No description available
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 22 - 68 | 2.3e-06 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 919 |
| AccB1I | GGYRCC | 2 cut(s) | 372, 607 |
| AciI | CCGC | 3 cut(s) | 347, 413, 489 |
| AclI | AACGTT | 1 cut(s) | 166 |
| AclWI | GGATC | 2 cut(s) | 201, 859 |
| AcsI | RAATTY | 4 cut(s) | 24, 126, 295, 835 |
| AcuI | CTGAAG | 2 cut(s) | 407, 812 |
| AcyI | GRCGYC | 2 cut(s) | 373, 916 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 269, 481, 482, 1005 |
| AgsI | TTSAA | 6 cut(s) | 253, 308, 404, 676, 757, 889 |
| AjnI | CCWGG | 1 cut(s) | 1004 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 86, 118, 323, 355, 975, 1007 |
| Alw26I | GTCTC | 1 cut(s) | 1014 |
| AlwI | GGATC | 2 cut(s) | 201, 859 |
| Ama87I | CYCGRG | 2 cut(s) | 481, 960 |
| AoxI | GGCC | 1 cut(s) | 963 |
| ApeKI | GCWGC | 5 cut(s) | 97, 694, 697, 734, 893 |
| ApoI | RAATTY | 4 cut(s) | 24, 126, 295, 835 |
| AspLEI | GCGC | 1 cut(s) | 375 |
| AspS9I | GGNCC | 2 cut(s) | 485, 963 |
| AsuC2I | CCSGG | 1 cut(s) | 231 |
| AsuHPI | GGTGA | 2 cut(s) | 602, 994 |
| AsuII | TTCGAA | 1 cut(s) | 929 |
| AvaI | CYCGRG | 2 cut(s) | 481, 960 |
| AvaII | GGWCC | 1 cut(s) | 485 |
| BaeGI | GKGCMC | 2 cut(s) | 467, 955 |
| BanI | GGYRCC | 2 cut(s) | 372, 607 |
| BbsI | GAAGAC | 1 cut(s) | 990 |
| BbvI | GCAGC | 5 cut(s) | 84, 706, 709, 746, 880 |
| BccI | CCATC | 3 cut(s) | 40, 367, 673 |
| BciT130I | CCWGG | 1 cut(s) | 1006 |
| BcnI | CCSGG | 1 cut(s) | 231 |
| BcoDI | GTCTC | 1 cut(s) | 1014 |
| BfaI | CTAG | 6 cut(s) | 369, 477, 849, 870, 948, 972 |
| BfmI | CTRYAG | 1 cut(s) | 423 |
| BfoI | RGCGCY | 1 cut(s) | 376 |
| BglII | AGATCT | 1 cut(s) | 827 |
| BisI | GCNGC | 5 cut(s) | 98, 695, 698, 735, 894 |
| BlsI | GCNGC | 5 cut(s) | 99, 696, 699, 736, 895 |
| Bme1390I | CCNGG | 2 cut(s) | 231, 1006 |
| Bme18I | GGWCC | 1 cut(s) | 485 |
| BmeT110I | CYCGRG | 2 cut(s) | 481, 960 |
| BmgT120I | GGNCC | 2 cut(s) | 485, 963 |
| BmiI | GGNNCC | 5 cut(s) | 374, 486, 487, 609, 997 |
| BmrFI | CCNGG | 2 cut(s) | 231, 1006 |
| BmrI | ACTGGG | 2 cut(s) | 284, 716 |
| BmsI | GCATC | 3 cut(s) | 161, 543, 786 |
| BmuI | ACTGGG | 2 cut(s) | 284, 716 |
| BpiI | GAAGAC | 1 cut(s) | 990 |
| Bpu14I | TTCGAA | 1 cut(s) | 929 |
| BpuMI | CCSGG | 1 cut(s) | 231 |
| BsaHI | GRCGYC | 2 cut(s) | 373, 916 |
| BsaI | GGTCTC | 1 cut(s) | 1014 |
| BsaJI | CCNNGG | 1 cut(s) | 645 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 994, 1024 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 269, 481, 482, 1005 |
| Bse1I | ACTGG | 2 cut(s) | 279, 722 |
| Bse3DI | GCAATG | 2 cut(s) | 650, 862 |
| BseBI | CCWGG | 1 cut(s) | 1006 |
| BseDI | CCNNGG | 1 cut(s) | 645 |
| BseGI | GGATG | 2 cut(s) | 112, 529 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 269, 481, 482, 1005 |
| BseMI | GCAATG | 2 cut(s) | 650, 862 |
| BseMII | CTCAG | 1 cut(s) | 990 |
| BseNI | ACTGG | 2 cut(s) | 279, 722 |
| BseSI | GKGCMC | 2 cut(s) | 467, 955 |
| BseXI | GCAGC | 5 cut(s) | 84, 706, 709, 746, 880 |
| BshFI | GGCC | 1 cut(s) | 965 |
| BshNI | GGYRCC | 2 cut(s) | 372, 607 |
| BsiHKCI | CYCGRG | 2 cut(s) | 481, 960 |
| BsiSI | CCGG | 1 cut(s) | 230 |
| BslFI | GGGAC | 2 cut(s) | 498, 703 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 269, 481, 482, 1005 |
| BsmAI | GTCTC | 1 cut(s) | 1014 |
| BsmFI | GGGAC | 2 cut(s) | 498, 703 |
| BsnI | GGCC | 1 cut(s) | 965 |
| Bso31I | GGTCTC | 1 cut(s) | 1014 |
| BsoBI | CYCGRG | 2 cut(s) | 481, 960 |
| Bsp119I | TTCGAA | 1 cut(s) | 929 |
| Bsp1286I | GDGCHC | 2 cut(s) | 467, 955 |
| Bsp143I | GATC | 3 cut(s) | 193, 827, 864 |
| BspACI | CCGC | 3 cut(s) | 347, 413, 489 |
| BspANI | GGCC | 1 cut(s) | 965 |
| BspCNI | CTCAG | 1 cut(s) | 989 |
| BspHI | TCATGA | 1 cut(s) | 61 |
| BspLI | GGNNCC | 5 cut(s) | 374, 486, 487, 609, 997 |
| BspMAI | CTGCAG | 1 cut(s) | 427 |
| BspPI | GGATC | 2 cut(s) | 201, 859 |
| BspT104I | TTCGAA | 1 cut(s) | 929 |
| BspT107I | GGYRCC | 2 cut(s) | 372, 607 |
| BspTNI | GGTCTC | 1 cut(s) | 1014 |
| BsrDI | GCAATG | 2 cut(s) | 650, 862 |
| BsrI | ACTGG | 2 cut(s) | 279, 722 |
| BssECI | CCNNGG | 1 cut(s) | 645 |
| BssMI | GATC | 3 cut(s) | 193, 827, 864 |
| BssNI | GRCGYC | 2 cut(s) | 373, 916 |
| BssT1I | CCWWGG | 1 cut(s) | 645 |
| Bst2UI | CCWGG | 1 cut(s) | 1006 |
| Bst6I | CTCTTC | 1 cut(s) | 683 |
| BstACI | GRCGYC | 2 cut(s) | 373, 916 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 471 |
| BstBI | TTCGAA | 1 cut(s) | 929 |
| BstC8I | GCNNGC | 1 cut(s) | 879 |
| BstDEI | CTNAG | 2 cut(s) | 434, 976 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 267, 1003 |
| BstF5I | GGATG | 2 cut(s) | 112, 529 |
| BstH2I | RGCGCY | 1 cut(s) | 376 |
| BstHHI | GCGC | 1 cut(s) | 375 |
| BstKTI | GATC | 3 cut(s) | 196, 830, 867 |
| BstMAI | GTCTC | 1 cut(s) | 1014 |
| BstMBI | GATC | 3 cut(s) | 193, 827, 864 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 471, 796 |
| BstNI | CCWGG | 1 cut(s) | 1006 |
| BstNSI | RCATGY | 2 cut(s) | 449, 881 |
| BstSCI | CCNGG | 2 cut(s) | 229, 1004 |
| BstSFI | CTRYAG | 1 cut(s) | 423 |
| BstSLI | GKGCMC | 2 cut(s) | 467, 955 |
| BstV1I | GCAGC | 5 cut(s) | 84, 706, 709, 746, 880 |
| BstV2I | GAAGAC | 1 cut(s) | 990 |
| BstX2I | RGATCY | 1 cut(s) | 827 |
| BstYI | RGATCY | 1 cut(s) | 827 |
| BsuRI | GGCC | 1 cut(s) | 965 |
| BtsCI | GGATG | 2 cut(s) | 112, 529 |
| BtsI | GCAGTG | 1 cut(s) | 740 |
| BtsIMutI | CAGTG | 2 cut(s) | 740, 984 |
| Cac8I | GCNNGC | 1 cut(s) | 879 |
| CciI | TCATGA | 1 cut(s) | 61 |
| CfoI | GCGC | 1 cut(s) | 375 |
| Cfr13I | GGNCC | 2 cut(s) | 485, 963 |
| CsiI | ACCWGGT | 1 cut(s) | 1004 |
| CviAII | CATG | 6 cut(s) | 62, 148, 185, 286, 446, 878 |
| DdeI | CTNAG | 2 cut(s) | 434, 976 |
| DinI | GGCGCC | 1 cut(s) | 374 |
| DpnI | GATC | 3 cut(s) | 195, 829, 866 |
| DpnII | GATC | 3 cut(s) | 193, 827, 864 |
| DraI | TTTAAA | 1 cut(s) | 783 |
| Eam1104I | CTCTTC | 1 cut(s) | 683 |
| EarI | CTCTTC | 1 cut(s) | 683 |
| Eco130I | CCWWGG | 1 cut(s) | 645 |
| Eco31I | GGTCTC | 1 cut(s) | 1014 |
| Eco47I | GGWCC | 1 cut(s) | 485 |
| Eco57I | CTGAAG | 2 cut(s) | 407, 812 |
| Eco88I | CYCGRG | 2 cut(s) | 481, 960 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 267, 1003 |
| EcoO109I | RGGNCCY | 1 cut(s) | 485 |
| EcoRII | CCWGG | 1 cut(s) | 1004 |
| EcoT14I | CCWWGG | 1 cut(s) | 645 |
| EgeI | GGCGCC | 1 cut(s) | 374 |
| EheI | GGCGCC | 1 cut(s) | 374 |
| ErhI | CCWWGG | 1 cut(s) | 645 |
| FaeI | CATG | 6 cut(s) | 65, 151, 188, 289, 449, 881 |
| FaiI | YATR | 9 cut(s) | 20, 63, 141, 149, 186, 287, 447, 512, 879 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 749, 781 |
| FaqI | GGGAC | 2 cut(s) | 498, 703 |
| FatI | CATG | 6 cut(s) | 61, 147, 184, 285, 445, 877 |
| FauI | CCCGC | 2 cut(s) | 340, 496 |
| Fnu4HI | GCNGC | 5 cut(s) | 98, 695, 698, 735, 894 |
| FokI | GGATG | 2 cut(s) | 119, 536 |
| Fsp4HI | GCNGC | 5 cut(s) | 98, 695, 698, 735, 894 |
| FspBI | CTAG | 6 cut(s) | 369, 477, 849, 870, 948, 972 |
| GlaI | GCGC | 1 cut(s) | 374 |
| GluI | GCNGC | 5 cut(s) | 98, 695, 698, 735, 894 |
| HaeII | RGCGCY | 1 cut(s) | 376 |
| HaeIII | GGCC | 1 cut(s) | 965 |
| HapII | CCGG | 1 cut(s) | 230 |
| HhaI | GCGC | 1 cut(s) | 375 |
| Hin1I | GRCGYC | 2 cut(s) | 373, 916 |
| Hin1II | CATG | 6 cut(s) | 65, 151, 188, 289, 449, 881 |
| Hin6I | GCGC | 1 cut(s) | 373 |
| HinP1I | GCGC | 1 cut(s) | 373 |
| HinfI | GANTC | 7 cut(s) | 315, 355, 416, 514, 545, 572, 599 |
| HpaII | CCGG | 1 cut(s) | 230 |
| HphI | GGTGA | 2 cut(s) | 602, 994 |
| Hpy166II | GTNNAC | 1 cut(s) | 164 |
| Hpy188I | TCNGA | 6 cut(s) | 87, 177, 387, 834, 900, 1024 |
| Hpy188III | TCNNGA | 6 cut(s) | 62, 404, 440, 483, 518, 685 |
| Hpy8I | GTNNAC | 1 cut(s) | 164 |
| HpyAV | CCTTC | 5 cut(s) | 115, 255, 454, 1009, 1029 |
| HpyCH4IV | ACGT | 2 cut(s) | 166, 916 |
| HpyCH4V | TGCA | 6 cut(s) | 100, 238, 425, 583, 734, 824 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 471, 796 |
| HpyF3I | CTNAG | 2 cut(s) | 434, 976 |
| HpySE526I | ACGT | 2 cut(s) | 166, 916 |
| Hsp92I | GRCGYC | 2 cut(s) | 373, 916 |
| Hsp92II | CATG | 6 cut(s) | 65, 151, 188, 289, 449, 881 |
| HspAI | GCGC | 1 cut(s) | 373 |
| KasI | GGCGCC | 1 cut(s) | 372 |
| KflI | GGGWCCC | 1 cut(s) | 485 |
| Kzo9I | GATC | 3 cut(s) | 193, 827, 864 |
| LmnI | GCTCC | 4 cut(s) | 232, 667, 901, 1001 |
| LpnPI | CCDG | 9 cut(s) | 243, 260, 276, 411, 425, 573, 735, 991, 1018 |
| Lsp1109I | GCAGC | 5 cut(s) | 84, 706, 709, 746, 880 |
| LweI | GCATC | 3 cut(s) | 161, 543, 786 |
| MabI | ACCWGGT | 1 cut(s) | 1004 |
| MaeI | CTAG | 6 cut(s) | 369, 477, 849, 870, 948, 972 |
| MaeII | ACGT | 2 cut(s) | 166, 916 |
| MaeIII | GTNAC | 1 cut(s) | 256 |
| MalI | GATC | 3 cut(s) | 195, 829, 866 |
| MboI | GATC | 3 cut(s) | 193, 827, 864 |
| MfeI | CAATTG | 1 cut(s) | 101 |
| MflI | RGATCY | 1 cut(s) | 827 |
| MhlI | GDGCHC | 2 cut(s) | 467, 955 |
| MluCI | AATT | 9 cut(s) | 24, 101, 126, 156, 295, 378, 395, 803, 835 |
| Mly113I | GGCGCC | 1 cut(s) | 373 |
| MlyI | GAGTC | 3 cut(s) | 309, 349, 410 |
| MnlI | CCTC | 9 cut(s) | 184, 263, 305, 514, 666, 684, 757, 905, 955 |
| MseI | TTAA | 2 cut(s) | 726, 782 |
| MslI | CAYNNNNRTG | 1 cut(s) | 450 |
| MspI | CCGG | 1 cut(s) | 230 |
| MspR9I | CCNGG | 2 cut(s) | 231, 1006 |
| MunI | CAATTG | 1 cut(s) | 101 |
| MvaI | CCWGG | 1 cut(s) | 1006 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 471, 796 |
| NarI | GGCGCC | 1 cut(s) | 373 |
| NciI | CCSGG | 1 cut(s) | 231 |
| NdeII | GATC | 3 cut(s) | 193, 827, 864 |
| NlaIII | CATG | 6 cut(s) | 65, 151, 188, 289, 449, 881 |
| NlaIV | GGNNCC | 5 cut(s) | 374, 486, 487, 609, 997 |
| NspI | RCATGY | 2 cut(s) | 449, 881 |
| NspV | TTCGAA | 1 cut(s) | 929 |
| PaeI | GCATGC | 1 cut(s) | 881 |
| PagI | TCATGA | 1 cut(s) | 61 |
| PfeI | GAWTC | 4 cut(s) | 514, 545, 572, 599 |
| PkrI | GCNGC | 5 cut(s) | 99, 696, 699, 736, 895 |
| PleI | GAGTC | 3 cut(s) | 309, 349, 410 |
| PluTI | GGCGCC | 1 cut(s) | 376 |
| PpsI | GAGTC | 3 cut(s) | 309, 349, 410 |
| PpuMI | RGGWCCY | 1 cut(s) | 485 |
| Psp1406I | AACGTT | 1 cut(s) | 166 |
| Psp5II | RGGWCCY | 1 cut(s) | 485 |
| Psp6I | CCWGG | 1 cut(s) | 1004 |
| PspGI | CCWGG | 1 cut(s) | 1004 |
| PspN4I | GGNNCC | 5 cut(s) | 374, 486, 487, 609, 997 |
| PspPI | GGNCC | 2 cut(s) | 485, 963 |
| PspPPI | RGGWCCY | 1 cut(s) | 485 |
| PstI | CTGCAG | 1 cut(s) | 427 |
| PsuI | RGATCY | 1 cut(s) | 827 |
| RseI | CAYNNNNRTG | 1 cut(s) | 450 |
| SaqAI | TTAA | 2 cut(s) | 726, 782 |
| SatI | GCNGC | 5 cut(s) | 98, 695, 698, 735, 894 |
| Sau3AI | GATC | 3 cut(s) | 193, 827, 864 |
| Sau96I | GGNCC | 2 cut(s) | 485, 963 |
| SchI | GAGTC | 3 cut(s) | 309, 349, 410 |
| ScrFI | CCNGG | 2 cut(s) | 231, 1006 |
| SduI | GDGCHC | 2 cut(s) | 467, 955 |
| SexAI | ACCWGGT | 1 cut(s) | 1004 |
| SfaNI | GCATC | 3 cut(s) | 161, 543, 786 |
| SfcI | CTRYAG | 1 cut(s) | 423 |
| SfoI | GGCGCC | 1 cut(s) | 374 |
| SfuI | TTCGAA | 1 cut(s) | 929 |
| SinI | GGWCC | 1 cut(s) | 485 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 450 |
| SphI | GCATGC | 1 cut(s) | 881 |
| Sse9I | AATT | 9 cut(s) | 24, 101, 126, 156, 295, 378, 395, 803, 835 |
| SsiI | CCGC | 3 cut(s) | 347, 413, 489 |
| SspDI | GGCGCC | 1 cut(s) | 372 |
| SspMI | CTAG | 6 cut(s) | 369, 477, 849, 870, 948, 972 |
| StyD4I | CCNGG | 2 cut(s) | 229, 1004 |
| StyI | CCWWGG | 1 cut(s) | 645 |
| TaiI | ACGT | 2 cut(s) | 169, 919 |
| TaqI | TCGA | 2 cut(s) | 812, 929 |
| TasI | AATT | 9 cut(s) | 24, 101, 126, 156, 295, 378, 395, 803, 835 |
| TfiI | GAWTC | 4 cut(s) | 514, 545, 572, 599 |
| Tru1I | TTAA | 2 cut(s) | 726, 782 |
| Tru9I | TTAA | 2 cut(s) | 726, 782 |
| TscAI | CASTG | 2 cut(s) | 747, 984 |
| TseI | GCWGC | 5 cut(s) | 97, 694, 697, 734, 893 |
| TspDTI | ATGAA | 4 cut(s) | 20, 156, 540, 579 |
| TspRI | CASTG | 2 cut(s) | 747, 984 |
| VpaK11BI | GGWCC | 1 cut(s) | 485 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 267, 1003 |
| XapI | RAATTY | 4 cut(s) | 24, 126, 295, 835 |
| XceI | RCATGY | 2 cut(s) | 449, 881 |
| XspI | CTAG | 6 cut(s) | 369, 477, 849, 870, 948, 972 |
| ZraI | GACGTC | 1 cut(s) | 917 |