ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 153, 1012 |
| AccIII | TCCGGA | 1 cut(s) | 646 |
| AciI | CCGC | 4 cut(s) | 35, 386, 403, 816 |
| AclWI | GGATC | 2 cut(s) | 153, 711 |
| AcoI | YGGCCR | 1 cut(s) | 138 |
| AcsI | RAATTY | 1 cut(s) | 962 |
| AcyI | GRCGYC | 1 cut(s) | 154 |
| AfaI | GTAC | 4 cut(s) | 177, 303, 570, 906 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 317, 796, 797 |
| AgeI | ACCGGT | 2 cut(s) | 685, 907 |
| AgsI | TTSAA | 4 cut(s) | 514, 584, 745, 1049 |
| AjnI | CCWGG | 3 cut(s) | 110, 251, 997 |
| AluBI | AGCT | 5 cut(s) | 282, 700, 929, 943, 1039 |
| AluI | AGCT | 5 cut(s) | 282, 700, 929, 943, 1039 |
| Alw21I | GWGCWC | 1 cut(s) | 808 |
| Alw26I | GTCTC | 3 cut(s) | 876, 1126, 1138 |
| Alw44I | GTGCAC | 1 cut(s) | 804 |
| AlwI | GGATC | 2 cut(s) | 153, 711 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 223, 349 |
| Aor13HI | TCCGGA | 1 cut(s) | 646 |
| AoxI | GGCC | 4 cut(s) | 138, 634, 842, 1079 |
| ApaLI | GTGCAC | 1 cut(s) | 804 |
| ApeKI | GCWGC | 2 cut(s) | 82, 943 |
| ApoI | RAATTY | 1 cut(s) | 962 |
| AsiGI | ACCGGT | 2 cut(s) | 685, 907 |
| AspLEI | GCGC | 2 cut(s) | 82, 156 |
| AspS9I | GGNCC | 5 cut(s) | 207, 352, 635, 734, 1089 |
| AsuHPI | GGTGA | 4 cut(s) | 112, 766, 859, 949 |
| AsuII | TTCGAA | 1 cut(s) | 241 |
| AvaII | GGWCC | 4 cut(s) | 207, 352, 734, 1089 |
| BaeGI | GKGCMC | 1 cut(s) | 808 |
| BanI | GGYRCC | 2 cut(s) | 153, 1012 |
| Bbv12I | GWGCWC | 1 cut(s) | 808 |
| BbvCI | CCTCAGC | 1 cut(s) | 1020 |
| BbvI | GCAGC | 2 cut(s) | 94, 930 |
| BccI | CCATC | 5 cut(s) | 259, 311, 449, 515, 667 |
| BceAI | ACGGC | 4 cut(s) | 125, 153, 295, 1094 |
| BciT130I | CCWGG | 3 cut(s) | 112, 253, 999 |
| BclI | TGATCA | 1 cut(s) | 849 |
| BcoDI | GTCTC | 3 cut(s) | 876, 1126, 1138 |
| BfaI | CTAG | 4 cut(s) | 693, 722, 1040, 1180 |
| BfmI | CTRYAG | 1 cut(s) | 305 |
| BfoI | RGCGCY | 1 cut(s) | 157 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 431, 841 |
| BisI | GCNGC | 3 cut(s) | 83, 386, 944 |
| BlsI | GCNGC | 3 cut(s) | 84, 387, 945 |
| Bme1390I | CCNGG | 3 cut(s) | 112, 253, 999 |
| Bme18I | GGWCC | 4 cut(s) | 207, 352, 734, 1089 |
| BmgT120I | GGNCC | 5 cut(s) | 207, 352, 635, 734, 1089 |
| BmiI | GGNNCC | 5 cut(s) | 155, 209, 637, 1014, 1090 |
| BmrFI | CCNGG | 3 cut(s) | 112, 253, 999 |
| BmsI | GCATC | 5 cut(s) | 336, 460, 780, 1020, 1048 |
| BpmI | CTGGAG | 2 cut(s) | 235, 1020 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1020 |
| Bpu14I | TTCGAA | 1 cut(s) | 241 |
| BsaHI | GRCGYC | 1 cut(s) | 154 |
| BsaI | GGTCTC | 1 cut(s) | 1126 |
| BsaJI | CCNNGG | 5 cut(s) | 141, 426, 474, 836, 997 |
| BsaWI | WCCGGW | 3 cut(s) | 646, 685, 907 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 875, 905 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 317, 796, 797 |
| Bse118I | RCCGGY | 5 cut(s) | 388, 685, 844, 907, 1015 |
| Bse3DI | GCAATG | 2 cut(s) | 329, 411 |
| BseAI | TCCGGA | 1 cut(s) | 646 |
| BseBI | CCWGG | 3 cut(s) | 112, 253, 999 |
| BseDI | CCNNGG | 5 cut(s) | 141, 426, 474, 836, 997 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 317, 796, 797 |
| BseMI | GCAATG | 2 cut(s) | 329, 411 |
| BseMII | CTCAG | 4 cut(s) | 107, 140, 752, 1011 |
| BseRI | GAGGAG | 2 cut(s) | 90, 95 |
| BseSI | GKGCMC | 1 cut(s) | 808 |
| BseX3I | CGGCCG | 1 cut(s) | 138 |
| BseXI | GCAGC | 2 cut(s) | 94, 930 |
| BsgI | GTGCAG | 1 cut(s) | 362 |
| Bsh1285I | CGRYCG | 2 cut(s) | 141, 690 |
| BshFI | GGCC | 4 cut(s) | 140, 636, 844, 1081 |
| BshNI | GGYRCC | 2 cut(s) | 153, 1012 |
| BshTI | ACCGGT | 2 cut(s) | 685, 907 |
| BsiEI | CGRYCG | 2 cut(s) | 141, 690 |
| BsiHKAI | GWGCWC | 1 cut(s) | 808 |
| BsiSI | CCGG | 7 cut(s) | 163, 389, 647, 686, 845, 908, 1016 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 317, 796, 797 |
| BsmAI | GTCTC | 3 cut(s) | 876, 1126, 1138 |
| BsmBI | CGTCTC | 1 cut(s) | 876 |
| BsnI | GGCC | 4 cut(s) | 140, 636, 844, 1081 |
| Bso31I | GGTCTC | 1 cut(s) | 1126 |
| Bsp119I | TTCGAA | 1 cut(s) | 241 |
| Bsp1286I | GDGCHC | 1 cut(s) | 808 |
| Bsp13I | TCCGGA | 1 cut(s) | 646 |
| Bsp143I | GATC | 5 cut(s) | 145, 235, 613, 703, 849 |
| BspACI | CCGC | 4 cut(s) | 35, 386, 403, 816 |
| BspANI | GGCC | 4 cut(s) | 140, 636, 844, 1081 |
| BspCNI | CTCAG | 4 cut(s) | 106, 141, 751, 1012 |
| BspEI | TCCGGA | 1 cut(s) | 646 |
| BspHI | TCATGA | 1 cut(s) | 1026 |
| BspLI | GGNNCC | 5 cut(s) | 155, 209, 637, 1014, 1090 |
| BspPI | GGATC | 2 cut(s) | 153, 711 |
| BspT104I | TTCGAA | 1 cut(s) | 241 |
| BspT107I | GGYRCC | 2 cut(s) | 153, 1012 |
| BspTNI | GGTCTC | 1 cut(s) | 1126 |
| BsrDI | GCAATG | 2 cut(s) | 329, 411 |
| BsrFI | RCCGGY | 5 cut(s) | 388, 685, 844, 907, 1015 |
| BssAI | RCCGGY | 5 cut(s) | 388, 685, 844, 907, 1015 |
| BssECI | CCNNGG | 5 cut(s) | 141, 426, 474, 836, 997 |
| BssMI | GATC | 5 cut(s) | 145, 235, 613, 703, 849 |
| BssNI | GRCGYC | 1 cut(s) | 154 |
| BssT1I | CCWWGG | 2 cut(s) | 426, 836 |
| Bst2UI | CCWGG | 3 cut(s) | 112, 253, 999 |
| Bst4CI | ACNGT | 5 cut(s) | 290, 465, 810, 877, 1148 |
| BstACI | GRCGYC | 1 cut(s) | 154 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 340 |
| BstBI | TTCGAA | 1 cut(s) | 241 |
| BstC8I | GCNNGC | 2 cut(s) | 390, 1017 |
| BstDEI | CTNAG | 4 cut(s) | 93, 149, 738, 1020 |
| BstDSI | CCRYGG | 2 cut(s) | 141, 474 |
| BstH2I | RGCGCY | 1 cut(s) | 157 |
| BstHHI | GCGC | 2 cut(s) | 82, 156 |
| BstKTI | GATC | 5 cut(s) | 148, 238, 616, 706, 852 |
| BstMAI | GTCTC | 3 cut(s) | 876, 1126, 1138 |
| BstMBI | GATC | 5 cut(s) | 145, 235, 613, 703, 849 |
| BstMCI | CGRYCG | 2 cut(s) | 141, 690 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 26, 340, 422, 431, 841 |
| BstNI | CCWGG | 3 cut(s) | 112, 253, 999 |
| BstNSI | RCATGY | 3 cut(s) | 67, 385, 1009 |
| BstSCI | CCNGG | 3 cut(s) | 110, 251, 997 |
| BstSFI | CTRYAG | 1 cut(s) | 305 |
| BstSLI | GKGCMC | 1 cut(s) | 808 |
| BstV1I | GCAGC | 2 cut(s) | 94, 930 |
| BstX2I | RGATCY | 2 cut(s) | 145, 703 |
| BstYI | RGATCY | 2 cut(s) | 145, 703 |
| BstZI | CGGCCG | 1 cut(s) | 138 |
| BsuRI | GGCC | 4 cut(s) | 140, 636, 844, 1081 |
| BtgI | CCRYGG | 2 cut(s) | 141, 474 |
| BtsIMutI | CAGTG | 2 cut(s) | 806, 973 |
| Cac8I | GCNNGC | 2 cut(s) | 390, 1017 |
| CaiI | CAGNNNCTG | 2 cut(s) | 223, 349 |
| CciI | TCATGA | 1 cut(s) | 1026 |
| CfoI | GCGC | 2 cut(s) | 82, 156 |
| Cfr10I | RCCGGY | 5 cut(s) | 388, 685, 844, 907, 1015 |
| Cfr13I | GGNCC | 5 cut(s) | 207, 352, 635, 734, 1089 |
| Csp6I | GTAC | 4 cut(s) | 176, 302, 569, 905 |
| CspAI | ACCGGT | 2 cut(s) | 685, 907 |
| CviAII | CATG | 6 cut(s) | 64, 382, 626, 731, 1006, 1027 |
| CviQI | GTAC | 4 cut(s) | 176, 302, 569, 905 |
| DdeI | CTNAG | 4 cut(s) | 93, 149, 738, 1020 |
| DinI | GGCGCC | 1 cut(s) | 155 |
| DpnI | GATC | 5 cut(s) | 147, 237, 615, 705, 851 |
| DpnII | GATC | 5 cut(s) | 145, 235, 613, 703, 849 |
| EaeI | YGGCCR | 1 cut(s) | 138 |
| EagI | CGGCCG | 1 cut(s) | 138 |
| EciI | GGCGGA | 1 cut(s) | 831 |
| EclXI | CGGCCG | 1 cut(s) | 138 |
| Eco130I | CCWWGG | 2 cut(s) | 426, 836 |
| Eco31I | GGTCTC | 1 cut(s) | 1126 |
| Eco47I | GGWCC | 4 cut(s) | 207, 352, 734, 1089 |
| Eco52I | CGGCCG | 1 cut(s) | 138 |
| EcoO109I | RGGNCCY | 2 cut(s) | 207, 635 |
| EcoRII | CCWGG | 3 cut(s) | 110, 251, 997 |
| EcoT14I | CCWWGG | 2 cut(s) | 426, 836 |
| EgeI | GGCGCC | 1 cut(s) | 155 |
| EheI | GGCGCC | 1 cut(s) | 155 |
| ErhI | CCWWGG | 2 cut(s) | 426, 836 |
| Esp3I | CGTCTC | 1 cut(s) | 876 |
| FaeI | CATG | 6 cut(s) | 67, 385, 629, 734, 1009, 1030 |
| FatI | CATG | 6 cut(s) | 63, 381, 625, 730, 1005, 1026 |
| FauI | CCCGC | 1 cut(s) | 28 |
| FbaI | TGATCA | 1 cut(s) | 849 |
| Fnu4HI | GCNGC | 3 cut(s) | 83, 386, 944 |
| Fsp4HI | GCNGC | 3 cut(s) | 83, 386, 944 |
| FspBI | CTAG | 4 cut(s) | 693, 722, 1040, 1180 |
| GlaI | GCGC | 2 cut(s) | 81, 155 |
| GluI | GCNGC | 3 cut(s) | 83, 386, 944 |
| GsuI | CTGGAG | 2 cut(s) | 235, 1020 |
| HaeII | RGCGCY | 1 cut(s) | 157 |
| HaeIII | GGCC | 4 cut(s) | 140, 636, 844, 1081 |
| HapII | CCGG | 7 cut(s) | 163, 389, 647, 686, 845, 908, 1016 |
| HhaI | GCGC | 2 cut(s) | 82, 156 |
| Hin1I | GRCGYC | 1 cut(s) | 154 |
| Hin1II | CATG | 6 cut(s) | 67, 385, 629, 734, 1009, 1030 |
| Hin6I | GCGC | 2 cut(s) | 80, 154 |
| HinP1I | GCGC | 2 cut(s) | 80, 154 |
| HincII | GTYRAC | 1 cut(s) | 52 |
| HindII | GTYRAC | 1 cut(s) | 52 |
| HinfI | GANTC | 4 cut(s) | 248, 484, 824, 890 |
| HpaII | CCGG | 7 cut(s) | 163, 389, 647, 686, 845, 908, 1016 |
| HphI | GGTGA | 4 cut(s) | 112, 766, 859, 949 |
| Hpy166II | GTNNAC | 4 cut(s) | 52, 571, 728, 806 |
| Hpy188I | TCNGA | 6 cut(s) | 70, 150, 264, 528, 829, 1057 |
| Hpy188III | TCNNGA | 5 cut(s) | 185, 511, 647, 1027, 1046 |
| Hpy8I | GTNNAC | 4 cut(s) | 52, 571, 728, 806 |
| Hpy99I | CGWCG | 2 cut(s) | 136, 139 |
| HpyAV | CCTTC | 5 cut(s) | 65, 241, 250, 743, 1111 |
| HpyCH4III | ACNGT | 5 cut(s) | 290, 465, 810, 877, 1148 |
| HpyCH4V | TGCA | 5 cut(s) | 326, 334, 343, 806, 1061 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 26, 340, 422, 431, 841 |
| HpyF3I | CTNAG | 4 cut(s) | 93, 149, 738, 1020 |
| Hsp92I | GRCGYC | 1 cut(s) | 154 |
| Hsp92II | CATG | 6 cut(s) | 67, 385, 629, 734, 1009, 1030 |
| HspAI | GCGC | 2 cut(s) | 80, 154 |
| KasI | GGCGCC | 1 cut(s) | 153 |
| Kpn2I | TCCGGA | 1 cut(s) | 646 |
| KroI | GCCGGC | 2 cut(s) | 388, 1015 |
| KroNI | GCCGGC | 2 cut(s) | 390, 1017 |
| Ksp22I | TGATCA | 1 cut(s) | 849 |
| Kzo9I | GATC | 5 cut(s) | 145, 235, 613, 703, 849 |
| LmnI | GCTCC | 3 cut(s) | 77, 279, 818 |
| Lsp1109I | GCAGC | 2 cut(s) | 94, 930 |
| LweI | GCATC | 5 cut(s) | 336, 460, 780, 1020, 1048 |
| MaeI | CTAG | 4 cut(s) | 693, 722, 1040, 1180 |
| MalI | GATC | 5 cut(s) | 147, 237, 615, 705, 851 |
| MboI | GATC | 5 cut(s) | 145, 235, 613, 703, 849 |
| MboII | GAAGA | 7 cut(s) | 230, 352, 541, 654, 948, 1078, 1126 |
| MflI | RGATCY | 2 cut(s) | 145, 703 |
| MhlI | GDGCHC | 1 cut(s) | 808 |
| MluCI | AATT | 3 cut(s) | 587, 950, 962 |
| Mly113I | GGCGCC | 1 cut(s) | 154 |
| MlyI | GAGTC | 3 cut(s) | 242, 833, 884 |
| MmeI | TCCRAC | 1 cut(s) | 852 |
| MreI | CGCCGGCG | 1 cut(s) | 388 |
| MroI | TCCGGA | 1 cut(s) | 646 |
| MroNI | GCCGGC | 2 cut(s) | 388, 1015 |
| MseI | TTAA | 2 cut(s) | 285, 678 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1010 |
| MspA1I | CMGCKG | 1 cut(s) | 403 |
| MspI | CCGG | 7 cut(s) | 163, 389, 647, 686, 845, 908, 1016 |
| MspR9I | CCNGG | 3 cut(s) | 112, 253, 999 |
| MvaI | CCWGG | 3 cut(s) | 112, 253, 999 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 26, 340, 422, 431, 841 |
| NaeI | GCCGGC | 2 cut(s) | 390, 1017 |
| NarI | GGCGCC | 1 cut(s) | 154 |
| NdeII | GATC | 5 cut(s) | 145, 235, 613, 703, 849 |
| NgoMIV | GCCGGC | 2 cut(s) | 388, 1015 |
| NlaIII | CATG | 6 cut(s) | 67, 385, 629, 734, 1009, 1030 |
| NlaIV | GGNNCC | 5 cut(s) | 155, 209, 637, 1014, 1090 |
| NspI | RCATGY | 3 cut(s) | 67, 385, 1009 |
| NspV | TTCGAA | 1 cut(s) | 241 |
| PagI | TCATGA | 1 cut(s) | 1026 |
| PdiI | GCCGGC | 2 cut(s) | 390, 1017 |
| PfeI | GAWTC | 1 cut(s) | 484 |
| PfoI | TCCNGGA | 1 cut(s) | 251 |
| PinAI | ACCGGT | 2 cut(s) | 685, 907 |
| PkrI | GCNGC | 3 cut(s) | 84, 387, 945 |
| PleI | GAGTC | 3 cut(s) | 242, 832, 884 |
| PluTI | GGCGCC | 1 cut(s) | 157 |
| PpsI | GAGTC | 3 cut(s) | 242, 832, 884 |
| PpuMI | RGGWCCY | 1 cut(s) | 207 |
| Psp5II | RGGWCCY | 1 cut(s) | 207 |
| Psp6I | CCWGG | 3 cut(s) | 110, 251, 997 |
| PspGI | CCWGG | 3 cut(s) | 110, 251, 997 |
| PspN4I | GGNNCC | 5 cut(s) | 155, 209, 637, 1014, 1090 |
| PspPI | GGNCC | 5 cut(s) | 207, 352, 635, 734, 1089 |
| PspPPI | RGGWCCY | 1 cut(s) | 207 |
| PstNI | CAGNNNCTG | 2 cut(s) | 223, 349 |
| PsuI | RGATCY | 2 cut(s) | 145, 703 |
| RsaI | GTAC | 4 cut(s) | 177, 303, 570, 906 |
| RsaNI | GTAC | 4 cut(s) | 176, 302, 569, 905 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1010 |
| SaqAI | TTAA | 2 cut(s) | 285, 678 |
| SatI | GCNGC | 3 cut(s) | 83, 386, 944 |
| Sau3AI | GATC | 5 cut(s) | 145, 235, 613, 703, 849 |
| Sau96I | GGNCC | 5 cut(s) | 207, 352, 635, 734, 1089 |
| SchI | GAGTC | 3 cut(s) | 242, 833, 884 |
| ScrFI | CCNGG | 3 cut(s) | 112, 253, 999 |
| SduI | GDGCHC | 1 cut(s) | 808 |
| SfaNI | GCATC | 5 cut(s) | 336, 460, 780, 1020, 1048 |
| SfcI | CTRYAG | 1 cut(s) | 305 |
| SfoI | GGCGCC | 1 cut(s) | 155 |
| SfuI | TTCGAA | 1 cut(s) | 241 |
| SgrAI | CRCCGGYG | 1 cut(s) | 388 |
| SinI | GGWCC | 4 cut(s) | 207, 352, 734, 1089 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1010 |
| Sse9I | AATT | 3 cut(s) | 587, 950, 962 |
| SsiI | CCGC | 4 cut(s) | 35, 386, 403, 816 |
| SspDI | GGCGCC | 1 cut(s) | 153 |
| SspMI | CTAG | 4 cut(s) | 693, 722, 1040, 1180 |
| StyD4I | CCNGG | 3 cut(s) | 110, 251, 997 |
| StyI | CCWWGG | 2 cut(s) | 426, 836 |
| TaaI | ACNGT | 5 cut(s) | 290, 465, 810, 877, 1148 |
| TaqI | TCGA | 4 cut(s) | 234, 241, 864, 1112 |
| TasI | AATT | 3 cut(s) | 587, 950, 962 |
| TatI | WGTACW | 1 cut(s) | 301 |
| TauI | GCSGC | 1 cut(s) | 388 |
| TfiI | GAWTC | 1 cut(s) | 484 |
| Tru1I | TTAA | 2 cut(s) | 285, 678 |
| Tru9I | TTAA | 2 cut(s) | 285, 678 |
| TscAI | CASTG | 2 cut(s) | 813, 973 |
| TseI | GCWGC | 2 cut(s) | 82, 943 |
| TspDTI | ATGAA | 2 cut(s) | 411, 642 |
| TspRI | CASTG | 2 cut(s) | 813, 973 |
| VneI | GTGCAC | 1 cut(s) | 804 |
| VpaK11BI | GGWCC | 4 cut(s) | 207, 352, 734, 1089 |
| XapI | RAATTY | 1 cut(s) | 962 |
| XceI | RCATGY | 3 cut(s) | 67, 385, 1009 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 424 |
| XspI | CTAG | 4 cut(s) | 693, 722, 1040, 1180 |