Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 99 |
| AccB1I | GGYRCC | 3 cut(s) | 223, 469, 847 |
| AciI | CCGC | 3 cut(s) | 212, 317, 685 |
| AclWI | GGATC | 2 cut(s) | 987, 1000 |
| AcoI | YGGCCR | 1 cut(s) | 547 |
| AcsI | RAATTY | 2 cut(s) | 854, 866 |
| AcuI | CTGAAG | 2 cut(s) | 945, 1053 |
| AfaI | GTAC | 2 cut(s) | 543, 1055 |
| AfeI | AGCGCT | 1 cut(s) | 874 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 24, 200, 466, 611, 698 |
| AgsI | TTSAA | 5 cut(s) | 281, 377, 559, 581, 806 |
| AjnI | CCWGG | 2 cut(s) | 23, 901 |
| AluBI | AGCT | 2 cut(s) | 649, 1082 |
| AluI | AGCT | 2 cut(s) | 649, 1082 |
| Alw21I | GWGCWC | 1 cut(s) | 387 |
| Alw26I | GTCTC | 1 cut(s) | 1030 |
| Alw44I | GTGCAC | 1 cut(s) | 383 |
| AlwI | GGATC | 2 cut(s) | 987, 1000 |
| Ama87I | CYCGRG | 1 cut(s) | 1057 |
| Aor51HI | AGCGCT | 1 cut(s) | 874 |
| AoxI | GGCC | 4 cut(s) | 547, 656, 750, 886 |
| ApaI | GGGCCC | 1 cut(s) | 754 |
| ApaLI | GTGCAC | 1 cut(s) | 383 |
| ApeKI | GCWGC | 2 cut(s) | 100, 190 |
| ApoI | RAATTY | 2 cut(s) | 854, 866 |
| AspLEI | GCGC | 2 cut(s) | 100, 875 |
| AspS9I | GGNCC | 8 cut(s) | 155, 493, 517, 632, 737, 750, 751, 886 |
| AsuHPI | GGTGA | 3 cut(s) | 518, 580, 673 |
| AvaI | CYCGRG | 1 cut(s) | 1057 |
| AvaII | GGWCC | 5 cut(s) | 155, 493, 517, 632, 737 |
| BaeGI | GKGCMC | 2 cut(s) | 387, 754 |
| BalI | TGGCCA | 1 cut(s) | 549 |
| BamHI | GGATCC | 1 cut(s) | 992 |
| BanI | GGYRCC | 3 cut(s) | 223, 469, 847 |
| BanII | GRGCYC | 2 cut(s) | 452, 754 |
| BbsI | GAAGAC | 1 cut(s) | 988 |
| Bbv12I | GWGCWC | 1 cut(s) | 387 |
| BbvI | GCAGC | 2 cut(s) | 112, 202 |
| BccI | CCATC | 7 cut(s) | 142, 194, 213, 332, 481, 558, 613 |
| BceAI | ACGGC | 1 cut(s) | 1029 |
| BciT130I | CCWGG | 2 cut(s) | 25, 903 |
| BclI | TGATCA | 1 cut(s) | 663 |
| BcoDI | GTCTC | 1 cut(s) | 1030 |
| BfaI | CTAG | 3 cut(s) | 693, 893, 1079 |
| BfmI | CTRYAG | 1 cut(s) | 133 |
| BfoI | RGCGCY | 1 cut(s) | 876 |
| BglII | AGATCT | 1 cut(s) | 118 |
| BisI | GCNGC | 2 cut(s) | 101, 191 |
| BlsI | GCNGC | 2 cut(s) | 102, 192 |
| Bme1390I | CCNGG | 2 cut(s) | 25, 903 |
| Bme18I | GGWCC | 5 cut(s) | 155, 493, 517, 632, 737 |
| BmeT110I | CYCGRG | 1 cut(s) | 1057 |
| BmgT120I | GGNCC | 8 cut(s) | 155, 493, 517, 632, 737, 750, 751, 886 |
| BmiI | GGNNCC | 8 cut(s) | 225, 471, 568, 633, 690, 752, 849, 994 |
| BmrFI | CCNGG | 2 cut(s) | 25, 903 |
| BmsI | GCATC | 4 cut(s) | 213, 343, 594, 1025 |
| BpiI | GAAGAC | 1 cut(s) | 988 |
| BpmI | CTGGAG | 1 cut(s) | 885 |
| Bpu10I | CCTNAGC | 1 cut(s) | 650 |
| BpuEI | CTTGAG | 2 cut(s) | 107, 971 |
| Bsa29I | ATCGAT | 1 cut(s) | 336 |
| BsaAI | YACGTR | 1 cut(s) | 509 |
| BsaI | GGTCTC | 1 cut(s) | 1030 |
| BsaJI | CCNNGG | 2 cut(s) | 158, 489 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 24, 200, 466, 611, 698 |
| Bse118I | RCCGGY | 2 cut(s) | 658, 919 |
| Bse1I | ACTGG | 5 cut(s) | 500, 519, 529, 722, 821 |
| Bse3DI | GCAATG | 3 cut(s) | 48, 64, 294 |
| BseBI | CCWGG | 2 cut(s) | 25, 903 |
| BseCI | ATCGAT | 1 cut(s) | 336 |
| BseDI | CCNNGG | 2 cut(s) | 158, 489 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 24, 200, 466, 611, 698 |
| BseMI | GCAATG | 3 cut(s) | 48, 64, 294 |
| BseMII | CTCAG | 3 cut(s) | 78, 206, 627 |
| BseNI | ACTGG | 5 cut(s) | 500, 519, 529, 722, 821 |
| BseRI | GAGGAG | 1 cut(s) | 850 |
| BseSI | GKGCMC | 2 cut(s) | 387, 754 |
| BseXI | GCAGC | 2 cut(s) | 112, 202 |
| Bsh1285I | CGRYCG | 1 cut(s) | 620 |
| BshFI | GGCC | 4 cut(s) | 549, 658, 752, 888 |
| BshNI | GGYRCC | 3 cut(s) | 223, 469, 847 |
| BshVI | ATCGAT | 1 cut(s) | 336 |
| BsiEI | CGRYCG | 1 cut(s) | 620 |
| BsiHKAI | GWGCWC | 1 cut(s) | 387 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1057 |
| BsiSI | CCGG | 2 cut(s) | 659, 920 |
| BslFI | GGGAC | 1 cut(s) | 716 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 24, 200, 466, 611, 698 |
| BsmAI | GTCTC | 1 cut(s) | 1030 |
| BsmFI | GGGAC | 1 cut(s) | 716 |
| BsnI | GGCC | 4 cut(s) | 549, 658, 752, 888 |
| Bso31I | GGTCTC | 1 cut(s) | 1030 |
| BsoBI | CYCGRG | 1 cut(s) | 1057 |
| Bsp120I | GGGCCC | 1 cut(s) | 750 |
| Bsp1286I | GDGCHC | 3 cut(s) | 387, 452, 754 |
| Bsp143I | GATC | 7 cut(s) | 118, 235, 617, 663, 755, 812, 992 |
| Bsp19I | CCATGG | 1 cut(s) | 158 |
| BspACI | CCGC | 3 cut(s) | 212, 317, 685 |
| BspANI | GGCC | 4 cut(s) | 549, 658, 752, 888 |
| BspCNI | CTCAG | 3 cut(s) | 79, 207, 628 |
| BspDI | ATCGAT | 1 cut(s) | 336 |
| BspHI | TCATGA | 1 cut(s) | 439 |
| BspLI | GGNNCC | 8 cut(s) | 225, 471, 568, 633, 690, 752, 849, 994 |
| BspMAI | CTGCAG | 1 cut(s) | 137 |
| BspPI | GGATC | 2 cut(s) | 987, 1000 |
| BspQI | GCTCTTC | 1 cut(s) | 440 |
| BspT107I | GGYRCC | 3 cut(s) | 223, 469, 847 |
| BspTNI | GGTCTC | 1 cut(s) | 1030 |
| BsrDI | GCAATG | 3 cut(s) | 48, 64, 294 |
| BsrFI | RCCGGY | 2 cut(s) | 658, 919 |
| BsrI | ACTGG | 5 cut(s) | 500, 519, 529, 722, 821 |
| BssAI | RCCGGY | 2 cut(s) | 658, 919 |
| BssECI | CCNNGG | 2 cut(s) | 158, 489 |
| BssMI | GATC | 7 cut(s) | 118, 235, 617, 663, 755, 812, 992 |
| BssT1I | CCWWGG | 1 cut(s) | 158 |
| Bst2UI | CCWGG | 2 cut(s) | 25, 903 |
| Bst4CI | ACNGT | 7 cut(s) | 276, 313, 481, 490, 682, 737, 1048 |
| Bst6I | CTCTTC | 2 cut(s) | 440, 968 |
| BstBAI | YACGTR | 1 cut(s) | 509 |
| BstC8I | GCNNGC | 6 cut(s) | 45, 55, 319, 647, 921, 1064 |
| BstDEI | CTNAG | 5 cut(s) | 87, 215, 636, 650, 876 |
| BstDSI | CCRYGG | 2 cut(s) | 158, 489 |
| BstH2I | RGCGCY | 1 cut(s) | 876 |
| BstHHI | GCGC | 2 cut(s) | 100, 875 |
| BstKTI | GATC | 7 cut(s) | 121, 238, 620, 666, 758, 815, 995 |
| BstMAI | GTCTC | 1 cut(s) | 1030 |
| BstMBI | GATC | 7 cut(s) | 118, 235, 617, 663, 755, 812, 992 |
| BstMCI | CGRYCG | 1 cut(s) | 620 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 305, 314, 655, 749 |
| BstNI | CCWGG | 2 cut(s) | 25, 903 |
| BstNSI | RCATGY | 1 cut(s) | 415 |
| BstSCI | CCNGG | 2 cut(s) | 23, 901 |
| BstSFI | CTRYAG | 1 cut(s) | 133 |
| BstSLI | GKGCMC | 2 cut(s) | 387, 754 |
| BstV1I | GCAGC | 2 cut(s) | 112, 202 |
| BstV2I | GAAGAC | 1 cut(s) | 988 |
| BstX2I | RGATCY | 2 cut(s) | 118, 992 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 536 |
| BstYI | RGATCY | 2 cut(s) | 118, 992 |
| Bsu15I | ATCGAT | 1 cut(s) | 336 |
| BsuRI | GGCC | 4 cut(s) | 549, 658, 752, 888 |
| BsuTUI | ATCGAT | 1 cut(s) | 336 |
| BtgI | CCRYGG | 2 cut(s) | 158, 489 |
| BtgZI | GCGATG | 1 cut(s) | 190 |
| Cac8I | GCNNGC | 6 cut(s) | 45, 55, 319, 647, 921, 1064 |
| CciI | TCATGA | 1 cut(s) | 439 |
| CfoI | GCGC | 2 cut(s) | 100, 875 |
| Cfr10I | RCCGGY | 2 cut(s) | 658, 919 |
| Cfr13I | GGNCC | 8 cut(s) | 155, 493, 517, 632, 737, 750, 751, 886 |
| ClaI | ATCGAT | 1 cut(s) | 336 |
| Csp6I | GTAC | 2 cut(s) | 542, 1054 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 25, 60, 759, 794 |
| CviAII | CATG | 7 cut(s) | 82, 159, 412, 440, 466, 545, 592 |
| CviQI | GTAC | 2 cut(s) | 542, 1054 |
| DdeI | CTNAG | 5 cut(s) | 87, 215, 636, 650, 876 |
| DpnI | GATC | 7 cut(s) | 120, 237, 619, 665, 757, 814, 994 |
| DpnII | GATC | 7 cut(s) | 118, 235, 617, 663, 755, 812, 992 |
| EaeI | YGGCCR | 1 cut(s) | 547 |
| Eam1104I | CTCTTC | 2 cut(s) | 440, 968 |
| EarI | CTCTTC | 2 cut(s) | 440, 968 |
| Eco130I | CCWWGG | 1 cut(s) | 158 |
| Eco24I | GRGCYC | 2 cut(s) | 452, 754 |
| Eco31I | GGTCTC | 1 cut(s) | 1030 |
| Eco47I | GGWCC | 5 cut(s) | 155, 493, 517, 632, 737 |
| Eco47III | AGCGCT | 1 cut(s) | 874 |
| Eco57I | CTGAAG | 2 cut(s) | 945, 1053 |
| Eco88I | CYCGRG | 1 cut(s) | 1057 |
| EcoO109I | RGGNCCY | 2 cut(s) | 632, 750 |
| EcoRI | GAATTC | 1 cut(s) | 854 |
| EcoRII | CCWGG | 2 cut(s) | 23, 901 |
| EcoT14I | CCWWGG | 1 cut(s) | 158 |
| EcoT38I | GRGCYC | 2 cut(s) | 452, 754 |
| ErhI | CCWWGG | 1 cut(s) | 158 |
| FaeI | CATG | 7 cut(s) | 85, 162, 415, 443, 469, 548, 595 |
| FaqI | GGGAC | 1 cut(s) | 716 |
| FatI | CATG | 7 cut(s) | 81, 158, 411, 439, 465, 544, 591 |
| FauI | CCCGC | 2 cut(s) | 310, 678 |
| FbaI | TGATCA | 1 cut(s) | 663 |
| Fnu4HI | GCNGC | 2 cut(s) | 101, 191 |
| FriOI | GRGCYC | 2 cut(s) | 452, 754 |
| Fsp4HI | GCNGC | 2 cut(s) | 101, 191 |
| FspBI | CTAG | 3 cut(s) | 693, 893, 1079 |
| FspI | TGCGCA | 1 cut(s) | 99 |
| GlaI | GCGC | 2 cut(s) | 99, 874 |
| GluI | GCNGC | 2 cut(s) | 101, 191 |
| GsuI | CTGGAG | 1 cut(s) | 885 |
| HaeII | RGCGCY | 1 cut(s) | 876 |
| HaeIII | GGCC | 4 cut(s) | 549, 658, 752, 888 |
| HapII | CCGG | 2 cut(s) | 659, 920 |
| HhaI | GCGC | 2 cut(s) | 100, 875 |
| Hin1II | CATG | 7 cut(s) | 85, 162, 415, 443, 469, 548, 595 |
| Hin6I | GCGC | 2 cut(s) | 98, 873 |
| HinP1I | GCGC | 2 cut(s) | 98, 873 |
| HinfI | GANTC | 4 cut(s) | 14, 367, 638, 704 |
| HpaII | CCGG | 2 cut(s) | 659, 920 |
| HphI | GGTGA | 3 cut(s) | 518, 580, 673 |
| Hpy166II | GTNNAC | 3 cut(s) | 385, 493, 512 |
| Hpy188I | TCNGA | 1 cut(s) | 796 |
| Hpy188III | TCNNGA | 7 cut(s) | 124, 329, 377, 440, 635, 787, 893 |
| Hpy8I | GTNNAC | 3 cut(s) | 385, 493, 512 |
| HpyAV | CCTTC | 4 cut(s) | 133, 800, 899, 1015 |
| HpyCH4III | ACNGT | 7 cut(s) | 276, 313, 481, 490, 682, 737, 1048 |
| HpyCH4IV | ACGT | 2 cut(s) | 63, 508 |
| HpyCH4V | TGCA | 9 cut(s) | 53, 135, 190, 299, 385, 456, 506, 781, 965 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 305, 314, 655, 749 |
| HpyF3I | CTNAG | 5 cut(s) | 87, 215, 636, 650, 876 |
| HpySE526I | ACGT | 2 cut(s) | 63, 508 |
| Hsp92II | CATG | 7 cut(s) | 85, 162, 415, 443, 469, 548, 595 |
| HspAI | GCGC | 2 cut(s) | 98, 873 |
| KroI | GCCGGC | 1 cut(s) | 919 |
| KroNI | GCCGGC | 1 cut(s) | 921 |
| Ksp22I | TGATCA | 1 cut(s) | 663 |
| Kzo9I | GATC | 7 cut(s) | 118, 235, 617, 663, 755, 812, 992 |
| LguI | GCTCTTC | 1 cut(s) | 440 |
| Lsp1109I | GCAGC | 2 cut(s) | 112, 202 |
| LweI | GCATC | 4 cut(s) | 213, 343, 594, 1025 |
| MaeI | CTAG | 3 cut(s) | 693, 893, 1079 |
| MaeII | ACGT | 2 cut(s) | 63, 508 |
| MaeIII | GTNAC | 2 cut(s) | 19, 128 |
| MalI | GATC | 7 cut(s) | 120, 237, 619, 665, 757, 814, 994 |
| MboI | GATC | 7 cut(s) | 118, 235, 617, 663, 755, 812, 992 |
| MboII | GAAGA | 7 cut(s) | 235, 457, 822, 982, 985, 993, 1046 |
| MflI | RGATCY | 2 cut(s) | 118, 992 |
| MhlI | GDGCHC | 3 cut(s) | 387, 452, 754 |
| MlsI | TGGCCA | 1 cut(s) | 549 |
| MluCI | AATT | 3 cut(s) | 776, 854, 866 |
| MluNI | TGGCCA | 1 cut(s) | 549 |
| MlyI | GAGTC | 3 cut(s) | 8, 647, 698 |
| Mox20I | TGGCCA | 1 cut(s) | 549 |
| MroNI | GCCGGC | 1 cut(s) | 919 |
| MscI | TGGCCA | 1 cut(s) | 549 |
| MseI | TTAA | 1 cut(s) | 168 |
| MslI | CAYNNNNRTG | 1 cut(s) | 590 |
| Msp20I | TGGCCA | 1 cut(s) | 549 |
| MspA1I | CMGCKG | 1 cut(s) | 214 |
| MspI | CCGG | 2 cut(s) | 659, 920 |
| MspR9I | CCNGG | 2 cut(s) | 25, 903 |
| MvaI | CCWGG | 2 cut(s) | 25, 903 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 305, 314, 655, 749 |
| NaeI | GCCGGC | 1 cut(s) | 921 |
| NcoI | CCATGG | 1 cut(s) | 158 |
| NdeII | GATC | 7 cut(s) | 118, 235, 617, 663, 755, 812, 992 |
| NgoMIV | GCCGGC | 1 cut(s) | 919 |
| NlaIII | CATG | 7 cut(s) | 85, 162, 415, 443, 469, 548, 595 |
| NlaIV | GGNNCC | 8 cut(s) | 225, 471, 568, 633, 690, 752, 849, 994 |
| NmuCI | GTSAC | 1 cut(s) | 128 |
| NsbI | TGCGCA | 1 cut(s) | 99 |
| NspI | RCATGY | 1 cut(s) | 415 |
| PagI | TCATGA | 1 cut(s) | 439 |
| PciSI | GCTCTTC | 1 cut(s) | 440 |
| PdiI | GCCGGC | 1 cut(s) | 921 |
| PfeI | GAWTC | 1 cut(s) | 367 |
| PfoI | TCCNGGA | 1 cut(s) | 901 |
| PkrI | GCNGC | 2 cut(s) | 102, 192 |
| Ple19I | CGATCG | 1 cut(s) | 620 |
| PleI | GAGTC | 3 cut(s) | 8, 646, 698 |
| PpsI | GAGTC | 3 cut(s) | 8, 646, 698 |
| Ppu21I | YACGTR | 1 cut(s) | 509 |
| PpuMI | RGGWCCY | 1 cut(s) | 632 |
| Psp5II | RGGWCCY | 1 cut(s) | 632 |
| Psp6I | CCWGG | 2 cut(s) | 23, 901 |
| PspGI | CCWGG | 2 cut(s) | 23, 901 |
| PspN4I | GGNNCC | 8 cut(s) | 225, 471, 568, 633, 690, 752, 849, 994 |
| PspOMI | GGGCCC | 1 cut(s) | 750 |
| PspPI | GGNCC | 8 cut(s) | 155, 493, 517, 632, 737, 750, 751, 886 |
| PspPPI | RGGWCCY | 1 cut(s) | 632 |
| PstI | CTGCAG | 1 cut(s) | 137 |
| PsuI | RGATCY | 2 cut(s) | 118, 992 |
| PvuI | CGATCG | 1 cut(s) | 620 |
| RsaI | GTAC | 2 cut(s) | 543, 1055 |
| RsaNI | GTAC | 2 cut(s) | 542, 1054 |
| RseI | CAYNNNNRTG | 1 cut(s) | 590 |
| SapI | GCTCTTC | 1 cut(s) | 440 |
| SaqAI | TTAA | 1 cut(s) | 168 |
| SatI | GCNGC | 2 cut(s) | 101, 191 |
| Sau3AI | GATC | 7 cut(s) | 118, 235, 617, 663, 755, 812, 992 |
| Sau96I | GGNCC | 8 cut(s) | 155, 493, 517, 632, 737, 750, 751, 886 |
| SchI | GAGTC | 3 cut(s) | 8, 647, 698 |
| ScrFI | CCNGG | 2 cut(s) | 25, 903 |
| SduI | GDGCHC | 3 cut(s) | 387, 452, 754 |
| SfaNI | GCATC | 4 cut(s) | 213, 343, 594, 1025 |
| SfcI | CTRYAG | 1 cut(s) | 133 |
| SinI | GGWCC | 5 cut(s) | 155, 493, 517, 632, 737 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 590 |
| SmlI | CTYRAG | 2 cut(s) | 122, 950 |
| SmoI | CTYRAG | 2 cut(s) | 122, 950 |
| Sse9I | AATT | 3 cut(s) | 776, 854, 866 |
| SsiI | CCGC | 3 cut(s) | 212, 317, 685 |
| SspMI | CTAG | 3 cut(s) | 693, 893, 1079 |
| StyD4I | CCNGG | 2 cut(s) | 23, 901 |
| StyI | CCWWGG | 1 cut(s) | 158 |
| TaaI | ACNGT | 7 cut(s) | 276, 313, 481, 490, 682, 737, 1048 |
| TaiI | ACGT | 2 cut(s) | 66, 511 |
| TaqI | TCGA | 5 cut(s) | 12, 336, 616, 863, 1019 |
| TasI | AATT | 3 cut(s) | 776, 854, 866 |
| TatI | WGTACW | 2 cut(s) | 541, 1053 |
| TfiI | GAWTC | 1 cut(s) | 367 |
| Tru1I | TTAA | 1 cut(s) | 168 |
| Tru9I | TTAA | 1 cut(s) | 168 |
| TseFI | GTSAC | 1 cut(s) | 128 |
| TseI | GCWGC | 2 cut(s) | 100, 190 |
| Tsp45I | GTSAC | 1 cut(s) | 128 |
| TspDTI | ATGAA | 2 cut(s) | 411, 428 |
| TspGWI | ACGGA | 1 cut(s) | 7 |
| VneI | GTGCAC | 1 cut(s) | 383 |
| VpaK11BI | GGWCC | 5 cut(s) | 155, 493, 517, 632, 737 |
| XapI | RAATTY | 2 cut(s) | 854, 866 |
| XbaI | TCTAGA | 1 cut(s) | 892 |
| XceI | RCATGY | 1 cut(s) | 415 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 301 |
| XspI | CTAG | 3 cut(s) | 693, 893, 1079 |