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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 468 |
| AccBSI | CCGCTC | 1 cut(s) | 377 |
| AccII | CGCG | 1 cut(s) | 60 |
| AciI | CCGC | 8 cut(s) | 16, 32, 86, 305, 375, 392, 452, 582 |
| AfaI | GTAC | 3 cut(s) | 291, 588, 592 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 89, 468 |
| AgsI | TTSAA | 1 cut(s) | 284 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 257, 289 |
| AluBI | AGCT | 3 cut(s) | 78, 201, 608 |
| AluI | AGCT | 3 cut(s) | 78, 201, 608 |
| Alw21I | GWGCWC | 1 cut(s) | 80 |
| Alw26I | GTCTC | 3 cut(s) | 354, 449, 630 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 611 |
| AoxI | GGCC | 5 cut(s) | 3, 140, 159, 411, 424 |
| ApeKI | GCWGC | 5 cut(s) | 389, 562, 565, 608, 611 |
| AseI | ATTAAT | 1 cut(s) | 698 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 326 |
| AspLEI | GCGC | 1 cut(s) | 60 |
| AspS9I | GGNCC | 3 cut(s) | 140, 159, 411 |
| AsuC2I | CCSGG | 2 cut(s) | 104, 144 |
| AsuHPI | GGTGA | 1 cut(s) | 253 |
| BanII | GRGCYC | 1 cut(s) | 80 |
| BbsI | GAAGAC | 1 cut(s) | 488 |
| Bbv12I | GWGCWC | 1 cut(s) | 80 |
| BbvCI | CCTCAGC | 1 cut(s) | 447 |
| BbvI | GCAGC | 5 cut(s) | 401, 549, 552, 595, 598 |
| BccI | CCATC | 1 cut(s) | 245 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 378, 412 |
| BcnI | CCSGG | 2 cut(s) | 104, 144 |
| BcoDI | GTCTC | 3 cut(s) | 354, 449, 630 |
| BfaI | CTAG | 2 cut(s) | 198, 707 |
| BisI | GCNGC | 6 cut(s) | 375, 390, 563, 566, 609, 612 |
| BlsI | GCNGC | 6 cut(s) | 376, 391, 564, 567, 610, 613 |
| Bme1390I | CCNGG | 2 cut(s) | 104, 144 |
| BmgT120I | GGNCC | 3 cut(s) | 140, 159, 411 |
| BmiI | GGNNCC | 1 cut(s) | 323 |
| BmrFI | CCNGG | 2 cut(s) | 104, 144 |
| BmsI | GCATC | 2 cut(s) | 19, 331 |
| BpiI | GAAGAC | 1 cut(s) | 488 |
| BpmI | CTGGAG | 1 cut(s) | 294 |
| Bpu10I | CCTNAGC | 1 cut(s) | 447 |
| BpuMI | CCSGG | 2 cut(s) | 104, 144 |
| BsaAI | YACGTR | 1 cut(s) | 590 |
| BsaI | GGTCTC | 1 cut(s) | 449 |
| BsaJI | CCNNGG | 3 cut(s) | 6, 103, 427 |
| BsaWI | WCCGGW | 1 cut(s) | 118 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 32 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 89, 468 |
| Bse118I | RCCGGY | 1 cut(s) | 82 |
| Bse1I | ACTGG | 1 cut(s) | 311 |
| BseDI | CCNNGG | 3 cut(s) | 6, 103, 427 |
| BseGI | GGATG | 2 cut(s) | 34, 530 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 89, 468 |
| BseMII | CTCAG | 1 cut(s) | 438 |
| BseNI | ACTGG | 1 cut(s) | 311 |
| BseRI | GAGGAG | 1 cut(s) | 754 |
| BseXI | GCAGC | 5 cut(s) | 401, 549, 552, 595, 598 |
| Bsh1236I | CGCG | 1 cut(s) | 60 |
| Bsh1285I | CGRYCG | 1 cut(s) | 623 |
| BshFI | GGCC | 5 cut(s) | 5, 142, 161, 413, 426 |
| BsiEI | CGRYCG | 1 cut(s) | 623 |
| BsiHKAI | GWGCWC | 1 cut(s) | 80 |
| BsiSI | CCGG | 4 cut(s) | 83, 103, 119, 143 |
| BslFI | GGGAC | 1 cut(s) | 81 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 89, 468 |
| BsmAI | GTCTC | 3 cut(s) | 354, 449, 630 |
| BsmBI | CGTCTC | 2 cut(s) | 354, 630 |
| BsmFI | GGGAC | 1 cut(s) | 81 |
| BsmI | GAATGC | 1 cut(s) | 272 |
| BsnI | GGCC | 5 cut(s) | 5, 142, 161, 413, 426 |
| Bso31I | GGTCTC | 1 cut(s) | 449 |
| Bsp1286I | GDGCHC | 1 cut(s) | 80 |
| Bsp143I | GATC | 1 cut(s) | 542 |
| BspACI | CCGC | 8 cut(s) | 16, 32, 86, 305, 375, 392, 452, 582 |
| BspANI | GGCC | 5 cut(s) | 5, 142, 161, 413, 426 |
| BspCNI | CTCAG | 1 cut(s) | 439 |
| BspFNI | CGCG | 1 cut(s) | 60 |
| BspLI | GGNNCC | 1 cut(s) | 323 |
| BspTNI | GGTCTC | 1 cut(s) | 449 |
| BsrBI | CCGCTC | 1 cut(s) | 377 |
| BsrFI | RCCGGY | 1 cut(s) | 82 |
| BsrI | ACTGG | 1 cut(s) | 311 |
| BssAI | RCCGGY | 1 cut(s) | 82 |
| BssECI | CCNNGG | 3 cut(s) | 6, 103, 427 |
| BssMI | GATC | 1 cut(s) | 542 |
| Bst4CI | ACNGT | 3 cut(s) | 406, 686, 754 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 341 |
| BstBAI | YACGTR | 1 cut(s) | 590 |
| BstC8I | GCNNGC | 3 cut(s) | 80, 84, 187 |
| BstDEI | CTNAG | 2 cut(s) | 177, 447 |
| BstF5I | GGATG | 2 cut(s) | 34, 530 |
| BstFNI | CGCG | 1 cut(s) | 60 |
| BstHHI | GCGC | 1 cut(s) | 60 |
| BstKTI | GATC | 1 cut(s) | 545 |
| BstMAI | GTCTC | 3 cut(s) | 354, 449, 630 |
| BstMBI | GATC | 1 cut(s) | 542 |
| BstMCI | CGRYCG | 1 cut(s) | 623 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 341, 571 |
| BstNSI | RCATGY | 1 cut(s) | 101 |
| BstSCI | CCNGG | 2 cut(s) | 102, 142 |
| BstSNI | TACGTA | 1 cut(s) | 590 |
| BstUI | CGCG | 1 cut(s) | 60 |
| BstV1I | GCAGC | 5 cut(s) | 401, 549, 552, 595, 598 |
| BstV2I | GAAGAC | 1 cut(s) | 488 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 318 |
| BsuRI | GGCC | 5 cut(s) | 5, 142, 161, 413, 426 |
| BtsCI | GGATG | 2 cut(s) | 34, 530 |
| BtsIMutI | CAGTG | 2 cut(s) | 411, 691 |
| Cac8I | GCNNGC | 3 cut(s) | 80, 84, 187 |
| CaiI | CAGNNNCTG | 1 cut(s) | 611 |
| CfoI | GCGC | 1 cut(s) | 60 |
| Cfr10I | RCCGGY | 1 cut(s) | 82 |
| Cfr13I | GGNCC | 3 cut(s) | 140, 159, 411 |
| Csp6I | GTAC | 3 cut(s) | 290, 587, 591 |
| CviAII | CATG | 4 cut(s) | 98, 156, 418, 468 |
| CviQI | GTAC | 3 cut(s) | 290, 587, 591 |
| DdeI | CTNAG | 2 cut(s) | 177, 447 |
| DpnI | GATC | 1 cut(s) | 544 |
| DpnII | GATC | 1 cut(s) | 542 |
| EciI | GGCGGA | 2 cut(s) | 294, 467 |
| Ecl136II | GAGCTC | 1 cut(s) | 78 |
| Eco105I | TACGTA | 1 cut(s) | 590 |
| Eco24I | GRGCYC | 1 cut(s) | 80 |
| Eco31I | GGTCTC | 1 cut(s) | 449 |
| Eco53kI | GAGCTC | 1 cut(s) | 78 |
| EcoICRI | GAGCTC | 1 cut(s) | 78 |
| EcoT38I | GRGCYC | 1 cut(s) | 80 |
| Esp3I | CGTCTC | 2 cut(s) | 354, 630 |
| FaeI | CATG | 4 cut(s) | 101, 159, 421, 471 |
| FaiI | YATR | 6 cut(s) | 24, 99, 157, 419, 469, 554 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 363, 395 |
| FaqI | GGGAC | 1 cut(s) | 81 |
| FatI | CATG | 4 cut(s) | 97, 155, 417, 467 |
| FauI | CCCGC | 1 cut(s) | 589 |
| Fnu4HI | GCNGC | 6 cut(s) | 375, 390, 563, 566, 609, 612 |
| FokI | GGATG | 2 cut(s) | 41, 517 |
| FriOI | GRGCYC | 1 cut(s) | 80 |
| Fsp4HI | GCNGC | 6 cut(s) | 375, 390, 563, 566, 609, 612 |
| FspBI | CTAG | 2 cut(s) | 198, 707 |
| GlaI | GCGC | 1 cut(s) | 59 |
| GluI | GCNGC | 6 cut(s) | 375, 390, 563, 566, 609, 612 |
| GsuI | CTGGAG | 1 cut(s) | 294 |
| HaeIII | GGCC | 5 cut(s) | 5, 142, 161, 413, 426 |
| HapII | CCGG | 4 cut(s) | 83, 103, 119, 143 |
| HhaI | GCGC | 1 cut(s) | 60 |
| Hin1II | CATG | 4 cut(s) | 101, 159, 421, 471 |
| Hin6I | GCGC | 1 cut(s) | 58 |
| HinP1I | GCGC | 1 cut(s) | 58 |
| HinfI | GANTC | 2 cut(s) | 295, 395 |
| HpaII | CCGG | 4 cut(s) | 83, 103, 119, 143 |
| HphI | GGTGA | 1 cut(s) | 253 |
| Hpy166II | GTNNAC | 2 cut(s) | 593, 682 |
| Hpy188I | TCNGA | 5 cut(s) | 10, 75, 278, 542, 728 |
| Hpy8I | GTNNAC | 2 cut(s) | 593, 682 |
| Hpy99I | CGWCG | 1 cut(s) | 368 |
| HpyAV | CCTTC | 2 cut(s) | 87, 706 |
| HpyCH4III | ACNGT | 3 cut(s) | 406, 686, 754 |
| HpyCH4IV | ACGT | 3 cut(s) | 38, 256, 589 |
| HpyCH4V | TGCA | 3 cut(s) | 272, 335, 344 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 341, 571 |
| HpyF3I | CTNAG | 2 cut(s) | 177, 447 |
| HpySE526I | ACGT | 3 cut(s) | 38, 256, 589 |
| Hsp92II | CATG | 4 cut(s) | 101, 159, 421, 471 |
| HspAI | GCGC | 1 cut(s) | 58 |
| KroI | GCCGGC | 1 cut(s) | 82 |
| KroNI | GCCGGC | 1 cut(s) | 84 |
| Kzo9I | GATC | 1 cut(s) | 542 |
| LmnI | GCTCC | 1 cut(s) | 75 |
| LpnPI | CCDG | 6 cut(s) | 96, 116, 132, 156, 324, 338 |
| Lsp1109I | GCAGC | 5 cut(s) | 401, 549, 552, 595, 598 |
| LweI | GCATC | 2 cut(s) | 19, 331 |
| MaeI | CTAG | 2 cut(s) | 198, 707 |
| MaeII | ACGT | 3 cut(s) | 38, 256, 589 |
| MaeIII | GTNAC | 2 cut(s) | 34, 169 |
| MalI | GATC | 1 cut(s) | 544 |
| MbiI | CCGCTC | 1 cut(s) | 377 |
| MboI | GATC | 1 cut(s) | 542 |
| MboII | GAAGA | 2 cut(s) | 490, 493 |
| MhlI | GDGCHC | 1 cut(s) | 80 |
| MluCI | AATT | 3 cut(s) | 221, 300, 699 |
| MlyI | GAGTC | 2 cut(s) | 289, 404 |
| MmeI | TCCRAC | 1 cut(s) | 198 |
| MnlI | CCTC | 8 cut(s) | 4, 16, 172, 318, 402, 422, 442, 732 |
| MreI | CGCCGGCG | 1 cut(s) | 82 |
| MroNI | GCCGGC | 1 cut(s) | 82 |
| MroXI | GAANNNNTTC | 1 cut(s) | 326 |
| MseI | TTAA | 1 cut(s) | 698 |
| MslI | CAYNNNNRTG | 2 cut(s) | 27, 687 |
| MspA1I | CMGCKG | 3 cut(s) | 392, 584, 608 |
| MspI | CCGG | 4 cut(s) | 83, 103, 119, 143 |
| MspR9I | CCNGG | 2 cut(s) | 104, 144 |
| Mva1269I | GAATGC | 1 cut(s) | 272 |
| MvnI | CGCG | 1 cut(s) | 60 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 341, 571 |
| NaeI | GCCGGC | 1 cut(s) | 84 |
| NciI | CCSGG | 2 cut(s) | 104, 144 |
| NdeII | GATC | 1 cut(s) | 542 |
| NgoMIV | GCCGGC | 1 cut(s) | 82 |
| NlaIII | CATG | 4 cut(s) | 101, 159, 421, 471 |
| NlaIV | GGNNCC | 1 cut(s) | 323 |
| NmeAIII | GCCGAG | 1 cut(s) | 452 |
| NspI | RCATGY | 1 cut(s) | 101 |
| PctI | GAATGC | 1 cut(s) | 272 |
| PdiI | GCCGGC | 1 cut(s) | 84 |
| PdmI | GAANNNNTTC | 1 cut(s) | 326 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 468 |
| PkrI | GCNGC | 6 cut(s) | 376, 391, 564, 567, 610, 613 |
| PleI | GAGTC | 2 cut(s) | 289, 403 |
| PpsI | GAGTC | 2 cut(s) | 289, 403 |
| Ppu21I | YACGTR | 1 cut(s) | 590 |
| PshBI | ATTAAT | 1 cut(s) | 698 |
| Psp124BI | GAGCTC | 1 cut(s) | 80 |
| PspN4I | GGNNCC | 1 cut(s) | 323 |
| PspPI | GGNCC | 3 cut(s) | 140, 159, 411 |
| PstNI | CAGNNNCTG | 1 cut(s) | 611 |
| PvuII | CAGCTG | 1 cut(s) | 608 |
| RsaI | GTAC | 3 cut(s) | 291, 588, 592 |
| RsaNI | GTAC | 3 cut(s) | 290, 587, 591 |
| RseI | CAYNNNNRTG | 2 cut(s) | 27, 687 |
| SacI | GAGCTC | 1 cut(s) | 80 |
| SaqAI | TTAA | 1 cut(s) | 698 |
| SatI | GCNGC | 6 cut(s) | 375, 390, 563, 566, 609, 612 |
| Sau3AI | GATC | 1 cut(s) | 542 |
| Sau96I | GGNCC | 3 cut(s) | 140, 159, 411 |
| SchI | GAGTC | 2 cut(s) | 289, 404 |
| ScrFI | CCNGG | 2 cut(s) | 104, 144 |
| SduI | GDGCHC | 1 cut(s) | 80 |
| SetI | ASST | 9 cut(s) | 15, 41, 80, 203, 218, 259, 327, 592, 610 |
| SfaNI | GCATC | 2 cut(s) | 19, 331 |
| SgrAI | CRCCGGYG | 1 cut(s) | 82 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 27, 687 |
| SnaBI | TACGTA | 1 cut(s) | 590 |
| Sse9I | AATT | 3 cut(s) | 221, 300, 699 |
| SsiI | CCGC | 8 cut(s) | 16, 32, 86, 305, 375, 392, 452, 582 |
| SspMI | CTAG | 2 cut(s) | 198, 707 |
| SstI | GAGCTC | 1 cut(s) | 80 |
| StyD4I | CCNGG | 2 cut(s) | 102, 142 |
| TaaI | ACNGT | 3 cut(s) | 406, 686, 754 |
| TaiI | ACGT | 3 cut(s) | 41, 259, 592 |
| TaqI | TCGA | 3 cut(s) | 398, 476, 545 |
| TaqII | GACCGA | 1 cut(s) | 609 |
| TasI | AATT | 3 cut(s) | 221, 300, 699 |
| TatI | WGTACW | 1 cut(s) | 289 |
| TauI | GCSGC | 1 cut(s) | 377 |
| Tru1I | TTAA | 1 cut(s) | 698 |
| Tru9I | TTAA | 1 cut(s) | 698 |
| TscAI | CASTG | 2 cut(s) | 411, 691 |
| TseI | GCWGC | 5 cut(s) | 389, 562, 565, 608, 611 |
| TspDTI | ATGAA | 3 cut(s) | 144, 434, 692 |
| TspGWI | ACGGA | 1 cut(s) | 381 |
| TspRI | CASTG | 2 cut(s) | 411, 691 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 468 |
| VspI | ATTAAT | 1 cut(s) | 698 |
| XceI | RCATGY | 1 cut(s) | 101 |
| XmnI | GAANNNNTTC | 1 cut(s) | 326 |
| XspI | CTAG | 2 cut(s) | 198, 707 |