ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 53 |
| AciI | CCGC | 2 cut(s) | 122, 329 |
| AclWI | GGATC | 2 cut(s) | 96, 198 |
| AcsI | RAATTY | 4 cut(s) | 176, 278, 680, 692 |
| AcuI | CTGAAG | 1 cut(s) | 885 |
| AdeI | CACNNNGTG | 1 cut(s) | 731 |
| AfaI | GTAC | 2 cut(s) | 477, 882 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 53, 363, 436, 437, 752 |
| AflII | CTTAAG | 1 cut(s) | 361 |
| AgsI | TTSAA | 5 cut(s) | 22, 343, 385, 697, 916 |
| AhlI | ACTAGT | 1 cut(s) | 467 |
| AjnI | CCWGG | 2 cut(s) | 727, 787 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 365, 397 |
| AluBI | AGCT | 4 cut(s) | 62, 199, 317, 784 |
| AluI | AGCT | 4 cut(s) | 62, 199, 317, 784 |
| Alw26I | GTCTC | 2 cut(s) | 450, 458 |
| AlwI | GGATC | 2 cut(s) | 96, 198 |
| AoxI | GGCC | 3 cut(s) | 352, 581, 812 |
| ApeKI | GCWGC | 1 cut(s) | 43 |
| ApoI | RAATTY | 4 cut(s) | 176, 278, 680, 692 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 254 |
| AspS9I | GGNCC | 3 cut(s) | 8, 353, 582 |
| AsuII | TTCGAA | 1 cut(s) | 248 |
| AvaII | GGWCC | 1 cut(s) | 8 |
| BbvI | GCAGC | 1 cut(s) | 55 |
| BccI | CCATC | 3 cut(s) | 47, 383, 494 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 548, 582 |
| BciT130I | CCWGG | 2 cut(s) | 729, 789 |
| BciVI | GTATCC | 1 cut(s) | 547 |
| BcoDI | GTCTC | 2 cut(s) | 450, 458 |
| BcuI | ACTAGT | 1 cut(s) | 467 |
| BfaI | CTAG | 3 cut(s) | 468, 740, 909 |
| BfrI | CTTAAG | 1 cut(s) | 361 |
| BfuI | GTATCC | 1 cut(s) | 547 |
| BisI | GCNGC | 3 cut(s) | 44, 122, 330 |
| BlsI | GCNGC | 3 cut(s) | 45, 123, 331 |
| Bme1390I | CCNGG | 2 cut(s) | 729, 789 |
| Bme18I | GGWCC | 1 cut(s) | 8 |
| BmgT120I | GGNCC | 3 cut(s) | 8, 353, 582 |
| BmiI | GGNNCC | 2 cut(s) | 355, 858 |
| BmrFI | CCNGG | 2 cut(s) | 729, 789 |
| BmsI | GCATC | 1 cut(s) | 117 |
| BpmI | CTGGAG | 1 cut(s) | 650 |
| Bpu14I | TTCGAA | 1 cut(s) | 248 |
| BsaAI | YACGTR | 1 cut(s) | 479 |
| BsaI | GGTCTC | 1 cut(s) | 450 |
| BsaJI | CCNNGG | 2 cut(s) | 11, 406 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 53, 363, 436, 437, 752 |
| Bse118I | RCCGGY | 1 cut(s) | 325 |
| Bse1I | ACTGG | 1 cut(s) | 355 |
| BseBI | CCWGG | 2 cut(s) | 729, 789 |
| BseDI | CCNNGG | 2 cut(s) | 11, 406 |
| BseGI | GGATG | 1 cut(s) | 394 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 53, 363, 436, 437, 752 |
| BseMII | CTCAG | 3 cut(s) | 227, 453, 866 |
| BseNI | ACTGG | 1 cut(s) | 355 |
| BseXI | GCAGC | 1 cut(s) | 55 |
| BshFI | GGCC | 3 cut(s) | 354, 583, 814 |
| BsiSI | CCGG | 1 cut(s) | 326 |
| BslFI | GGGAC | 1 cut(s) | 453 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 53, 363, 436, 437, 752 |
| BsmAI | GTCTC | 2 cut(s) | 450, 458 |
| BsmFI | GGGAC | 1 cut(s) | 453 |
| BsnI | GGCC | 3 cut(s) | 354, 583, 814 |
| Bso31I | GGTCTC | 1 cut(s) | 450 |
| Bsp119I | TTCGAA | 1 cut(s) | 248 |
| Bsp143I | GATC | 4 cut(s) | 88, 190, 577, 808 |
| BspACI | CCGC | 2 cut(s) | 122, 329 |
| BspANI | GGCC | 3 cut(s) | 354, 583, 814 |
| BspCNI | CTCAG | 3 cut(s) | 226, 454, 867 |
| BspLI | GGNNCC | 2 cut(s) | 355, 858 |
| BspPI | GGATC | 2 cut(s) | 96, 198 |
| BspT104I | TTCGAA | 1 cut(s) | 248 |
| BspTI | CTTAAG | 1 cut(s) | 361 |
| BspTNI | GGTCTC | 1 cut(s) | 450 |
| BsrFI | RCCGGY | 1 cut(s) | 325 |
| BsrI | ACTGG | 1 cut(s) | 355 |
| BssAI | RCCGGY | 1 cut(s) | 325 |
| BssECI | CCNNGG | 2 cut(s) | 11, 406 |
| BssMI | GATC | 4 cut(s) | 88, 190, 577, 808 |
| BssT1I | CCWWGG | 1 cut(s) | 406 |
| Bst2UI | CCWGG | 2 cut(s) | 729, 789 |
| Bst4CI | ACNGT | 2 cut(s) | 12, 444 |
| Bst6I | CTCTTC | 1 cut(s) | 797 |
| BstAFI | CTTAAG | 1 cut(s) | 361 |
| BstBAI | YACGTR | 1 cut(s) | 479 |
| BstBI | TTCGAA | 1 cut(s) | 248 |
| BstC8I | GCNNGC | 3 cut(s) | 126, 567, 747 |
| BstDEI | CTNAG | 4 cut(s) | 213, 462, 570, 875 |
| BstDSI | CCRYGG | 1 cut(s) | 11 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 361 |
| BstF5I | GGATG | 1 cut(s) | 394 |
| BstKTI | GATC | 4 cut(s) | 91, 193, 580, 811 |
| BstMAI | GTCTC | 2 cut(s) | 450, 458 |
| BstMBI | GATC | 4 cut(s) | 88, 190, 577, 808 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 158 |
| BstNI | CCWGG | 2 cut(s) | 729, 789 |
| BstNSI | RCATGY | 1 cut(s) | 121 |
| BstSCI | CCNGG | 2 cut(s) | 727, 787 |
| BstSNI | TACGTA | 1 cut(s) | 479 |
| BstV1I | GCAGC | 1 cut(s) | 55 |
| BstX2I | RGATCY | 1 cut(s) | 88 |
| BstYI | RGATCY | 1 cut(s) | 88 |
| BsuI | GTATCC | 1 cut(s) | 547 |
| BsuRI | GGCC | 3 cut(s) | 354, 583, 814 |
| BtgI | CCRYGG | 1 cut(s) | 11 |
| BtsCI | GGATG | 1 cut(s) | 394 |
| BtsIMutI | CAGTG | 2 cut(s) | 111, 348 |
| Cac8I | GCNNGC | 3 cut(s) | 126, 567, 747 |
| Cfr10I | RCCGGY | 1 cut(s) | 325 |
| Cfr13I | GGNCC | 3 cut(s) | 8, 353, 582 |
| CsiI | ACCWGGT | 1 cut(s) | 727 |
| Csp6I | GTAC | 2 cut(s) | 476, 881 |
| CviAII | CATG | 5 cut(s) | 40, 118, 239, 262, 500 |
| CviQI | GTAC | 2 cut(s) | 476, 881 |
| DdeI | CTNAG | 4 cut(s) | 213, 462, 570, 875 |
| DpnI | GATC | 4 cut(s) | 90, 192, 579, 810 |
| DpnII | GATC | 4 cut(s) | 88, 190, 577, 808 |
| DraIII | CACNNNGTG | 1 cut(s) | 731 |
| Eam1104I | CTCTTC | 1 cut(s) | 797 |
| EarI | CTCTTC | 1 cut(s) | 797 |
| Eco105I | TACGTA | 1 cut(s) | 479 |
| Eco130I | CCWWGG | 1 cut(s) | 406 |
| Eco31I | GGTCTC | 1 cut(s) | 450 |
| Eco47I | GGWCC | 1 cut(s) | 8 |
| Eco57I | CTGAAG | 1 cut(s) | 885 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 361 |
| EcoRII | CCWGG | 2 cut(s) | 727, 787 |
| EcoT14I | CCWWGG | 1 cut(s) | 406 |
| EcoT22I | ATGCAT | 1 cut(s) | 535 |
| ErhI | CCWWGG | 1 cut(s) | 406 |
| FaeI | CATG | 5 cut(s) | 43, 121, 242, 265, 503 |
| FaqI | GGGAC | 1 cut(s) | 453 |
| FatI | CATG | 5 cut(s) | 39, 117, 238, 261, 499 |
| FauNDI | CATATG | 2 cut(s) | 49, 130 |
| Fnu4HI | GCNGC | 3 cut(s) | 44, 122, 330 |
| FokI | GGATG | 1 cut(s) | 401 |
| Fsp4HI | GCNGC | 3 cut(s) | 44, 122, 330 |
| FspBI | CTAG | 3 cut(s) | 468, 740, 909 |
| GluI | GCNGC | 3 cut(s) | 44, 122, 330 |
| GsuI | CTGGAG | 1 cut(s) | 650 |
| HaeIII | GGCC | 3 cut(s) | 354, 583, 814 |
| HapII | CCGG | 1 cut(s) | 326 |
| Hin1II | CATG | 5 cut(s) | 43, 121, 242, 265, 503 |
| HinfI | GANTC | 1 cut(s) | 343 |
| HpaII | CCGG | 1 cut(s) | 326 |
| Hpy166II | GTNNAC | 3 cut(s) | 8, 482, 881 |
| Hpy188I | TCNGA | 1 cut(s) | 622 |
| Hpy188III | TCNNGA | 4 cut(s) | 215, 371, 874, 891 |
| Hpy8I | GTNNAC | 3 cut(s) | 8, 482, 881 |
| HpyAV | CCTTC | 3 cut(s) | 265, 367, 658 |
| HpyCH4III | ACNGT | 2 cut(s) | 12, 444 |
| HpyCH4IV | ACGT | 1 cut(s) | 478 |
| HpyCH4V | TGCA | 8 cut(s) | 43, 209, 242, 265, 533, 607, 701, 749 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 158 |
| HpyF3I | CTNAG | 4 cut(s) | 213, 462, 570, 875 |
| HpySE526I | ACGT | 1 cut(s) | 478 |
| Hsp92II | CATG | 5 cut(s) | 43, 121, 242, 265, 503 |
| Kzo9I | GATC | 4 cut(s) | 88, 190, 577, 808 |
| LmnI | GCTCC | 3 cut(s) | 322, 821, 925 |
| Lsp1109I | GCAGC | 1 cut(s) | 55 |
| LweI | GCATC | 1 cut(s) | 117 |
| MabI | ACCWGGT | 1 cut(s) | 727 |
| MaeI | CTAG | 3 cut(s) | 468, 740, 909 |
| MaeII | ACGT | 1 cut(s) | 478 |
| MalI | GATC | 4 cut(s) | 90, 192, 579, 810 |
| MboI | GATC | 4 cut(s) | 88, 190, 577, 808 |
| MboII | GAAGA | 5 cut(s) | 173, 250, 485, 814, 878 |
| MflI | RGATCY | 1 cut(s) | 88 |
| MluCI | AATT | 9 cut(s) | 176, 219, 243, 278, 338, 608, 680, 692, 776 |
| Mph1103I | ATGCAT | 1 cut(s) | 535 |
| MroXI | GAANNNNTTC | 1 cut(s) | 254 |
| MseI | TTAA | 1 cut(s) | 362 |
| MslI | CAYNNNNRTG | 2 cut(s) | 116, 519 |
| MspCI | CTTAAG | 1 cut(s) | 361 |
| MspI | CCGG | 1 cut(s) | 326 |
| MspR9I | CCNGG | 2 cut(s) | 729, 789 |
| MvaI | CCWGG | 2 cut(s) | 729, 789 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 158 |
| NdeI | CATATG | 2 cut(s) | 49, 130 |
| NdeII | GATC | 4 cut(s) | 88, 190, 577, 808 |
| NlaIII | CATG | 5 cut(s) | 43, 121, 242, 265, 503 |
| NlaIV | GGNNCC | 2 cut(s) | 355, 858 |
| NsiI | ATGCAT | 1 cut(s) | 535 |
| NspI | RCATGY | 1 cut(s) | 121 |
| NspV | TTCGAA | 1 cut(s) | 248 |
| PdmI | GAANNNNTTC | 1 cut(s) | 254 |
| PfeI | GAWTC | 1 cut(s) | 343 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 53 |
| PkrI | GCNGC | 3 cut(s) | 45, 123, 331 |
| Ppu21I | YACGTR | 1 cut(s) | 479 |
| Psp6I | CCWGG | 2 cut(s) | 727, 787 |
| PspGI | CCWGG | 2 cut(s) | 727, 787 |
| PspN4I | GGNNCC | 2 cut(s) | 355, 858 |
| PspPI | GGNCC | 3 cut(s) | 8, 353, 582 |
| PsuI | RGATCY | 1 cut(s) | 88 |
| RsaI | GTAC | 2 cut(s) | 477, 882 |
| RsaNI | GTAC | 2 cut(s) | 476, 881 |
| RseI | CAYNNNNRTG | 2 cut(s) | 116, 519 |
| SaqAI | TTAA | 1 cut(s) | 362 |
| SatI | GCNGC | 3 cut(s) | 44, 122, 330 |
| Sau3AI | GATC | 4 cut(s) | 88, 190, 577, 808 |
| Sau96I | GGNCC | 3 cut(s) | 8, 353, 582 |
| ScrFI | CCNGG | 2 cut(s) | 729, 789 |
| SexAI | ACCWGGT | 1 cut(s) | 727 |
| SfaNI | GCATC | 1 cut(s) | 117 |
| SfuI | TTCGAA | 1 cut(s) | 248 |
| SinI | GGWCC | 1 cut(s) | 8 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 116, 519 |
| SmlI | CTYRAG | 1 cut(s) | 361 |
| SmoI | CTYRAG | 1 cut(s) | 361 |
| SnaBI | TACGTA | 1 cut(s) | 479 |
| SpeI | ACTAGT | 1 cut(s) | 467 |
| Sse9I | AATT | 9 cut(s) | 176, 219, 243, 278, 338, 608, 680, 692, 776 |
| SsiI | CCGC | 2 cut(s) | 122, 329 |
| SspMI | CTAG | 3 cut(s) | 468, 740, 909 |
| StyD4I | CCNGG | 2 cut(s) | 727, 787 |
| StyI | CCWWGG | 1 cut(s) | 406 |
| TaaI | ACNGT | 2 cut(s) | 12, 444 |
| TaiI | ACGT | 1 cut(s) | 481 |
| TaqI | TCGA | 1 cut(s) | 248 |
| TasI | AATT | 9 cut(s) | 176, 219, 243, 278, 338, 608, 680, 692, 776 |
| TatI | WGTACW | 1 cut(s) | 880 |
| TauI | GCSGC | 2 cut(s) | 124, 332 |
| TfiI | GAWTC | 1 cut(s) | 343 |
| Tru1I | TTAA | 1 cut(s) | 362 |
| Tru9I | TTAA | 1 cut(s) | 362 |
| TscAI | CASTG | 2 cut(s) | 118, 355 |
| TseI | GCWGC | 1 cut(s) | 43 |
| TspDTI | ATGAA | 2 cut(s) | 173, 250 |
| TspRI | CASTG | 2 cut(s) | 118, 355 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 53 |
| Vha464I | CTTAAG | 1 cut(s) | 361 |
| VpaK11BI | GGWCC | 1 cut(s) | 8 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 361 |
| XapI | RAATTY | 4 cut(s) | 176, 278, 680, 692 |
| XceI | RCATGY | 1 cut(s) | 121 |
| XmnI | GAANNNNTTC | 1 cut(s) | 254 |
| XspI | CTAG | 3 cut(s) | 468, 740, 909 |
| Zsp2I | ATGCAT | 1 cut(s) | 535 |