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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 521 |
| AccB1I | GGYRCC | 2 cut(s) | 935, 957 |
| AciI | CCGC | 3 cut(s) | 281, 842, 1095 |
| AclI | AACGTT | 1 cut(s) | 1083 |
| AclWI | GGATC | 1 cut(s) | 1202 |
| AcoI | YGGCCR | 2 cut(s) | 348, 1139 |
| AcsI | RAATTY | 4 cut(s) | 17, 494, 980, 1271 |
| AcuI | CTGAAG | 2 cut(s) | 584, 1353 |
| AcyI | GRCGYC | 1 cut(s) | 522 |
| AfaI | GTAC | 4 cut(s) | 334, 344, 567, 1385 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 418, 998, 1353 |
| AflIII | ACRYGT | 2 cut(s) | 384, 1380 |
| AgeI | ACCGGT | 1 cut(s) | 731 |
| AgsI | TTSAA | 4 cut(s) | 307, 559, 979, 1237 |
| AjiI | CACGTC | 1 cut(s) | 593 |
| AjnI | CCWGG | 2 cut(s) | 345, 1136 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 345, 371, 377, 403 |
| AleI | CACNNNNGTG | 2 cut(s) | 249, 1315 |
| AluBI | AGCT | 9 cut(s) | 163, 663, 748, 800, 834, 950, 1145, 1216, 1298 |
| AluI | AGCT | 9 cut(s) | 163, 663, 748, 800, 834, 950, 1145, 1216, 1298 |
| Alw21I | GWGCWC | 1 cut(s) | 718 |
| Alw26I | GTCTC | 3 cut(s) | 111, 501, 770 |
| AlwI | GGATC | 1 cut(s) | 1202 |
| AoxI | GGCC | 4 cut(s) | 348, 537, 1134, 1139 |
| ApeKI | GCWGC | 4 cut(s) | 748, 768, 950, 1414 |
| ApoI | RAATTY | 4 cut(s) | 17, 494, 980, 1271 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 34, 66 |
| AseI | ATTAAT | 1 cut(s) | 258 |
| AsiGI | ACCGGT | 1 cut(s) | 731 |
| AspS9I | GGNCC | 3 cut(s) | 538, 612, 866 |
| AsuHPI | GGTGA | 3 cut(s) | 236, 524, 623 |
| AvaII | GGWCC | 2 cut(s) | 612, 866 |
| BalI | TGGCCA | 1 cut(s) | 1141 |
| BanI | GGYRCC | 2 cut(s) | 935, 957 |
| BauI | CACGAG | 1 cut(s) | 835 |
| BbsI | GAAGAC | 2 cut(s) | 47, 1251 |
| Bbv12I | GWGCWC | 1 cut(s) | 718 |
| BbvI | GCAGC | 4 cut(s) | 735, 755, 937, 1426 |
| BccI | CCATC | 6 cut(s) | 89, 95, 207, 304, 643, 797 |
| BceAI | ACGGC | 2 cut(s) | 310, 976 |
| BciT130I | CCWGG | 2 cut(s) | 347, 1138 |
| BclI | TGATCA | 1 cut(s) | 130 |
| BcoDI | GTCTC | 3 cut(s) | 111, 501, 770 |
| BfaI | CTAG | 2 cut(s) | 1049, 1483 |
| BisI | GCNGC | 4 cut(s) | 749, 769, 951, 1415 |
| BlsI | GCNGC | 4 cut(s) | 750, 770, 952, 1416 |
| Bme1390I | CCNGG | 2 cut(s) | 347, 1138 |
| Bme18I | GGWCC | 2 cut(s) | 612, 866 |
| BmgBI | CACGTC | 1 cut(s) | 593 |
| BmgT120I | GGNCC | 3 cut(s) | 538, 612, 866 |
| BmiI | GGNNCC | 7 cut(s) | 148, 197, 367, 613, 868, 937, 959 |
| BmrFI | CCNGG | 2 cut(s) | 347, 1138 |
| BmrI | ACTGGG | 2 cut(s) | 42, 345 |
| BmuI | ACTGGG | 2 cut(s) | 42, 345 |
| BpiI | GAAGAC | 2 cut(s) | 47, 1251 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 705, 737 |
| BsaAI | YACGTR | 1 cut(s) | 1383 |
| BsaBI | GATNNNNATC | 1 cut(s) | 258 |
| BsaHI | GRCGYC | 1 cut(s) | 522 |
| BsaI | GGTCTC | 1 cut(s) | 111 |
| BsaWI | WCCGGW | 1 cut(s) | 731 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 418, 998, 1353 |
| Bse118I | RCCGGY | 2 cut(s) | 731, 1346 |
| Bse1I | ACTGG | 5 cut(s) | 48, 340, 856, 1093, 1473 |
| Bse3DI | GCAATG | 2 cut(s) | 71, 643 |
| Bse8I | GATNNNNATC | 1 cut(s) | 258 |
| BseBI | CCWGG | 2 cut(s) | 347, 1138 |
| BseGI | GGATG | 1 cut(s) | 8 |
| BseJI | GATNNNNATC | 1 cut(s) | 258 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 418, 998, 1353 |
| BseMI | GCAATG | 2 cut(s) | 71, 643 |
| BseNI | ACTGG | 5 cut(s) | 48, 340, 856, 1093, 1473 |
| BseRI | GAGGAG | 2 cut(s) | 519, 1460 |
| BseXI | GCAGC | 4 cut(s) | 735, 755, 937, 1426 |
| BsgI | GTGCAG | 2 cut(s) | 342, 754 |
| Bsh1285I | CGRYCG | 1 cut(s) | 783 |
| BshFI | GGCC | 4 cut(s) | 350, 539, 1136, 1141 |
| BshNI | GGYRCC | 2 cut(s) | 935, 957 |
| BshTI | ACCGGT | 1 cut(s) | 731 |
| BsiEI | CGRYCG | 1 cut(s) | 783 |
| BsiHKAI | GWGCWC | 1 cut(s) | 718 |
| BsiSI | CCGG | 2 cut(s) | 732, 1347 |
| BsiWI | CGTACG | 1 cut(s) | 1383 |
| BslFI | GGGAC | 4 cut(s) | 188, 804, 852, 1111 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 418, 998, 1353 |
| BsmAI | GTCTC | 3 cut(s) | 111, 501, 770 |
| BsmBI | CGTCTC | 2 cut(s) | 501, 770 |
| BsmFI | GGGAC | 4 cut(s) | 188, 804, 852, 1111 |
| BsnI | GGCC | 4 cut(s) | 350, 539, 1136, 1141 |
| Bso31I | GGTCTC | 1 cut(s) | 111 |
| Bsp1286I | GDGCHC | 1 cut(s) | 718 |
| Bsp143I | GATC | 3 cut(s) | 130, 545, 1207 |
| BspACI | CCGC | 3 cut(s) | 281, 842, 1095 |
| BspANI | GGCC | 4 cut(s) | 350, 539, 1136, 1141 |
| BspLI | GGNNCC | 7 cut(s) | 148, 197, 367, 613, 868, 937, 959 |
| BspPI | GGATC | 1 cut(s) | 1202 |
| BspT107I | GGYRCC | 2 cut(s) | 935, 957 |
| BspTNI | GGTCTC | 1 cut(s) | 111 |
| BsrDI | GCAATG | 2 cut(s) | 71, 643 |
| BsrFI | RCCGGY | 2 cut(s) | 731, 1346 |
| BsrI | ACTGG | 5 cut(s) | 48, 340, 856, 1093, 1473 |
| BssAI | RCCGGY | 2 cut(s) | 731, 1346 |
| BssMI | GATC | 3 cut(s) | 130, 545, 1207 |
| BssNI | GRCGYC | 1 cut(s) | 522 |
| BssSI | CACGAG | 1 cut(s) | 835 |
| Bst2BI | CACGAG | 1 cut(s) | 835 |
| Bst2UI | CCWGG | 2 cut(s) | 347, 1138 |
| Bst4CI | ACNGT | 6 cut(s) | 440, 512, 585, 622, 781, 1102 |
| Bst6I | CTCTTC | 2 cut(s) | 65, 696 |
| BstACI | GRCGYC | 1 cut(s) | 522 |
| BstBAI | YACGTR | 1 cut(s) | 1383 |
| BstC8I | GCNNGC | 3 cut(s) | 456, 1134, 1143 |
| BstF5I | GGATG | 1 cut(s) | 8 |
| BstKTI | GATC | 3 cut(s) | 133, 548, 1210 |
| BstMAI | GTCTC | 3 cut(s) | 111, 501, 770 |
| BstMBI | GATC | 3 cut(s) | 130, 545, 1207 |
| BstMCI | CGRYCG | 1 cut(s) | 783 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 1138, 1142, 1151, 1160, 1295 |
| BstNI | CCWGG | 2 cut(s) | 347, 1138 |
| BstNSI | RCATGY | 2 cut(s) | 458, 652 |
| BstSCI | CCNGG | 2 cut(s) | 345, 1136 |
| BstV1I | GCAGC | 4 cut(s) | 735, 755, 937, 1426 |
| BstV2I | GAAGAC | 2 cut(s) | 47, 1251 |
| BstX2I | RGATCY | 1 cut(s) | 1207 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1317 |
| BstYI | RGATCY | 1 cut(s) | 1207 |
| BsuRI | GGCC | 4 cut(s) | 350, 539, 1136, 1141 |
| BtrI | CACGTC | 1 cut(s) | 593 |
| BtsCI | GGATG | 1 cut(s) | 8 |
| BtsIMutI | CAGTG | 1 cut(s) | 590 |
| Cac8I | GCNNGC | 3 cut(s) | 456, 1134, 1143 |
| Cfr10I | RCCGGY | 2 cut(s) | 731, 1346 |
| Cfr13I | GGNCC | 3 cut(s) | 538, 612, 866 |
| CseI | GACGC | 3 cut(s) | 230, 511, 1160 |
| Csp6I | GTAC | 4 cut(s) | 333, 343, 566, 1384 |
| CspAI | ACCGGT | 1 cut(s) | 731 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 818, 853 |
| CviQI | GTAC | 4 cut(s) | 333, 343, 566, 1384 |
| DpnI | GATC | 3 cut(s) | 132, 547, 1209 |
| DpnII | GATC | 3 cut(s) | 130, 545, 1207 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 521 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 521 |
| EaeI | YGGCCR | 2 cut(s) | 348, 1139 |
| Eam1104I | CTCTTC | 2 cut(s) | 65, 696 |
| EarI | CTCTTC | 2 cut(s) | 65, 696 |
| EciI | GGCGGA | 1 cut(s) | 857 |
| Eco31I | GGTCTC | 1 cut(s) | 111 |
| Eco47I | GGWCC | 2 cut(s) | 612, 866 |
| Eco57I | CTGAAG | 2 cut(s) | 584, 1353 |
| EcoRII | CCWGG | 2 cut(s) | 345, 1136 |
| Esp3I | CGTCTC | 2 cut(s) | 501, 770 |
| FaqI | GGGAC | 4 cut(s) | 188, 804, 852, 1111 |
| FauI | CCCGC | 2 cut(s) | 288, 1088 |
| FbaI | TGATCA | 1 cut(s) | 130 |
| Fnu4HI | GCNGC | 4 cut(s) | 749, 769, 951, 1415 |
| Fsp4HI | GCNGC | 4 cut(s) | 749, 769, 951, 1415 |
| FspBI | CTAG | 2 cut(s) | 1049, 1483 |
| GluI | GCNGC | 4 cut(s) | 749, 769, 951, 1415 |
| HaeIII | GGCC | 4 cut(s) | 350, 539, 1136, 1141 |
| HapII | CCGG | 2 cut(s) | 732, 1347 |
| HgaI | GACGC | 3 cut(s) | 230, 511, 1160 |
| Hin1I | GRCGYC | 1 cut(s) | 522 |
| HincII | GTYRAC | 3 cut(s) | 118, 1242, 1342 |
| HindII | GTYRAC | 3 cut(s) | 118, 1242, 1342 |
| HinfI | GANTC | 5 cut(s) | 176, 314, 575, 739, 1109 |
| HpaI | GTTAAC | 2 cut(s) | 118, 1342 |
| HpaII | CCGG | 2 cut(s) | 732, 1347 |
| HphI | GGTGA | 3 cut(s) | 236, 524, 623 |
| Hpy166II | GTNNAC | 3 cut(s) | 118, 1242, 1342 |
| Hpy188I | TCNGA | 2 cut(s) | 1212, 1398 |
| Hpy188III | TCNNGA | 3 cut(s) | 134, 602, 1331 |
| Hpy8I | GTNNAC | 3 cut(s) | 118, 1242, 1342 |
| Hpy99I | CGWCG | 4 cut(s) | 140, 594, 643, 1154 |
| HpyAV | CCTTC | 3 cut(s) | 28, 137, 1479 |
| HpyCH4III | ACNGT | 6 cut(s) | 440, 512, 585, 622, 781, 1102 |
| HpyCH4IV | ACGT | 7 cut(s) | 386, 592, 912, 1083, 1323, 1382, 1386 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 1138, 1142, 1151, 1160, 1295 |
| HpySE526I | ACGT | 7 cut(s) | 386, 592, 912, 1083, 1323, 1382, 1386 |
| Hsp92I | GRCGYC | 1 cut(s) | 522 |
| Ksp22I | TGATCA | 1 cut(s) | 130 |
| KspAI | GTTAAC | 2 cut(s) | 118, 1342 |
| Kzo9I | GATC | 3 cut(s) | 130, 545, 1207 |
| LmnI | GCTCC | 3 cut(s) | 1221, 1295, 1447 |
| Lsp1109I | GCAGC | 4 cut(s) | 735, 755, 937, 1426 |
| MaeI | CTAG | 2 cut(s) | 1049, 1483 |
| MaeII | ACGT | 7 cut(s) | 386, 592, 912, 1083, 1323, 1382, 1386 |
| MaeIII | GTNAC | 5 cut(s) | 242, 407, 512, 913, 1084 |
| MalI | GATC | 3 cut(s) | 132, 547, 1209 |
| MboI | GATC | 3 cut(s) | 130, 545, 1207 |
| MboII | GAAGA | 8 cut(s) | 52, 52, 58, 319, 540, 685, 713, 1251 |
| MfeI | CAATTG | 1 cut(s) | 424 |
| MflI | RGATCY | 1 cut(s) | 1207 |
| MhlI | GDGCHC | 1 cut(s) | 718 |
| MlsI | TGGCCA | 1 cut(s) | 1141 |
| MluNI | TGGCCA | 1 cut(s) | 1141 |
| MlyI | GAGTC | 3 cut(s) | 170, 323, 733 |
| Mox20I | TGGCCA | 1 cut(s) | 1141 |
| MscI | TGGCCA | 1 cut(s) | 1141 |
| MseI | TTAA | 8 cut(s) | 117, 258, 300, 710, 786, 1199, 1341, 1437 |
| MslI | CAYNNNNRTG | 4 cut(s) | 138, 249, 911, 1315 |
| Msp20I | TGGCCA | 1 cut(s) | 1141 |
| MspI | CCGG | 2 cut(s) | 732, 1347 |
| MspR9I | CCNGG | 2 cut(s) | 347, 1138 |
| MunI | CAATTG | 1 cut(s) | 424 |
| MvaI | CCWGG | 2 cut(s) | 347, 1138 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 1138, 1142, 1151, 1160, 1295 |
| NdeII | GATC | 3 cut(s) | 130, 545, 1207 |
| NlaIV | GGNNCC | 7 cut(s) | 148, 197, 367, 613, 868, 937, 959 |
| NmuCI | GTSAC | 4 cut(s) | 242, 407, 512, 913 |
| NspI | RCATGY | 2 cut(s) | 458, 652 |
| OliI | CACNNNNGTG | 2 cut(s) | 249, 1315 |
| PaeI | GCATGC | 1 cut(s) | 458 |
| PfeI | GAWTC | 2 cut(s) | 575, 1109 |
| Pfl23II | CGTACG | 1 cut(s) | 1383 |
| PinAI | ACCGGT | 1 cut(s) | 731 |
| PkrI | GCNGC | 4 cut(s) | 750, 770, 952, 1416 |
| PleI | GAGTC | 3 cut(s) | 170, 322, 733 |
| PpsI | GAGTC | 3 cut(s) | 170, 322, 733 |
| Ppu21I | YACGTR | 1 cut(s) | 1383 |
| PshBI | ATTAAT | 1 cut(s) | 258 |
| Psp1406I | AACGTT | 1 cut(s) | 1083 |
| Psp6I | CCWGG | 2 cut(s) | 345, 1136 |
| PspGI | CCWGG | 2 cut(s) | 345, 1136 |
| PspLI | CGTACG | 1 cut(s) | 1383 |
| PspN4I | GGNNCC | 7 cut(s) | 148, 197, 367, 613, 868, 937, 959 |
| PspPI | GGNCC | 3 cut(s) | 538, 612, 866 |
| PsuI | RGATCY | 1 cut(s) | 1207 |
| RsaI | GTAC | 4 cut(s) | 334, 344, 567, 1385 |
| RsaNI | GTAC | 4 cut(s) | 333, 343, 566, 1384 |
| RseI | CAYNNNNRTG | 4 cut(s) | 138, 249, 911, 1315 |
| SaqAI | TTAA | 8 cut(s) | 117, 258, 300, 710, 786, 1199, 1341, 1437 |
| SatI | GCNGC | 4 cut(s) | 749, 769, 951, 1415 |
| Sau3AI | GATC | 3 cut(s) | 130, 545, 1207 |
| Sau96I | GGNCC | 3 cut(s) | 538, 612, 866 |
| SchI | GAGTC | 3 cut(s) | 170, 323, 733 |
| ScrFI | CCNGG | 2 cut(s) | 347, 1138 |
| SduI | GDGCHC | 1 cut(s) | 718 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1346 |
| SinI | GGWCC | 2 cut(s) | 612, 866 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 138, 249, 911, 1315 |
| SphI | GCATGC | 1 cut(s) | 458 |
| SsiI | CCGC | 3 cut(s) | 281, 842, 1095 |
| SspMI | CTAG | 2 cut(s) | 1049, 1483 |
| StyD4I | CCNGG | 2 cut(s) | 345, 1136 |
| TaaI | ACNGT | 6 cut(s) | 440, 512, 585, 622, 781, 1102 |
| TaiI | ACGT | 7 cut(s) | 389, 595, 915, 1086, 1326, 1385, 1389 |
| TaqI | TCGA | 2 cut(s) | 159, 551 |
| TaqII | GACCGA | 1 cut(s) | 854 |
| TfiI | GAWTC | 2 cut(s) | 575, 1109 |
| Tru1I | TTAA | 8 cut(s) | 117, 258, 300, 710, 786, 1199, 1341, 1437 |
| Tru9I | TTAA | 8 cut(s) | 117, 258, 300, 710, 786, 1199, 1341, 1437 |
| TscAI | CASTG | 1 cut(s) | 590 |
| TseFI | GTSAC | 4 cut(s) | 242, 407, 512, 913 |
| TseI | GCWGC | 4 cut(s) | 748, 768, 950, 1414 |
| Tsp45I | GTSAC | 4 cut(s) | 242, 407, 512, 913 |
| TspDTI | ATGAA | 5 cut(s) | 47, 52, 156, 923, 1271 |
| TspGWI | ACGGA | 2 cut(s) | 239, 1021 |
| TspRI | CASTG | 1 cut(s) | 590 |
| VpaK11BI | GGWCC | 2 cut(s) | 612, 866 |
| VspI | ATTAAT | 1 cut(s) | 258 |
| XapI | RAATTY | 4 cut(s) | 17, 494, 980, 1271 |
| XceI | RCATGY | 2 cut(s) | 458, 652 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1065 |
| XspI | CTAG | 2 cut(s) | 1049, 1483 |