GGNCC | 2 cut(s) | 49, 136 |
| BmiI | GGNNCC | 1 cut(s) | 348 |
| BmsI | GCATC | 1 cut(s) | 166 |
| BpmI | CTGGAG | 1 cut(s) | 319 |
| BpuEI | CTTGAG | 3 cut(s) | 242, 364, 494 |
| BsaI | GGTCTC | 1 cut(s) | 260 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 76, 106 |
| BseGI | GGATG | 2 cut(s) | 225, 328 |
| BseMII | CTCAG | 1 cut(s) | 471 |
| BseXI | GCAGC | 4 cut(s) | 85, 203, 415, 547 |
| BsgI | GTGCAG | 1 cut(s) | 554 |
| Bsh1236I | CGCG | 1 cut(s) | 164 |
| BshFI | GGCC | 1 cut(s) | 487 |
| BsmAI | GTCTC | 4 cut(s) | 27, 70, 260, 382 |
| BsmBI | CGTCTC | 2 cut(s) | 27, 70 |
| BsmI | GAATGC | 1 cut(s) | 559 |
| BsnI | GGCC | 1 cut(s) | 487 |
| Bso31I | GGTCTC | 1 cut(s) | 260 |
| Bsp143I | GATC | 2 cut(s) | 222, 465 |
| BspACI | CCGC | 4 cut(s) | 30, 96, 162, 494 |
| BspANI | GGCC | 1 cut(s) | 487 |
| BspCNI | CTCAG | 1 cut(s) | 472 |
| BspFNI | CGCG | 1 cut(s) | 164 |
| BspLI | GGNNCC | 1 cut(s) | 348 |
| BspMAI | CTGCAG | 1 cut(s) | 445 |
| BspMI | ACCTGC | 2 cut(s) | 392, 529 |
| BspTI | CTTAAG | 1 cut(s) | 53 |
| BspTNI | GGTCTC | 1 cut(s) | 260 |
| BssMI | GATC | 2 cut(s) | 222, 465 |
| Bst4CI | ACNGT | 3 cut(s) | 64, 461, 532 |
| BstAFI | CTTAAG | 1 cut(s) | 53 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 398 |
| BstC8I | GCNNGC | 1 cut(s) | 426 |
| BstDEI | CTNAG | 1 cut(s) | 480 |
| BstF5I | GGATG | 2 cut(s) | 225, 328 |
| BstFNI | CGCG | 1 cut(s) | 164 |
| BstHHI | GCGC | 2 cut(s) | 103, 166 |
| BstKTI | GATC | 2 cut(s) | 225, 468 |
| BstMAI | GTCTC | 4 cut(s) | 27, 70, 260, 382 |
| BstMBI | GATC | 2 cut(s) | 222, 465 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 36, 89, 98, 398, 484 |
| BstSFI | CTRYAG | 1 cut(s) | 441 |
| BstUI | CGCG | 1 cut(s) | 164 |
| BstV1I | GCAGC | 4 cut(s) | 85, 203, 415, 547 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 343 |
| BsuI | GTATCC | 1 cut(s) | 256 |
| BsuRI | GGCC | 1 cut(s) | 487 |
| BtgZI | GCGATG | 1 cut(s) | 54 |
| BtsCI | GGATG | 2 cut(s) | 225, 328 |
| BveI | ACCTGC | 2 cut(s) | 392, 529 |
| Cac8I | GCNNGC | 1 cut(s) | 426 |
| CfoI | GCGC | 2 cut(s) | 103, 166 |
| Cfr13I | GGNCC | 2 cut(s) | 49, 136 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 369, 404 |
| CviAII | CATG | 1 cut(s) | 173 |
| DdeI | CTNAG | 1 cut(s) | 480 |
| DpnI | GATC | 2 cut(s) | 224, 467 |
| DpnII | GATC | 2 cut(s) | 222, 465 |
| EciI | GGCGGA | 1 cut(s) | 45 |
| Eco31I | GGTCTC | 1 cut(s) | 260 |
| Eco47I | GGWCC | 2 cut(s) | 49, 136 |
| EcoO109I | RGGNCCY | 1 cut(s) | 49 |
| Esp3I | CGTCTC | 2 cut(s) | 27, 70 |
| FaeI | CATG | 1 cut(s) | 176 |
| FaiI | YATR | 1 cut(s) | 174 |
| FatI | CATG | 1 cut(s) | 172 |
| FauI | CCCGC | 1 cut(s) | 103 |
| FblI | GTMKAC | 1 cut(s) | 543 |
| Fnu4HI | GCNGC | 4 cut(s) | 99, 192, 429, 536 |
| FokI | GGATG | 2 cut(s) | 212, 335 |
| Fsp4HI | GCNGC | 4 cut(s) | 99, 192, 429, 536 |
| FspBI | CTAG | 1 cut(s) | 117 |
| FspI | TGCGCA | 1 cut(s) | 102 |
| GlaI | GCGC | 2 cut(s) | 102, 165 |
| GluI | GCNGC | 4 cut(s) | 99, 192, 429, 536 |
| GsuI | CTGGAG | 1 cut(s) | 319 |
| HaeIII | GGCC | 1 cut(s) | 487 |
| HhaI | GCGC | 2 cut(s) | 103, 166 |
| Hin1II | CATG | 1 cut(s) | 176 |
| Hin6I | GCGC | 2 cut(s) | 101, 164 |
| HinP1I | GCGC | 2 cut(s) | 101, 164 |
| HindIII | AAGCTT | 1 cut(s) | 126 |
| HinfI | GANTC | 2 cut(s) | 9, 437 |
| Hpy166II | GTNNAC | 2 cut(s) | 60, 544 |
| Hpy188I | TCNGA | 3 cut(s) | 8, 222, 296 |
| Hpy188III | TCNNGA | 3 cut(s) | 336, 434, 449 |
| Hpy8I | GTNNAC | 2 cut(s) | 60, 544 |
| HpyAV | CCTTC | 2 cut(s) | 106, 559 |
| HpyCH4III | ACNGT | 3 cut(s) | 64, 461, 532 |
| HpyCH4V | TGCA | 7 cut(s) | 179, 191, 401, 424, 443, 535, 557 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 36, 89, 98, 398, 484 |
| HpyF3I | CTNAG | 1 cut(s) | 480 |
| Hsp92II | CATG | 1 cut(s) | 176 |
| HspAI | GCGC | 2 cut(s) | 101, 164 |
| Kzo9I | GATC | 2 cut(s) | 222, 465 |
| LmnI | GCTCC | 3 cut(s) | 97, 183, 338 |
| Lsp1109I | GCAGC | 4 cut(s) | 85, 203, 415, 547 |
| LweI | GCATC | 1 cut(s) | 166 |
| MaeI | CTAG | 1 cut(s) | 117 |
| MalI | GATC | 2 cut(s) | 224, 467 |
| MboI | GATC | 2 cut(s) | 222, 465 |
| MfeI | CAATTG | 1 cut(s) | 419 |
| MluCI | AATT | 4 cut(s) | 148, 205, 234, 419 |
| MlyI | GAGTC | 1 cut(s) | 18 |
| MnlI | CCTC | 7 cut(s) | 149, 241, 249, 313, 379, 477, 484 |
| MseI | TTAA | 2 cut(s) | 54, 147 |
| MspA1I | CMGCKG | 2 cut(s) | 98, 194 |
| MspCI | CTTAAG | 1 cut(s) | 53 |
| MunI | CAATTG | 1 cut(s) | 419 |
| Mva1269I | GAATGC | 1 cut(s) | 559 |
| MvnI | CGCG | 1 cut(s) | 164 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 36, 89, 98, 398, 484 |
| NdeII | GATC | 2 cut(s) | 222, 465 |
| NlaIII | CATG | 1 cut(s) | 176 |
| NlaIV | GGNNCC | 1 cut(s) | 348 |
| NsbI | TGCGCA | 1 cut(s) | 102 |
| PctI | GAATGC | 1 cut(s) | 559 |
| PfeI | GAWTC | 1 cut(s) | 437 |
| PkrI | GCNGC | 4 cut(s) | 100, 193, 430, 537 |
| PleI | GAGTC | 1 cut(s) | 17 |
| PpsI | GAGTC | 1 cut(s) | 17 |
| PpuMI | RGGWCCY | 1 cut(s) | 49 |
| Psp5II | RGGWCCY | 1 cut(s) | 49 |
| PspN4I | GGNNCC | 1 cut(s) | 348 |
| PspPI | GGNCC | 2 cut(s) | 49, 136 |
| PspPPI | RGGWCCY | 1 cut(s) | 49 |
| PstI | CTGCAG | 1 cut(s) | 445 |
| PvuII | CAGCTG | 1 cut(s) | 194 |
| SaqAI | TTAA | 2 cut(s) | 54, 147 |
| SatI | GCNGC | 4 cut(s) | 99, 192, 429, 536 |
| Sau3AI | GATC | 2 cut(s) | 222, 465 |
| Sau96I | GGNCC | 2 cut(s) | 49, 136 |
| SchI | GAGTC | 1 cut(s) | 18 |
| SfaNI | GCATC | 1 cut(s) | 166 |
| SfcI | CTRYAG | 1 cut(s) | 441 |
| SinI | GGWCC | 2 cut(s) | 49, 136 |
| SmlI | CTYRAG | 4 cut(s) | 53, 257, 379, 473 |
| SmoI | CTYRAG | 4 cut(s) | 53, 257, 379, 473 |
| Sse9I | AATT | 4 cut(s) | 148, 205, 234, 419 |
| SsiI | CCGC | 4 cut(s) | 30, 96, 162, 494 |
| SspMI | CTAG | 1 cut(s) | 117 |
| TaaI | ACNGT | 3 cut(s) | 64, 461, 532 |
| TaqI | TCGA | 2 cut(s) | 168, 468 |
| TasI | AATT | 4 cut(s) | 148, 205, 234, 419 |
| TfiI | GAWTC | 1 cut(s) | 437 |
| Tru1I | TTAA | 2 cut(s) | 54, 147 |
| Tru9I | TTAA | 2 cut(s) | 54, 147 |
| TseI | GCWGC | 4 cut(s) | 98, 191, 428, 535 |
| TspDTI | ATGAA | 2 cut(s) | 540, 566 |
| Vha464I | CTTAAG | 1 cut(s) | 53 |
| VpaK11BI | GGWCC | 2 cut(s) | 49, 136 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 149 |
| XmiI | GTMKAC | 1 cut(s) | 543 |
| XspI | CTAG | 1 cut(s) | 117 |