ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Med22 | PF06179 | 42 - 140 | 2.3e-27 | Surfeit locus protein 5 subunit 22 of Mediator complex |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 463 |
| AccB1I | GGYRCC | 1 cut(s) | 463 |
| AccI | GTMKAC | 1 cut(s) | 153 |
| AciI | CCGC | 5 cut(s) | 30, 80, 83, 92, 388 |
| AfaI | GTAC | 1 cut(s) | 465 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 48, 60, 66, 343 |
| AflII | CTTAAG | 1 cut(s) | 275 |
| AgsI | TTSAA | 2 cut(s) | 295, 440 |
| AjnI | CCWGG | 1 cut(s) | 182 |
| AluBI | AGCT | 6 cut(s) | 98, 165, 221, 398, 419, 436 |
| AluI | AGCT | 6 cut(s) | 98, 165, 221, 398, 419, 436 |
| AoxI | GGCC | 3 cut(s) | 57, 68, 372 |
| ApaI | GGGCCC | 1 cut(s) | 72 |
| ApeKI | GCWGC | 5 cut(s) | 95, 242, 416, 419, 490 |
| Asp718I | GGTACC | 1 cut(s) | 463 |
| AspS9I | GGNCC | 4 cut(s) | 51, 57, 68, 69 |
| AsuC2I | CCSGG | 2 cut(s) | 55, 61 |
| AsuHPI | GGTGA | 1 cut(s) | 199 |
| AvaII | GGWCC | 1 cut(s) | 51 |
| BaeGI | GKGCMC | 1 cut(s) | 72 |
| BanI | GGYRCC | 1 cut(s) | 463 |
| BanII | GRGCYC | 1 cut(s) | 72 |
| BbsI | GAAGAC | 1 cut(s) | 386 |
| BbvI | GCAGC | 4 cut(s) | 107, 229, 406, 428 |
| BccI | CCATC | 1 cut(s) | 223 |
| BciT130I | CCWGG | 1 cut(s) | 184 |
| BciVI | GTATCC | 1 cut(s) | 190 |
| BcnI | CCSGG | 2 cut(s) | 55, 61 |
| BfaI | CTAG | 2 cut(s) | 246, 399 |
| BfrI | CTTAAG | 1 cut(s) | 275 |
| BfuI | GTATCC | 1 cut(s) | 190 |
| BisI | GCNGC | 8 cut(s) | 81, 84, 93, 96, 243, 417, 420, 491 |
| BlsI | GCNGC | 8 cut(s) | 82, 85, 94, 97, 244, 418, 421, 492 |
| Bme1390I | CCNGG | 3 cut(s) | 55, 61, 184 |
| Bme18I | GGWCC | 1 cut(s) | 51 |
| BmgT120I | GGNCC | 4 cut(s) | 51, 57, 68, 69 |
| BmiI | GGNNCC | 5 cut(s) | 40, 52, 58, 70, 465 |
| BmrFI | CCNGG | 3 cut(s) | 55, 61, 184 |
| BmsI | GCATC | 2 cut(s) | 225, 269 |
| BpiI | GAAGAC | 1 cut(s) | 386 |
| BpmI | CTGGAG | 1 cut(s) | 140 |
| BpuEI | CTTGAG | 2 cut(s) | 198, 413 |
| BpuMI | CCSGG | 2 cut(s) | 55, 61 |
| BsaJI | CCNNGG | 2 cut(s) | 54, 183 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 48, 60, 66, 343 |
| BseBI | CCWGG | 1 cut(s) | 184 |
| BseDI | CCNNGG | 2 cut(s) | 54, 183 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 48, 60, 66, 343 |
| BseRI | GAGGAG | 5 cut(s) | 30, 33, 36, 39, 425 |
| BseSI | GKGCMC | 1 cut(s) | 72 |
| BseXI | GCAGC | 4 cut(s) | 107, 229, 406, 428 |
| BsgI | GTGCAG | 1 cut(s) | 288 |
| BshFI | GGCC | 3 cut(s) | 59, 70, 374 |
| BshNI | GGYRCC | 1 cut(s) | 463 |
| BsiSI | CCGG | 3 cut(s) | 42, 54, 60 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 48, 60, 66, 343 |
| BsnI | GGCC | 3 cut(s) | 59, 70, 374 |
| Bsp120I | GGGCCC | 1 cut(s) | 68 |
| Bsp1286I | GDGCHC | 1 cut(s) | 72 |
| BspACI | CCGC | 5 cut(s) | 30, 80, 83, 92, 388 |
| BspANI | GGCC | 3 cut(s) | 59, 70, 374 |
| BspHI | TCATGA | 1 cut(s) | 225 |
| BspLI | GGNNCC | 5 cut(s) | 40, 52, 58, 70, 465 |
| BspT107I | GGYRCC | 1 cut(s) | 463 |
| BspTI | CTTAAG | 1 cut(s) | 275 |
| BssECI | CCNNGG | 2 cut(s) | 54, 183 |
| Bst2UI | CCWGG | 1 cut(s) | 184 |
| BstAFI | CTTAAG | 1 cut(s) | 275 |
| BstC8I | GCNNGC | 3 cut(s) | 240, 372, 424 |
| BstDEI | CTNAG | 1 cut(s) | 99 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 89, 92 |
| BstNI | CCWGG | 1 cut(s) | 184 |
| BstNSI | RCATGY | 1 cut(s) | 394 |
| BstSCI | CCNGG | 3 cut(s) | 53, 59, 182 |
| BstSLI | GKGCMC | 1 cut(s) | 72 |
| BstV1I | GCAGC | 4 cut(s) | 107, 229, 406, 428 |
| BstV2I | GAAGAC | 1 cut(s) | 386 |
| BsuI | GTATCC | 1 cut(s) | 190 |
| BsuRI | GGCC | 3 cut(s) | 59, 70, 374 |
| BtgZI | GCGATG | 1 cut(s) | 124 |
| Cac8I | GCNNGC | 3 cut(s) | 240, 372, 424 |
| CciI | TCATGA | 1 cut(s) | 225 |
| Cfr13I | GGNCC | 4 cut(s) | 51, 57, 68, 69 |
| Csp6I | GTAC | 1 cut(s) | 464 |
| CviAII | CATG | 4 cut(s) | 226, 338, 391, 476 |
| CviQI | GTAC | 1 cut(s) | 464 |
| DdeI | CTNAG | 1 cut(s) | 99 |
| EciI | GGCGGA | 1 cut(s) | 45 |
| Eco24I | GRGCYC | 1 cut(s) | 72 |
| Eco47I | GGWCC | 1 cut(s) | 51 |
| EcoRII | CCWGG | 1 cut(s) | 182 |
| EcoT38I | GRGCYC | 1 cut(s) | 72 |
| FaeI | CATG | 4 cut(s) | 229, 341, 394, 479 |
| FaiI | YATR | 6 cut(s) | 227, 325, 339, 392, 471, 477 |
| FatI | CATG | 4 cut(s) | 225, 337, 390, 475 |
| FblI | GTMKAC | 1 cut(s) | 153 |
| Fnu4HI | GCNGC | 8 cut(s) | 81, 84, 93, 96, 243, 417, 420, 491 |
| FriOI | GRGCYC | 1 cut(s) | 72 |
| Fsp4HI | GCNGC | 8 cut(s) | 81, 84, 93, 96, 243, 417, 420, 491 |
| FspBI | CTAG | 2 cut(s) | 246, 399 |
| GluI | GCNGC | 8 cut(s) | 81, 84, 93, 96, 243, 417, 420, 491 |
| GsuI | CTGGAG | 1 cut(s) | 140 |
| HaeIII | GGCC | 3 cut(s) | 59, 70, 374 |
| HapII | CCGG | 3 cut(s) | 42, 54, 60 |
| Hin1II | CATG | 4 cut(s) | 229, 341, 394, 479 |
| HincII | GTYRAC | 2 cut(s) | 154, 175 |
| HindII | GTYRAC | 2 cut(s) | 154, 175 |
| HindIII | AAGCTT | 1 cut(s) | 219 |
| HinfI | GANTC | 1 cut(s) | 266 |
| HpaII | CCGG | 3 cut(s) | 42, 54, 60 |
| HphI | GGTGA | 1 cut(s) | 199 |
| Hpy166II | GTNNAC | 2 cut(s) | 154, 175 |
| Hpy188I | TCNGA | 2 cut(s) | 265, 289 |
| Hpy188III | TCNNGA | 3 cut(s) | 215, 226, 315 |
| Hpy8I | GTNNAC | 2 cut(s) | 154, 175 |
| Hpy99I | CGWCG | 1 cut(s) | 155 |
| HpyCH4IV | ACGT | 1 cut(s) | 177 |
| HpyCH4V | TGCA | 3 cut(s) | 305, 323, 490 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 89, 92 |
| HpyF3I | CTNAG | 1 cut(s) | 99 |
| HpySE526I | ACGT | 1 cut(s) | 177 |
| Hsp92II | CATG | 4 cut(s) | 229, 341, 394, 479 |
| KpnI | GGTACC | 1 cut(s) | 467 |
| LmnI | GCTCC | 3 cut(s) | 32, 38, 433 |
| Lsp1109I | GCAGC | 4 cut(s) | 107, 229, 406, 428 |
| LweI | GCATC | 2 cut(s) | 225, 269 |
| MaeI | CTAG | 2 cut(s) | 246, 399 |
| MaeII | ACGT | 1 cut(s) | 177 |
| MboII | GAAGA | 4 cut(s) | 121, 391, 447, 450 |
| MhlI | GDGCHC | 1 cut(s) | 72 |
| MluCI | AATT | 1 cut(s) | 402 |
| MseI | TTAA | 2 cut(s) | 276, 330 |
| MslI | CAYNNNNRTG | 1 cut(s) | 474 |
| MspA1I | CMGCKG | 1 cut(s) | 419 |
| MspCI | CTTAAG | 1 cut(s) | 275 |
| MspI | CCGG | 3 cut(s) | 42, 54, 60 |
| MspR9I | CCNGG | 3 cut(s) | 55, 61, 184 |
| MvaI | CCWGG | 1 cut(s) | 184 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 89, 92 |
| NciI | CCSGG | 2 cut(s) | 55, 61 |
| NlaIII | CATG | 4 cut(s) | 229, 341, 394, 479 |
| NlaIV | GGNNCC | 5 cut(s) | 40, 52, 58, 70, 465 |
| NmeAIII | GCCGAG | 1 cut(s) | 400 |
| NspI | RCATGY | 1 cut(s) | 394 |
| PagI | TCATGA | 1 cut(s) | 225 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 83, 147 |
| PfeI | GAWTC | 1 cut(s) | 266 |
| PkrI | GCNGC | 8 cut(s) | 82, 85, 94, 97, 244, 418, 421, 492 |
| Psp6I | CCWGG | 1 cut(s) | 182 |
| PspGI | CCWGG | 1 cut(s) | 182 |
| PspN4I | GGNNCC | 5 cut(s) | 40, 52, 58, 70, 465 |
| PspOMI | GGGCCC | 1 cut(s) | 68 |
| PspPI | GGNCC | 4 cut(s) | 51, 57, 68, 69 |
| PvuII | CAGCTG | 1 cut(s) | 419 |
| RsaI | GTAC | 1 cut(s) | 465 |
| RsaNI | GTAC | 1 cut(s) | 464 |
| RseI | CAYNNNNRTG | 1 cut(s) | 474 |
| SalI | GTCGAC | 1 cut(s) | 152 |
| SaqAI | TTAA | 2 cut(s) | 276, 330 |
| SatI | GCNGC | 8 cut(s) | 81, 84, 93, 96, 243, 417, 420, 491 |
| Sau96I | GGNCC | 4 cut(s) | 51, 57, 68, 69 |
| ScrFI | CCNGG | 3 cut(s) | 55, 61, 184 |
| SduI | GDGCHC | 1 cut(s) | 72 |
| SfaNI | GCATC | 2 cut(s) | 225, 269 |
| SinI | GGWCC | 1 cut(s) | 51 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 474 |
| SmlI | CTYRAG | 3 cut(s) | 213, 275, 428 |
| SmoI | CTYRAG | 3 cut(s) | 213, 275, 428 |
| Sse9I | AATT | 1 cut(s) | 402 |
| SsiI | CCGC | 5 cut(s) | 30, 80, 83, 92, 388 |
| SspMI | CTAG | 2 cut(s) | 246, 399 |
| StyD4I | CCNGG | 3 cut(s) | 53, 59, 182 |
| TaiI | ACGT | 1 cut(s) | 180 |
| TaqI | TCGA | 1 cut(s) | 153 |
| TasI | AATT | 1 cut(s) | 402 |
| TauI | GCSGC | 3 cut(s) | 83, 86, 95 |
| TfiI | GAWTC | 1 cut(s) | 266 |
| Tru1I | TTAA | 2 cut(s) | 276, 330 |
| Tru9I | TTAA | 2 cut(s) | 276, 330 |
| TseI | GCWGC | 5 cut(s) | 95, 242, 416, 419, 490 |
| TspDTI | ATGAA | 3 cut(s) | 17, 214, 492 |
| Vha464I | CTTAAG | 1 cut(s) | 275 |
| VpaK11BI | GGWCC | 1 cut(s) | 51 |
| XceI | RCATGY | 1 cut(s) | 394 |
| XmiI | GTMKAC | 1 cut(s) | 153 |
| XspI | CTAG | 2 cut(s) | 246, 399 |