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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 10 |
| Acc36I | ACCTGC | 1 cut(s) | 10 |
| AccI | GTMKAC | 1 cut(s) | 243 |
| AciI | CCGC | 1 cut(s) | 161 |
| AfaI | GTAC | 2 cut(s) | 33, 304 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 126, 127 |
| AluBI | AGCT | 2 cut(s) | 188, 401 |
| AluI | AGCT | 2 cut(s) | 188, 401 |
| Alw21I | GWGCWC | 1 cut(s) | 144 |
| Alw26I | GTCTC | 2 cut(s) | 270, 324 |
| AoxI | GGCC | 2 cut(s) | 171, 381 |
| ApeKI | GCWGC | 1 cut(s) | 188 |
| AspA2I | CCTAGG | 2 cut(s) | 385, 460 |
| AspLEI | GCGC | 1 cut(s) | 19 |
| AspS9I | GGNCC | 1 cut(s) | 382 |
| AsuC2I | CCSGG | 1 cut(s) | 175 |
| AsuHPI | GGTGA | 1 cut(s) | 270 |
| AvrII | CCTAGG | 2 cut(s) | 385, 460 |
| BaeGI | GKGCMC | 1 cut(s) | 121 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 31, 63 |
| Bbv12I | GWGCWC | 1 cut(s) | 144 |
| BbvI | GCAGC | 1 cut(s) | 175 |
| BciVI | GTATCC | 1 cut(s) | 171 |
| BcnI | CCSGG | 1 cut(s) | 175 |
| BcoDI | GTCTC | 2 cut(s) | 270, 324 |
| BfaI | CTAG | 4 cut(s) | 200, 237, 386, 461 |
| BfuAI | ACCTGC | 1 cut(s) | 10 |
| BfuI | GTATCC | 1 cut(s) | 171 |
| BisI | GCNGC | 1 cut(s) | 189 |
| BlnI | CCTAGG | 2 cut(s) | 385, 460 |
| BlsI | GCNGC | 1 cut(s) | 190 |
| Bme1390I | CCNGG | 1 cut(s) | 175 |
| BmgT120I | GGNCC | 1 cut(s) | 382 |
| BmrFI | CCNGG | 1 cut(s) | 175 |
| BmrI | ACTGGG | 1 cut(s) | 439 |
| BmsI | GCATC | 1 cut(s) | 208 |
| BmuI | ACTGGG | 1 cut(s) | 439 |
| BoxI | GACNNNNGTC | 1 cut(s) | 262 |
| Bpu10I | CCTNAGC | 1 cut(s) | 402 |
| BpuMI | CCSGG | 1 cut(s) | 175 |
| BsaJI | CCNNGG | 2 cut(s) | 385, 460 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 136, 166 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 126, 127 |
| Bse1I | ACTGG | 2 cut(s) | 362, 434 |
| BseDI | CCNNGG | 2 cut(s) | 385, 460 |
| BseGI | GGATG | 1 cut(s) | 223 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 126, 127 |
| BseMII | CTCAG | 4 cut(s) | 42, 49, 275, 416 |
| BseNI | ACTGG | 2 cut(s) | 362, 434 |
| BseSI | GKGCMC | 1 cut(s) | 121 |
| BseXI | GCAGC | 1 cut(s) | 175 |
| BshFI | GGCC | 2 cut(s) | 173, 383 |
| BsiHKAI | GWGCWC | 1 cut(s) | 144 |
| BsiSI | CCGG | 1 cut(s) | 174 |
| BslFI | GGGAC | 2 cut(s) | 121, 323 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 126, 127 |
| BsmAI | GTCTC | 2 cut(s) | 270, 324 |
| BsmFI | GGGAC | 2 cut(s) | 121, 323 |
| BsnI | GGCC | 2 cut(s) | 173, 383 |
| Bsp1286I | GDGCHC | 2 cut(s) | 121, 144 |
| BspACI | CCGC | 1 cut(s) | 161 |
| BspANI | GGCC | 2 cut(s) | 173, 383 |
| BspCNI | CTCAG | 4 cut(s) | 43, 48, 274, 415 |
| BspMI | ACCTGC | 1 cut(s) | 10 |
| BsrI | ACTGG | 2 cut(s) | 362, 434 |
| BssECI | CCNNGG | 2 cut(s) | 385, 460 |
| BssT1I | CCWWGG | 2 cut(s) | 385, 460 |
| Bst6I | CTCTTC | 1 cut(s) | 222 |
| BstDEI | CTNAG | 4 cut(s) | 35, 51, 261, 402 |
| BstF5I | GGATG | 1 cut(s) | 223 |
| BstHHI | GCGC | 1 cut(s) | 19 |
| BstMAI | GTCTC | 2 cut(s) | 270, 324 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 158, 194 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 262 |
| BstSCI | CCNGG | 1 cut(s) | 173 |
| BstSLI | GKGCMC | 1 cut(s) | 121 |
| BstV1I | GCAGC | 1 cut(s) | 175 |
| BsuI | GTATCC | 1 cut(s) | 171 |
| BsuRI | GGCC | 2 cut(s) | 173, 383 |
| BtsCI | GGATG | 1 cut(s) | 223 |
| BtsIMutI | CAGTG | 1 cut(s) | 144 |
| BveI | ACCTGC | 1 cut(s) | 10 |
| CfoI | GCGC | 1 cut(s) | 19 |
| Cfr13I | GGNCC | 1 cut(s) | 382 |
| CseI | GACGC | 1 cut(s) | 158 |
| Csp6I | GTAC | 2 cut(s) | 32, 303 |
| CviAII | CATG | 1 cut(s) | 415 |
| CviJI | RGCY | 5 cut(s) | 173, 188, 197, 383, 401 |
| CviKI_1 | RGCY | 5 cut(s) | 173, 188, 197, 383, 401 |
| CviQI | GTAC | 2 cut(s) | 32, 303 |
| DdeI | CTNAG | 4 cut(s) | 35, 51, 261, 402 |
| Eam1104I | CTCTTC | 1 cut(s) | 222 |
| EarI | CTCTTC | 1 cut(s) | 222 |
| Eco130I | CCWWGG | 2 cut(s) | 385, 460 |
| EcoO109I | RGGNCCY | 1 cut(s) | 382 |
| EcoT14I | CCWWGG | 2 cut(s) | 385, 460 |
| ErhI | CCWWGG | 2 cut(s) | 385, 460 |
| FaeI | CATG | 1 cut(s) | 418 |
| FaiI | YATR | 3 cut(s) | 224, 416, 475 |
| FaqI | GGGAC | 2 cut(s) | 121, 323 |
| FatI | CATG | 1 cut(s) | 414 |
| FblI | GTMKAC | 1 cut(s) | 243 |
| Fnu4HI | GCNGC | 1 cut(s) | 189 |
| FokI | GGATG | 1 cut(s) | 230 |
| Fsp4HI | GCNGC | 1 cut(s) | 189 |
| FspBI | CTAG | 4 cut(s) | 200, 237, 386, 461 |
| GlaI | GCGC | 1 cut(s) | 18 |
| GluI | GCNGC | 1 cut(s) | 189 |
| HaeIII | GGCC | 2 cut(s) | 173, 383 |
| HapII | CCGG | 1 cut(s) | 174 |
| HgaI | GACGC | 1 cut(s) | 158 |
| HhaI | GCGC | 1 cut(s) | 19 |
| Hin1II | CATG | 1 cut(s) | 418 |
| Hin6I | GCGC | 1 cut(s) | 17 |
| HinP1I | GCGC | 1 cut(s) | 17 |
| HinfI | GANTC | 3 cut(s) | 88, 275, 411 |
| HpaII | CCGG | 1 cut(s) | 174 |
| HphI | GGTGA | 1 cut(s) | 270 |
| Hpy166II | GTNNAC | 3 cut(s) | 244, 410, 420 |
| Hpy188I | TCNGA | 1 cut(s) | 52 |
| Hpy188III | TCNNGA | 1 cut(s) | 200 |
| Hpy8I | GTNNAC | 3 cut(s) | 244, 410, 420 |
| HpyAV | CCTTC | 1 cut(s) | 22 |
| HpyCH4V | TGCA | 4 cut(s) | 64, 74, 191, 377 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 158, 194 |
| HpyF3I | CTNAG | 4 cut(s) | 35, 51, 261, 402 |
| Hsp92II | CATG | 1 cut(s) | 418 |
| HspAI | GCGC | 1 cut(s) | 17 |
| LmnI | GCTCC | 1 cut(s) | 157 |
| LpnPI | CCDG | 7 cut(s) | 5, 167, 187, 282, 375, 389, 415 |
| Lsp1109I | GCAGC | 1 cut(s) | 175 |
| LweI | GCATC | 1 cut(s) | 208 |
| MaeI | CTAG | 4 cut(s) | 200, 237, 386, 461 |
| MaeIII | GTNAC | 2 cut(s) | 232, 276 |
| MboII | GAAGA | 2 cut(s) | 39, 239 |
| MhlI | GDGCHC | 2 cut(s) | 121, 144 |
| MluCI | AATT | 2 cut(s) | 356, 446 |
| MlyI | GAGTC | 2 cut(s) | 284, 405 |
| MmeI | TCCRAC | 1 cut(s) | 347 |
| MnlI | CCTC | 5 cut(s) | 120, 163, 223, 270, 462 |
| MseI | TTAA | 2 cut(s) | 345, 392 |
| MspI | CCGG | 1 cut(s) | 174 |
| MspR9I | CCNGG | 1 cut(s) | 175 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 158, 194 |
| NciI | CCSGG | 1 cut(s) | 175 |
| NlaIII | CATG | 1 cut(s) | 418 |
| NmuCI | GTSAC | 2 cut(s) | 232, 276 |
| PaqCI | CACCTGC | 1 cut(s) | 10 |
| PfeI | GAWTC | 1 cut(s) | 88 |
| PkrI | GCNGC | 1 cut(s) | 190 |
| PleI | GAGTC | 2 cut(s) | 283, 405 |
| PpsI | GAGTC | 2 cut(s) | 283, 405 |
| PshAI | GACNNNNGTC | 1 cut(s) | 262 |
| PspPI | GGNCC | 1 cut(s) | 382 |
| RsaI | GTAC | 2 cut(s) | 33, 304 |
| RsaNI | GTAC | 2 cut(s) | 32, 303 |
| SaqAI | TTAA | 2 cut(s) | 345, 392 |
| SatI | GCNGC | 1 cut(s) | 189 |
| Sau96I | GGNCC | 1 cut(s) | 382 |
| SchI | GAGTC | 2 cut(s) | 284, 405 |
| ScrFI | CCNGG | 1 cut(s) | 175 |
| SduI | GDGCHC | 2 cut(s) | 121, 144 |
| SetI | ASST | 9 cut(s) | 24, 33, 102, 190, 214, 234, 262, 403, 462 |
| SfaNI | GCATC | 1 cut(s) | 208 |
| Sse9I | AATT | 2 cut(s) | 356, 446 |
| SsiI | CCGC | 1 cut(s) | 161 |
| SspMI | CTAG | 4 cut(s) | 200, 237, 386, 461 |
| StyD4I | CCNGG | 1 cut(s) | 173 |
| StyI | CCWWGG | 2 cut(s) | 385, 460 |
| TaqI | TCGA | 1 cut(s) | 9 |
| TasI | AATT | 2 cut(s) | 356, 446 |
| TfiI | GAWTC | 1 cut(s) | 88 |
| Tru1I | TTAA | 2 cut(s) | 345, 392 |
| Tru9I | TTAA | 2 cut(s) | 345, 392 |
| TscAI | CASTG | 1 cut(s) | 151 |
| TseFI | GTSAC | 2 cut(s) | 232, 276 |
| TseI | GCWGC | 1 cut(s) | 188 |
| Tsp45I | GTSAC | 2 cut(s) | 232, 276 |
| TspDTI | ATGAA | 1 cut(s) | 356 |
| TspRI | CASTG | 1 cut(s) | 151 |
| XbaI | TCTAGA | 1 cut(s) | 199 |
| XmaJI | CCTAGG | 2 cut(s) | 385, 460 |
| XmiI | GTMKAC | 1 cut(s) | 243 |
| XspI | CTAG | 4 cut(s) | 200, 237, 386, 461 |