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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 519 |
| AccBSI | CCGCTC | 1 cut(s) | 428 |
| AccII | CGCG | 1 cut(s) | 147 |
| AclWI | GGATC | 4 cut(s) | 42, 55, 70, 83 |
| AfaI | GTAC | 3 cut(s) | 342, 639, 643 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 89, 177, 519 |
| AgsI | TTSAA | 1 cut(s) | 335 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 308, 340 |
| AluBI | AGCT | 3 cut(s) | 166, 252, 659 |
| AluI | AGCT | 3 cut(s) | 166, 252, 659 |
| Alw21I | GWGCWC | 1 cut(s) | 168 |
| Alw26I | GTCTC | 3 cut(s) | 405, 500, 681 |
| AlwI | GGATC | 4 cut(s) | 42, 55, 70, 83 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 662 |
| AoxI | GGCC | 4 cut(s) | 25, 91, 462, 475 |
| ApeKI | GCWGC | 5 cut(s) | 440, 613, 616, 659, 662 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 377 |
| AspLEI | GCGC | 3 cut(s) | 59, 147, 149 |
| AspS9I | GGNCC | 2 cut(s) | 92, 462 |
| AsuC2I | CCSGG | 2 cut(s) | 95, 192 |
| AsuHPI | GGTGA | 1 cut(s) | 304 |
| BamHI | GGATCC | 2 cut(s) | 47, 75 |
| BanII | GRGCYC | 1 cut(s) | 168 |
| BbsI | GAAGAC | 1 cut(s) | 539 |
| Bbv12I | GWGCWC | 1 cut(s) | 168 |
| BbvCI | CCTCAGC | 1 cut(s) | 498 |
| BbvI | GCAGC | 5 cut(s) | 452, 600, 603, 646, 649 |
| BccI | CCATC | 1 cut(s) | 296 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 429, 463 |
| BcnI | CCSGG | 2 cut(s) | 95, 192 |
| BcoDI | GTCTC | 3 cut(s) | 405, 500, 681 |
| BfaI | CTAG | 1 cut(s) | 249 |
| BisI | GCNGC | 8 cut(s) | 5, 28, 426, 441, 614, 617, 660, 663 |
| BlsI | GCNGC | 8 cut(s) | 6, 29, 427, 442, 615, 618, 661, 664 |
| Bme1390I | CCNGG | 2 cut(s) | 95, 192 |
| BmgT120I | GGNCC | 2 cut(s) | 92, 462 |
| BmiI | GGNNCC | 3 cut(s) | 49, 77, 374 |
| BmrFI | CCNGG | 2 cut(s) | 95, 192 |
| BmsI | GCATC | 4 cut(s) | 39, 53, 106, 382 |
| BpiI | GAAGAC | 1 cut(s) | 539 |
| BpmI | CTGGAG | 1 cut(s) | 345 |
| Bpu10I | CCTNAGC | 1 cut(s) | 498 |
| BpuMI | CCSGG | 2 cut(s) | 95, 192 |
| BsaAI | YACGTR | 1 cut(s) | 641 |
| BsaI | GGTCTC | 1 cut(s) | 500 |
| BsaJI | CCNNGG | 2 cut(s) | 191, 478 |
| BsaWI | WCCGGW | 2 cut(s) | 50, 206 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 89, 119 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 89, 177, 519 |
| Bse118I | RCCGGY | 1 cut(s) | 170 |
| Bse1I | ACTGG | 1 cut(s) | 362 |
| BseDI | CCNNGG | 2 cut(s) | 191, 478 |
| BseGI | GGATG | 3 cut(s) | 68, 121, 581 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 89, 177, 519 |
| BseMII | CTCAG | 1 cut(s) | 489 |
| BseNI | ACTGG | 1 cut(s) | 362 |
| BsePI | GCGCGC | 1 cut(s) | 145 |
| BseXI | GCAGC | 5 cut(s) | 452, 600, 603, 646, 649 |
| Bsh1236I | CGCG | 1 cut(s) | 147 |
| Bsh1285I | CGRYCG | 1 cut(s) | 674 |
| BshFI | GGCC | 4 cut(s) | 27, 93, 464, 477 |
| BsiEI | CGRYCG | 1 cut(s) | 674 |
| BsiHKAI | GWGCWC | 1 cut(s) | 168 |
| BsiSI | CCGG | 6 cut(s) | 51, 60, 95, 171, 191, 207 |
| BslFI | GGGAC | 1 cut(s) | 169 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 89, 177, 519 |
| BsmAI | GTCTC | 3 cut(s) | 405, 500, 681 |
| BsmBI | CGTCTC | 2 cut(s) | 405, 681 |
| BsmFI | GGGAC | 1 cut(s) | 169 |
| BsmI | GAATGC | 1 cut(s) | 323 |
| BsnI | GGCC | 4 cut(s) | 27, 93, 464, 477 |
| Bso31I | GGTCTC | 1 cut(s) | 500 |
| Bsp1286I | GDGCHC | 1 cut(s) | 168 |
| Bsp143I | GATC | 4 cut(s) | 14, 47, 75, 593 |
| BspANI | GGCC | 4 cut(s) | 27, 93, 464, 477 |
| BspCNI | CTCAG | 1 cut(s) | 490 |
| BspFNI | CGCG | 1 cut(s) | 147 |
| BspLI | GGNNCC | 3 cut(s) | 49, 77, 374 |
| BspPI | GGATC | 4 cut(s) | 42, 55, 70, 83 |
| BspTNI | GGTCTC | 1 cut(s) | 500 |
| BsrBI | CCGCTC | 1 cut(s) | 428 |
| BsrFI | RCCGGY | 1 cut(s) | 170 |
| BsrI | ACTGG | 1 cut(s) | 362 |
| BssAI | RCCGGY | 1 cut(s) | 170 |
| BssECI | CCNNGG | 2 cut(s) | 191, 478 |
| BssHII | GCGCGC | 1 cut(s) | 145 |
| BssMI | GATC | 4 cut(s) | 14, 47, 75, 593 |
| Bst4CI | ACNGT | 2 cut(s) | 457, 729 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 36, 392 |
| BstBAI | YACGTR | 1 cut(s) | 641 |
| BstC8I | GCNNGC | 4 cut(s) | 147, 168, 172, 238 |
| BstDEI | CTNAG | 2 cut(s) | 228, 498 |
| BstEII | GGTNACC | 1 cut(s) | 220 |
| BstF5I | GGATG | 3 cut(s) | 68, 121, 581 |
| BstFNI | CGCG | 1 cut(s) | 147 |
| BstHHI | GCGC | 3 cut(s) | 59, 147, 149 |
| BstKTI | GATC | 4 cut(s) | 17, 50, 78, 596 |
| BstMAI | GTCTC | 3 cut(s) | 405, 500, 681 |
| BstMBI | GATC | 4 cut(s) | 14, 47, 75, 593 |
| BstMCI | CGRYCG | 1 cut(s) | 674 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 36, 63, 146, 392, 622 |
| BstNSI | RCATGY | 1 cut(s) | 189 |
| BstPI | GGTNACC | 1 cut(s) | 220 |
| BstSCI | CCNGG | 2 cut(s) | 93, 190 |
| BstSNI | TACGTA | 1 cut(s) | 641 |
| BstUI | CGCG | 1 cut(s) | 147 |
| BstV1I | GCAGC | 5 cut(s) | 452, 600, 603, 646, 649 |
| BstV2I | GAAGAC | 1 cut(s) | 539 |
| BstX2I | RGATCY | 2 cut(s) | 47, 75 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 369 |
| BstYI | RGATCY | 2 cut(s) | 47, 75 |
| BsuRI | GGCC | 4 cut(s) | 27, 93, 464, 477 |
| BtsCI | GGATG | 3 cut(s) | 68, 121, 581 |
| BtsI | GCAGTG | 1 cut(s) | 156 |
| BtsIMutI | CAGTG | 2 cut(s) | 156, 462 |
| Cac8I | GCNNGC | 4 cut(s) | 147, 168, 172, 238 |
| CaiI | CAGNNNCTG | 1 cut(s) | 662 |
| CfoI | GCGC | 3 cut(s) | 59, 147, 149 |
| Cfr10I | RCCGGY | 1 cut(s) | 170 |
| Cfr13I | GGNCC | 2 cut(s) | 92, 462 |
| Csp6I | GTAC | 3 cut(s) | 341, 638, 642 |
| CviAII | CATG | 4 cut(s) | 89, 186, 469, 519 |
| CviQI | GTAC | 3 cut(s) | 341, 638, 642 |
| DdeI | CTNAG | 2 cut(s) | 228, 498 |
| DpnI | GATC | 4 cut(s) | 16, 49, 77, 595 |
| DpnII | GATC | 4 cut(s) | 14, 47, 75, 593 |
| EciI | GGCGGA | 3 cut(s) | 22, 345, 518 |
| Ecl136II | GAGCTC | 1 cut(s) | 166 |
| Eco105I | TACGTA | 1 cut(s) | 641 |
| Eco24I | GRGCYC | 1 cut(s) | 168 |
| Eco31I | GGTCTC | 1 cut(s) | 500 |
| Eco53kI | GAGCTC | 1 cut(s) | 166 |
| Eco91I | GGTNACC | 1 cut(s) | 220 |
| EcoICRI | GAGCTC | 1 cut(s) | 166 |
| EcoO65I | GGTNACC | 1 cut(s) | 220 |
| EcoT38I | GRGCYC | 1 cut(s) | 168 |
| Esp3I | CGTCTC | 2 cut(s) | 405, 681 |
| FaeI | CATG | 4 cut(s) | 92, 189, 472, 522 |
| FaiI | YATR | 6 cut(s) | 90, 111, 187, 470, 520, 605 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 414, 446 |
| FaqI | GGGAC | 1 cut(s) | 169 |
| FatI | CATG | 4 cut(s) | 88, 185, 468, 518 |
| FauI | CCCGC | 1 cut(s) | 640 |
| Fnu4HI | GCNGC | 8 cut(s) | 5, 28, 426, 441, 614, 617, 660, 663 |
| FokI | GGATG | 3 cut(s) | 75, 128, 568 |
| FriOI | GRGCYC | 1 cut(s) | 168 |
| Fsp4HI | GCNGC | 8 cut(s) | 5, 28, 426, 441, 614, 617, 660, 663 |
| FspBI | CTAG | 1 cut(s) | 249 |
| GlaI | GCGC | 3 cut(s) | 58, 146, 148 |
| GluI | GCNGC | 8 cut(s) | 5, 28, 426, 441, 614, 617, 660, 663 |
| GsuI | CTGGAG | 1 cut(s) | 345 |
| HaeIII | GGCC | 4 cut(s) | 27, 93, 464, 477 |
| HapII | CCGG | 6 cut(s) | 51, 60, 95, 171, 191, 207 |
| HhaI | GCGC | 3 cut(s) | 59, 147, 149 |
| Hin1II | CATG | 4 cut(s) | 92, 189, 472, 522 |
| Hin6I | GCGC | 3 cut(s) | 57, 145, 147 |
| HinP1I | GCGC | 3 cut(s) | 57, 145, 147 |
| HinfI | GANTC | 3 cut(s) | 19, 346, 446 |
| HpaII | CCGG | 6 cut(s) | 51, 60, 95, 171, 191, 207 |
| HphI | GGTGA | 1 cut(s) | 304 |
| Hpy166II | GTNNAC | 2 cut(s) | 644, 725 |
| Hpy188I | TCNGA | 4 cut(s) | 75, 163, 329, 593 |
| Hpy8I | GTNNAC | 2 cut(s) | 644, 725 |
| Hpy99I | CGWCG | 1 cut(s) | 419 |
| HpyAV | CCTTC | 1 cut(s) | 175 |
| HpyCH4III | ACNGT | 2 cut(s) | 457, 729 |
| HpyCH4IV | ACGT | 3 cut(s) | 125, 307, 640 |
| HpyCH4V | TGCA | 3 cut(s) | 323, 386, 395 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 36, 63, 146, 392, 622 |
| HpyF3I | CTNAG | 2 cut(s) | 228, 498 |
| HpySE526I | ACGT | 3 cut(s) | 125, 307, 640 |
| Hsp92II | CATG | 4 cut(s) | 92, 189, 472, 522 |
| HspAI | GCGC | 3 cut(s) | 57, 145, 147 |
| KroI | GCCGGC | 1 cut(s) | 170 |
| KroNI | GCCGGC | 1 cut(s) | 172 |
| Kzo9I | GATC | 4 cut(s) | 14, 47, 75, 593 |
| LmnI | GCTCC | 1 cut(s) | 163 |
| LpnPI | CCDG | 8 cut(s) | 64, 73, 108, 184, 204, 220, 375, 389 |
| Lsp1109I | GCAGC | 5 cut(s) | 452, 600, 603, 646, 649 |
| LweI | GCATC | 4 cut(s) | 39, 53, 106, 382 |
| MaeI | CTAG | 1 cut(s) | 249 |
| MaeII | ACGT | 3 cut(s) | 125, 307, 640 |
| MaeIII | GTNAC | 2 cut(s) | 121, 220 |
| MalI | GATC | 4 cut(s) | 16, 49, 77, 595 |
| MbiI | CCGCTC | 1 cut(s) | 428 |
| MboI | GATC | 4 cut(s) | 14, 47, 75, 593 |
| MboII | GAAGA | 2 cut(s) | 541, 544 |
| MflI | RGATCY | 2 cut(s) | 47, 75 |
| MhlI | GDGCHC | 1 cut(s) | 168 |
| MluCI | AATT | 2 cut(s) | 272, 351 |
| MlyI | GAGTC | 2 cut(s) | 340, 455 |
| MmeI | TCCRAC | 2 cut(s) | 53, 249 |
| MnlI | CCTC | 6 cut(s) | 17, 91, 369, 453, 473, 493 |
| MreI | CGCCGGCG | 1 cut(s) | 170 |
| MroNI | GCCGGC | 1 cut(s) | 170 |
| MroXI | GAANNNNTTC | 1 cut(s) | 377 |
| MslI | CAYNNNNRTG | 1 cut(s) | 114 |
| MspA1I | CMGCKG | 3 cut(s) | 443, 635, 659 |
| MspI | CCGG | 6 cut(s) | 51, 60, 95, 171, 191, 207 |
| MspR9I | CCNGG | 2 cut(s) | 95, 192 |
| Mva1269I | GAATGC | 1 cut(s) | 323 |
| MvnI | CGCG | 1 cut(s) | 147 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 36, 63, 146, 392, 622 |
| NaeI | GCCGGC | 1 cut(s) | 172 |
| NciI | CCSGG | 2 cut(s) | 95, 192 |
| NdeII | GATC | 4 cut(s) | 14, 47, 75, 593 |
| NgoMIV | GCCGGC | 1 cut(s) | 170 |
| NlaIII | CATG | 4 cut(s) | 92, 189, 472, 522 |
| NlaIV | GGNNCC | 3 cut(s) | 49, 77, 374 |
| NmeAIII | GCCGAG | 1 cut(s) | 503 |
| NspI | RCATGY | 1 cut(s) | 189 |
| PauI | GCGCGC | 1 cut(s) | 145 |
| PctI | GAATGC | 1 cut(s) | 323 |
| PdiI | GCCGGC | 1 cut(s) | 172 |
| PdmI | GAANNNNTTC | 1 cut(s) | 377 |
| PfeI | GAWTC | 1 cut(s) | 19 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 519 |
| PkrI | GCNGC | 8 cut(s) | 6, 29, 427, 442, 615, 618, 661, 664 |
| PleI | GAGTC | 2 cut(s) | 340, 454 |
| PpsI | GAGTC | 2 cut(s) | 340, 454 |
| Ppu21I | YACGTR | 1 cut(s) | 641 |
| Psp124BI | GAGCTC | 1 cut(s) | 168 |
| PspEI | GGTNACC | 1 cut(s) | 220 |
| PspN4I | GGNNCC | 3 cut(s) | 49, 77, 374 |
| PspPI | GGNCC | 2 cut(s) | 92, 462 |
| PstNI | CAGNNNCTG | 1 cut(s) | 662 |
| PsuI | RGATCY | 2 cut(s) | 47, 75 |
| PteI | GCGCGC | 1 cut(s) | 145 |
| PvuII | CAGCTG | 1 cut(s) | 659 |
| RsaI | GTAC | 3 cut(s) | 342, 639, 643 |
| RsaNI | GTAC | 3 cut(s) | 341, 638, 642 |
| RseI | CAYNNNNRTG | 1 cut(s) | 114 |
| SacI | GAGCTC | 1 cut(s) | 168 |
| SatI | GCNGC | 8 cut(s) | 5, 28, 426, 441, 614, 617, 660, 663 |
| Sau3AI | GATC | 4 cut(s) | 14, 47, 75, 593 |
| Sau96I | GGNCC | 2 cut(s) | 92, 462 |
| SchI | GAGTC | 2 cut(s) | 340, 455 |
| ScrFI | CCNGG | 2 cut(s) | 95, 192 |
| SduI | GDGCHC | 1 cut(s) | 168 |
| SetI | ASST | 9 cut(s) | 102, 128, 168, 254, 269, 310, 378, 643, 661 |
| SfaNI | GCATC | 4 cut(s) | 39, 53, 106, 382 |
| SgrAI | CRCCGGYG | 1 cut(s) | 170 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 114 |
| SnaBI | TACGTA | 1 cut(s) | 641 |
| Sse9I | AATT | 2 cut(s) | 272, 351 |
| SspMI | CTAG | 1 cut(s) | 249 |
| SstI | GAGCTC | 1 cut(s) | 168 |
| StyD4I | CCNGG | 2 cut(s) | 93, 190 |
| TaaI | ACNGT | 2 cut(s) | 457, 729 |
| TaiI | ACGT | 3 cut(s) | 128, 310, 643 |
| TaqI | TCGA | 5 cut(s) | 17, 22, 449, 527, 596 |
| TaqII | GACCGA | 1 cut(s) | 660 |
| TasI | AATT | 2 cut(s) | 272, 351 |
| TatI | WGTACW | 1 cut(s) | 340 |
| TauI | GCSGC | 3 cut(s) | 7, 30, 428 |
| TfiI | GAWTC | 1 cut(s) | 19 |
| TscAI | CASTG | 2 cut(s) | 156, 462 |
| TseI | GCWGC | 5 cut(s) | 440, 613, 616, 659, 662 |
| TspDTI | ATGAA | 1 cut(s) | 485 |
| TspGWI | ACGGA | 2 cut(s) | 68, 432 |
| TspRI | CASTG | 2 cut(s) | 156, 462 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 519 |
| XceI | RCATGY | 1 cut(s) | 189 |
| XmnI | GAANNNNTTC | 1 cut(s) | 377 |
| XspI | CTAG | 1 cut(s) | 249 |