transcription factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 17 |
| Acc36I | ACCTGC | 1 cut(s) | 491 |
| AccI | GTMKAC | 1 cut(s) | 21 |
| AciI | CCGC | 4 cut(s) | 231, 234, 492, 748 |
| AclWI | GGATC | 3 cut(s) | 220, 309, 414 |
| AcoI | YGGCCR | 2 cut(s) | 132, 489 |
| AcsI | RAATTY | 1 cut(s) | 347 |
| AcyI | GRCGYC | 1 cut(s) | 240 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 403 |
| AflII | CTTAAG | 1 cut(s) | 605 |
| AgsI | TTSAA | 2 cut(s) | 323, 649 |
| AjnI | CCWGG | 1 cut(s) | 763 |
| AluBI | AGCT | 3 cut(s) | 583, 610, 757 |
| AluI | AGCT | 3 cut(s) | 583, 610, 757 |
| Alw26I | GTCTC | 1 cut(s) | 247 |
| AlwI | GGATC | 3 cut(s) | 220, 309, 414 |
| AoxI | GGCC | 3 cut(s) | 109, 132, 489 |
| ApeKI | GCWGC | 5 cut(s) | 104, 311, 666, 713, 757 |
| ApoI | RAATTY | 1 cut(s) | 347 |
| AseI | ATTAAT | 1 cut(s) | 27 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 584 |
| AsuC2I | CCSGG | 1 cut(s) | 618 |
| AsuHPI | GGTGA | 1 cut(s) | 445 |
| BbvI | GCAGC | 5 cut(s) | 91, 323, 653, 700, 744 |
| BccI | CCATC | 1 cut(s) | 485 |
| BceAI | ACGGC | 1 cut(s) | 119 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 316, 350, 557, 591 |
| BciT130I | CCWGG | 1 cut(s) | 765 |
| BclI | TGATCA | 3 cut(s) | 165, 520, 726 |
| BcnI | CCSGG | 1 cut(s) | 618 |
| BcoDI | GTCTC | 1 cut(s) | 247 |
| BfmI | CTRYAG | 2 cut(s) | 105, 309 |
| BfrI | CTTAAG | 1 cut(s) | 605 |
| BfuAI | ACCTGC | 1 cut(s) | 491 |
| BisI | GCNGC | 7 cut(s) | 105, 234, 312, 492, 667, 714, 758 |
| BlpI | GCTNAGC | 1 cut(s) | 564 |
| BlsI | GCNGC | 7 cut(s) | 106, 235, 313, 493, 668, 715, 759 |
| Bme1390I | CCNGG | 2 cut(s) | 618, 765 |
| BmrFI | CCNGG | 2 cut(s) | 618, 765 |
| BmsI | GCATC | 1 cut(s) | 199 |
| BpmI | CTGGAG | 1 cut(s) | 482 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 564 |
| BpuEI | CTTGAG | 2 cut(s) | 533, 578 |
| BpuMI | CCSGG | 1 cut(s) | 618 |
| Bsa29I | ATCGAT | 1 cut(s) | 304 |
| BsaHI | GRCGYC | 1 cut(s) | 240 |
| BsaJI | CCNNGG | 3 cut(s) | 112, 743, 764 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 403 |
| Bse118I | RCCGGY | 1 cut(s) | 236 |
| Bse1I | ACTGG | 2 cut(s) | 21, 779 |
| BseBI | CCWGG | 1 cut(s) | 765 |
| BseCI | ATCGAT | 1 cut(s) | 304 |
| BseDI | CCNNGG | 3 cut(s) | 112, 743, 764 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 403 |
| BseMII | CTCAG | 3 cut(s) | 290, 412, 555 |
| BseNI | ACTGG | 2 cut(s) | 21, 779 |
| BseXI | GCAGC | 5 cut(s) | 91, 323, 653, 700, 744 |
| BsgI | GTGCAG | 1 cut(s) | 699 |
| BshFI | GGCC | 3 cut(s) | 111, 134, 491 |
| BshVI | ATCGAT | 1 cut(s) | 304 |
| BsiSI | CCGG | 2 cut(s) | 237, 617 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 403 |
| BsmAI | GTCTC | 1 cut(s) | 247 |
| BsmBI | CGTCTC | 1 cut(s) | 247 |
| BsnI | GGCC | 3 cut(s) | 111, 134, 491 |
| Bsp143I | GATC | 8 cut(s) | 165, 212, 301, 305, 406, 520, 624, 726 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 564 |
| BspACI | CCGC | 4 cut(s) | 231, 234, 492, 748 |
| BspANI | GGCC | 3 cut(s) | 111, 134, 491 |
| BspCNI | CTCAG | 3 cut(s) | 289, 411, 556 |
| BspDI | ATCGAT | 1 cut(s) | 304 |
| BspHI | TCATGA | 1 cut(s) | 480 |
| BspMAI | CTGCAG | 2 cut(s) | 109, 313 |
| BspMI | ACCTGC | 1 cut(s) | 491 |
| BspPI | GGATC | 3 cut(s) | 220, 309, 414 |
| BspTI | CTTAAG | 1 cut(s) | 605 |
| BsrFI | RCCGGY | 1 cut(s) | 236 |
| BsrI | ACTGG | 2 cut(s) | 21, 779 |
| BssAI | RCCGGY | 1 cut(s) | 236 |
| BssECI | CCNNGG | 3 cut(s) | 112, 743, 764 |
| BssMI | GATC | 8 cut(s) | 165, 212, 301, 305, 406, 520, 624, 726 |
| BssNI | GRCGYC | 1 cut(s) | 240 |
| BssT1I | CCWWGG | 2 cut(s) | 112, 743 |
| Bst2UI | CCWGG | 1 cut(s) | 765 |
| Bst4CI | ACNGT | 1 cut(s) | 82 |
| BstACI | GRCGYC | 1 cut(s) | 240 |
| BstAFI | CTTAAG | 1 cut(s) | 605 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 675 |
| BstC8I | GCNNGC | 4 cut(s) | 109, 238, 612, 676 |
| BstDEI | CTNAG | 3 cut(s) | 276, 398, 564 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 401 |
| BstKTI | GATC | 8 cut(s) | 168, 215, 304, 308, 409, 523, 627, 729 |
| BstMAI | GTCTC | 1 cut(s) | 247 |
| BstMBI | GATC | 8 cut(s) | 165, 212, 301, 305, 406, 520, 624, 726 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 497, 675, 754 |
| BstNI | CCWGG | 1 cut(s) | 765 |
| BstNSI | RCATGY | 1 cut(s) | 678 |
| BstSCI | CCNGG | 2 cut(s) | 616, 763 |
| BstSFI | CTRYAG | 2 cut(s) | 105, 309 |
| BstV1I | GCAGC | 5 cut(s) | 91, 323, 653, 700, 744 |
| BstX2I | RGATCY | 1 cut(s) | 212 |
| BstYI | RGATCY | 1 cut(s) | 212 |
| Bsu15I | ATCGAT | 1 cut(s) | 304 |
| BsuRI | GGCC | 3 cut(s) | 111, 134, 491 |
| BsuTUI | ATCGAT | 1 cut(s) | 304 |
| BtsIMutI | CAGTG | 2 cut(s) | 284, 716 |
| BveI | ACCTGC | 1 cut(s) | 491 |
| Cac8I | GCNNGC | 4 cut(s) | 109, 238, 612, 676 |
| CciI | TCATGA | 1 cut(s) | 480 |
| Cfr10I | RCCGGY | 1 cut(s) | 236 |
| ClaI | ATCGAT | 1 cut(s) | 304 |
| CseI | GACGC | 4 cut(s) | 100, 229, 303, 466 |
| CviAII | CATG | 8 cut(s) | 130, 263, 481, 560, 569, 675, 692, 730 |
| CviJI | RGCY | 6 cut(s) | 111, 134, 491, 583, 610, 757 |
| CviKI_1 | RGCY | 6 cut(s) | 111, 134, 491, 583, 610, 757 |
| DdeI | CTNAG | 3 cut(s) | 276, 398, 564 |
| DpnI | GATC | 8 cut(s) | 167, 214, 303, 307, 408, 522, 626, 728 |
| DpnII | GATC | 8 cut(s) | 165, 212, 301, 305, 406, 520, 624, 726 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 17 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 17 |
| EaeI | YGGCCR | 2 cut(s) | 132, 489 |
| EciI | GGCGGA | 1 cut(s) | 763 |
| Eco130I | CCWWGG | 2 cut(s) | 112, 743 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 401 |
| EcoRII | CCWGG | 1 cut(s) | 763 |
| EcoT14I | CCWWGG | 2 cut(s) | 112, 743 |
| EcoT22I | ATGCAT | 1 cut(s) | 192 |
| ErhI | CCWWGG | 2 cut(s) | 112, 743 |
| Esp3I | CGTCTC | 1 cut(s) | 247 |
| FaeI | CATG | 8 cut(s) | 133, 266, 484, 563, 572, 678, 695, 733 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 191, 223 |
| FatI | CATG | 8 cut(s) | 129, 262, 480, 559, 568, 674, 691, 729 |
| FbaI | TGATCA | 3 cut(s) | 165, 520, 726 |
| FblI | GTMKAC | 1 cut(s) | 21 |
| Fnu4HI | GCNGC | 7 cut(s) | 105, 234, 312, 492, 667, 714, 758 |
| Fsp4HI | GCNGC | 7 cut(s) | 105, 234, 312, 492, 667, 714, 758 |
| GluI | GCNGC | 7 cut(s) | 105, 234, 312, 492, 667, 714, 758 |
| GsuI | CTGGAG | 1 cut(s) | 482 |
| HaeIII | GGCC | 3 cut(s) | 111, 134, 491 |
| HapII | CCGG | 2 cut(s) | 237, 617 |
| HgaI | GACGC | 4 cut(s) | 100, 229, 303, 466 |
| Hin1I | GRCGYC | 1 cut(s) | 240 |
| Hin1II | CATG | 8 cut(s) | 133, 266, 484, 563, 572, 678, 695, 733 |
| HincII | GTYRAC | 1 cut(s) | 22 |
| HindII | GTYRAC | 1 cut(s) | 22 |
| HindIII | AAGCTT | 1 cut(s) | 608 |
| HinfI | GANTC | 4 cut(s) | 56, 438, 652, 721 |
| HpaII | CCGG | 2 cut(s) | 237, 617 |
| HphI | GGTGA | 1 cut(s) | 445 |
| Hpy166II | GTNNAC | 1 cut(s) | 22 |
| Hpy188I | TCNGA | 7 cut(s) | 61, 217, 401, 411, 525, 579, 726 |
| Hpy188III | TCNNGA | 5 cut(s) | 299, 359, 481, 595, 649 |
| Hpy8I | GTNNAC | 1 cut(s) | 22 |
| Hpy99I | CGWCG | 1 cut(s) | 460 |
| HpyAV | CCTTC | 1 cut(s) | 649 |
| HpyCH4III | ACNGT | 1 cut(s) | 82 |
| HpyCH4V | TGCA | 6 cut(s) | 107, 190, 282, 311, 669, 716 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 497, 675, 754 |
| HpyF3I | CTNAG | 3 cut(s) | 276, 398, 564 |
| Hsp92I | GRCGYC | 1 cut(s) | 240 |
| Hsp92II | CATG | 8 cut(s) | 133, 266, 484, 563, 572, 678, 695, 733 |
| KroI | GCCGGC | 1 cut(s) | 236 |
| KroNI | GCCGGC | 1 cut(s) | 238 |
| Ksp22I | TGATCA | 3 cut(s) | 165, 520, 726 |
| Kzo9I | GATC | 8 cut(s) | 165, 212, 301, 305, 406, 520, 624, 726 |
| LmnI | GCTCC | 2 cut(s) | 361, 619 |
| Lsp1109I | GCAGC | 5 cut(s) | 91, 323, 653, 700, 744 |
| LweI | GCATC | 1 cut(s) | 199 |
| MaeIII | GTNAC | 2 cut(s) | 49, 315 |
| MalI | GATC | 8 cut(s) | 167, 214, 303, 307, 408, 522, 626, 728 |
| MboI | GATC | 8 cut(s) | 165, 212, 301, 305, 406, 520, 624, 726 |
| MboII | GAAGA | 5 cut(s) | 185, 185, 634, 637, 641 |
| MflI | RGATCY | 1 cut(s) | 212 |
| MluCI | AATT | 3 cut(s) | 39, 328, 347 |
| MlyI | GAGTC | 2 cut(s) | 50, 715 |
| MnlI | CCTC | 5 cut(s) | 285, 407, 457, 602, 749 |
| Mph1103I | ATGCAT | 1 cut(s) | 192 |
| MreI | CGCCGGCG | 1 cut(s) | 236 |
| MroNI | GCCGGC | 1 cut(s) | 236 |
| MroXI | GAANNNNTTC | 1 cut(s) | 584 |
| MseI | TTAA | 4 cut(s) | 27, 351, 552, 606 |
| MslI | CAYNNNNRTG | 2 cut(s) | 134, 485 |
| MspCI | CTTAAG | 1 cut(s) | 605 |
| MspI | CCGG | 2 cut(s) | 237, 617 |
| MspR9I | CCNGG | 2 cut(s) | 618, 765 |
| MvaI | CCWGG | 1 cut(s) | 765 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 497, 675, 754 |
| NaeI | GCCGGC | 1 cut(s) | 238 |
| NciI | CCSGG | 1 cut(s) | 618 |
| NdeII | GATC | 8 cut(s) | 165, 212, 301, 305, 406, 520, 624, 726 |
| NgoMIV | GCCGGC | 1 cut(s) | 236 |
| NlaIII | CATG | 8 cut(s) | 133, 266, 484, 563, 572, 678, 695, 733 |
| NmuCI | GTSAC | 2 cut(s) | 49, 315 |
| NsiI | ATGCAT | 1 cut(s) | 192 |
| NspI | RCATGY | 1 cut(s) | 678 |
| PaeI | GCATGC | 1 cut(s) | 678 |
| PagI | TCATGA | 1 cut(s) | 480 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 18 |
| PdiI | GCCGGC | 1 cut(s) | 238 |
| PdmI | GAANNNNTTC | 1 cut(s) | 584 |
| PfeI | GAWTC | 2 cut(s) | 438, 652 |
| PflFI | GACNNNGTC | 1 cut(s) | 94 |
| PfoI | TCCNGGA | 1 cut(s) | 616 |
| PkrI | GCNGC | 7 cut(s) | 106, 235, 313, 493, 668, 715, 759 |
| PleI | GAGTC | 2 cut(s) | 50, 715 |
| PpsI | GAGTC | 2 cut(s) | 50, 715 |
| PshBI | ATTAAT | 1 cut(s) | 27 |
| Psp6I | CCWGG | 1 cut(s) | 763 |
| PspGI | CCWGG | 1 cut(s) | 763 |
| PstI | CTGCAG | 2 cut(s) | 109, 313 |
| PsuI | RGATCY | 1 cut(s) | 212 |
| PsyI | GACNNNGTC | 1 cut(s) | 94 |
| RseI | CAYNNNNRTG | 2 cut(s) | 134, 485 |
| SalI | GTCGAC | 1 cut(s) | 20 |
| SaqAI | TTAA | 4 cut(s) | 27, 351, 552, 606 |
| SatI | GCNGC | 7 cut(s) | 105, 234, 312, 492, 667, 714, 758 |
| Sau3AI | GATC | 8 cut(s) | 165, 212, 301, 305, 406, 520, 624, 726 |
| SchI | GAGTC | 2 cut(s) | 50, 715 |
| ScrFI | CCNGG | 2 cut(s) | 618, 765 |
| SetI | ASST | 8 cut(s) | 357, 399, 468, 505, 585, 612, 741, 759 |
| SfaNI | GCATC | 1 cut(s) | 199 |
| SfcI | CTRYAG | 2 cut(s) | 105, 309 |
| SgrAI | CRCCGGYG | 1 cut(s) | 236 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 134, 485 |
| SmlI | CTYRAG | 3 cut(s) | 512, 593, 605 |
| SmoI | CTYRAG | 3 cut(s) | 512, 593, 605 |
| SphI | GCATGC | 1 cut(s) | 678 |
| Sse9I | AATT | 3 cut(s) | 39, 328, 347 |
| SsiI | CCGC | 4 cut(s) | 231, 234, 492, 748 |
| StyD4I | CCNGG | 2 cut(s) | 616, 763 |
| StyI | CCWWGG | 2 cut(s) | 112, 743 |
| TaaI | ACNGT | 1 cut(s) | 82 |
| TaqI | TCGA | 3 cut(s) | 21, 304, 627 |
| TasI | AATT | 3 cut(s) | 39, 328, 347 |
| TauI | GCSGC | 2 cut(s) | 236, 494 |
| TfiI | GAWTC | 2 cut(s) | 438, 652 |
| Tru1I | TTAA | 4 cut(s) | 27, 351, 552, 606 |
| Tru9I | TTAA | 4 cut(s) | 27, 351, 552, 606 |
| TscAI | CASTG | 2 cut(s) | 284, 723 |
| TseFI | GTSAC | 2 cut(s) | 49, 315 |
| TseI | GCWGC | 5 cut(s) | 104, 311, 666, 713, 757 |
| Tsp45I | GTSAC | 2 cut(s) | 49, 315 |
| TspDTI | ATGAA | 4 cut(s) | 118, 257, 497, 548 |
| TspGWI | ACGGA | 1 cut(s) | 27 |
| TspRI | CASTG | 2 cut(s) | 284, 723 |
| Tth111I | GACNNNGTC | 1 cut(s) | 94 |
| Vha464I | CTTAAG | 1 cut(s) | 605 |
| VspI | ATTAAT | 1 cut(s) | 27 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 401 |
| XapI | RAATTY | 1 cut(s) | 347 |
| XceI | RCATGY | 1 cut(s) | 678 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 484, 771 |
| XmiI | GTMKAC | 1 cut(s) | 21 |
| XmnI | GAANNNNTTC | 1 cut(s) | 584 |
| Zsp2I | ATGCAT | 1 cut(s) | 192 |