ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 650 |
| AccIII | TCCGGA | 1 cut(s) | 352 |
| AciI | CCGC | 1 cut(s) | 378 |
| AclWI | GGATC | 5 cut(s) | 13, 281, 344, 495, 691 |
| AcoI | YGGCCR | 1 cut(s) | 206 |
| AfaI | GTAC | 2 cut(s) | 476, 582 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 34, 113, 680, 695 |
| AgsI | TTSAA | 2 cut(s) | 193, 635 |
| AjnI | CCWGG | 2 cut(s) | 30, 410 |
| AluBI | AGCT | 4 cut(s) | 129, 432, 577, 606 |
| AluI | AGCT | 4 cut(s) | 129, 432, 577, 606 |
| AlwI | GGATC | 5 cut(s) | 13, 281, 344, 495, 691 |
| Aor13HI | TCCGGA | 1 cut(s) | 352 |
| AoxI | GGCC | 2 cut(s) | 163, 206 |
| ApeKI | GCWGC | 1 cut(s) | 368 |
| AspS9I | GGNCC | 4 cut(s) | 164, 259, 585, 781 |
| AsuC2I | CCSGG | 1 cut(s) | 210 |
| AvaII | GGWCC | 3 cut(s) | 259, 585, 781 |
| AxyI | CCTNAGG | 1 cut(s) | 675 |
| BauI | CACGAG | 1 cut(s) | 646 |
| BbvI | GCAGC | 1 cut(s) | 355 |
| BccI | CCATC | 1 cut(s) | 587 |
| BceAI | ACGGC | 1 cut(s) | 356 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 36 |
| BciT130I | CCWGG | 2 cut(s) | 32, 412 |
| BcnI | CCSGG | 1 cut(s) | 210 |
| BfaI | CTAG | 1 cut(s) | 459 |
| BfuAI | ACCTGC | 1 cut(s) | 650 |
| BisI | GCNGC | 1 cut(s) | 369 |
| BlsI | GCNGC | 1 cut(s) | 370 |
| Bme1390I | CCNGG | 3 cut(s) | 32, 210, 412 |
| Bme18I | GGWCC | 3 cut(s) | 259, 585, 781 |
| BmgT120I | GGNCC | 4 cut(s) | 164, 259, 585, 781 |
| BmiI | GGNNCC | 3 cut(s) | 85, 234, 260 |
| BmrFI | CCNGG | 3 cut(s) | 32, 210, 412 |
| BmrI | ACTGGG | 1 cut(s) | 279 |
| BmsI | GCATC | 4 cut(s) | 32, 55, 355, 758 |
| BmuI | ACTGGG | 1 cut(s) | 279 |
| BpmI | CTGGAG | 2 cut(s) | 53, 302 |
| BpuMI | CCSGG | 1 cut(s) | 210 |
| BsaJI | CCNNGG | 4 cut(s) | 167, 209, 402, 588 |
| BsaWI | WCCGGW | 1 cut(s) | 352 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 34, 113, 680, 695 |
| Bse1I | ACTGG | 3 cut(s) | 274, 285, 453 |
| Bse21I | CCTNAGG | 1 cut(s) | 675 |
| BseAI | TCCGGA | 1 cut(s) | 352 |
| BseBI | CCWGG | 2 cut(s) | 32, 412 |
| BseDI | CCNNGG | 4 cut(s) | 167, 209, 402, 588 |
| BseGI | GGATG | 4 cut(s) | 23, 58, 515, 598 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 34, 113, 680, 695 |
| BseMII | CTCAG | 3 cut(s) | 125, 199, 333 |
| BseNI | ACTGG | 3 cut(s) | 274, 285, 453 |
| BseXI | GCAGC | 1 cut(s) | 355 |
| BsgI | GTGCAG | 1 cut(s) | 628 |
| BshFI | GGCC | 2 cut(s) | 165, 208 |
| BsiSI | CCGG | 3 cut(s) | 209, 353, 689 |
| BslFI | GGGAC | 1 cut(s) | 541 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 34, 113, 680, 695 |
| BsmFI | GGGAC | 1 cut(s) | 541 |
| BsmI | GAATGC | 1 cut(s) | 307 |
| BsnI | GGCC | 2 cut(s) | 165, 208 |
| Bsp13I | TCCGGA | 1 cut(s) | 352 |
| Bsp1407I | TGTACA | 1 cut(s) | 474 |
| Bsp143I | GATC | 6 cut(s) | 5, 13, 273, 349, 487, 683 |
| Bsp19I | CCATGG | 2 cut(s) | 167, 402 |
| BspACI | CCGC | 1 cut(s) | 378 |
| BspANI | GGCC | 2 cut(s) | 165, 208 |
| BspCNI | CTCAG | 3 cut(s) | 126, 198, 332 |
| BspEI | TCCGGA | 1 cut(s) | 352 |
| BspLI | GGNNCC | 3 cut(s) | 85, 234, 260 |
| BspMI | ACCTGC | 1 cut(s) | 650 |
| BspPI | GGATC | 5 cut(s) | 13, 281, 344, 495, 691 |
| BsrGI | TGTACA | 1 cut(s) | 474 |
| BsrI | ACTGG | 3 cut(s) | 274, 285, 453 |
| BssECI | CCNNGG | 4 cut(s) | 167, 209, 402, 588 |
| BssMI | GATC | 6 cut(s) | 5, 13, 273, 349, 487, 683 |
| BssSI | CACGAG | 1 cut(s) | 646 |
| BssT1I | CCWWGG | 3 cut(s) | 167, 402, 588 |
| Bst2BI | CACGAG | 1 cut(s) | 646 |
| Bst2UI | CCWGG | 2 cut(s) | 32, 412 |
| Bst4CI | ACNGT | 1 cut(s) | 781 |
| Bst6I | CTCTTC | 2 cut(s) | 426, 740 |
| BstAUI | TGTACA | 1 cut(s) | 474 |
| BstDEI | CTNAG | 6 cut(s) | 69, 134, 185, 319, 552, 675 |
| BstDSI | CCRYGG | 2 cut(s) | 167, 402 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 32 |
| BstF5I | GGATG | 4 cut(s) | 23, 58, 515, 598 |
| BstKTI | GATC | 6 cut(s) | 8, 16, 276, 352, 490, 686 |
| BstMBI | GATC | 6 cut(s) | 5, 13, 273, 349, 487, 683 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 92, 574, 603 |
| BstNI | CCWGG | 2 cut(s) | 32, 412 |
| BstNSI | RCATGY | 1 cut(s) | 176 |
| BstSCI | CCNGG | 3 cut(s) | 30, 208, 410 |
| BstV1I | GCAGC | 1 cut(s) | 355 |
| BstX2I | RGATCY | 2 cut(s) | 5, 487 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 269 |
| BstYI | RGATCY | 2 cut(s) | 5, 487 |
| Bsu36I | CCTNAGG | 1 cut(s) | 675 |
| BsuRI | GGCC | 2 cut(s) | 165, 208 |
| BtgI | CCRYGG | 2 cut(s) | 167, 402 |
| BtsCI | GGATG | 4 cut(s) | 23, 58, 515, 598 |
| BtsIMutI | CAGTG | 2 cut(s) | 209, 278 |
| BveI | ACCTGC | 1 cut(s) | 650 |
| Cfr13I | GGNCC | 4 cut(s) | 164, 259, 585, 781 |
| Csp6I | GTAC | 2 cut(s) | 475, 581 |
| CviAII | CATG | 7 cut(s) | 168, 173, 217, 295, 403, 472, 527 |
| CviQI | GTAC | 2 cut(s) | 475, 581 |
| DdeI | CTNAG | 6 cut(s) | 69, 134, 185, 319, 552, 675 |
| DpnI | GATC | 6 cut(s) | 7, 15, 275, 351, 489, 685 |
| DpnII | GATC | 6 cut(s) | 5, 13, 273, 349, 487, 683 |
| EaeI | YGGCCR | 1 cut(s) | 206 |
| Eam1104I | CTCTTC | 2 cut(s) | 426, 740 |
| EarI | CTCTTC | 2 cut(s) | 426, 740 |
| Eco130I | CCWWGG | 3 cut(s) | 167, 402, 588 |
| Eco47I | GGWCC | 3 cut(s) | 259, 585, 781 |
| Eco81I | CCTNAGG | 1 cut(s) | 675 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 32 |
| EcoRII | CCWGG | 2 cut(s) | 30, 410 |
| EcoT14I | CCWWGG | 3 cut(s) | 167, 402, 588 |
| ErhI | CCWWGG | 3 cut(s) | 167, 402, 588 |
| FaeI | CATG | 7 cut(s) | 171, 176, 220, 298, 406, 475, 530 |
| FaqI | GGGAC | 1 cut(s) | 541 |
| FatI | CATG | 7 cut(s) | 167, 172, 216, 294, 402, 471, 526 |
| FauNDI | CATATG | 1 cut(s) | 243 |
| Fnu4HI | GCNGC | 1 cut(s) | 369 |
| FokI | GGATG | 4 cut(s) | 10, 65, 522, 605 |
| Fsp4HI | GCNGC | 1 cut(s) | 369 |
| FspBI | CTAG | 1 cut(s) | 459 |
| GluI | GCNGC | 1 cut(s) | 369 |
| GsuI | CTGGAG | 2 cut(s) | 53, 302 |
| HaeIII | GGCC | 2 cut(s) | 165, 208 |
| HapII | CCGG | 3 cut(s) | 209, 353, 689 |
| Hin1II | CATG | 7 cut(s) | 171, 176, 220, 298, 406, 475, 530 |
| HindIII | AAGCTT | 1 cut(s) | 430 |
| HinfI | GANTC | 7 cut(s) | 38, 73, 309, 407, 468, 613, 720 |
| HpaII | CCGG | 3 cut(s) | 209, 353, 689 |
| Hpy166II | GTNNAC | 1 cut(s) | 784 |
| Hpy188I | TCNGA | 4 cut(s) | 135, 322, 389, 658 |
| Hpy188III | TCNNGA | 3 cut(s) | 11, 353, 494 |
| Hpy8I | GTNNAC | 1 cut(s) | 784 |
| HpyCH4III | ACNGT | 1 cut(s) | 781 |
| HpyCH4IV | ACGT | 1 cut(s) | 195 |
| HpyCH4V | TGCA | 4 cut(s) | 23, 456, 543, 645 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 92, 574, 603 |
| HpyF3I | CTNAG | 6 cut(s) | 69, 134, 185, 319, 552, 675 |
| HpySE526I | ACGT | 1 cut(s) | 195 |
| Hsp92II | CATG | 7 cut(s) | 171, 176, 220, 298, 406, 475, 530 |
| Kpn2I | TCCGGA | 1 cut(s) | 352 |
| Kzo9I | GATC | 6 cut(s) | 5, 13, 273, 349, 487, 683 |
| LmnI | GCTCC | 2 cut(s) | 83, 611 |
| Lsp1109I | GCAGC | 1 cut(s) | 355 |
| LweI | GCATC | 4 cut(s) | 32, 55, 355, 758 |
| MaeI | CTAG | 1 cut(s) | 459 |
| MaeII | ACGT | 1 cut(s) | 195 |
| MaeIII | GTNAC | 1 cut(s) | 775 |
| MalI | GATC | 6 cut(s) | 7, 15, 275, 351, 489, 685 |
| MboI | GATC | 6 cut(s) | 5, 13, 273, 349, 487, 683 |
| MboII | GAAGA | 7 cut(s) | 298, 310, 413, 482, 545, 727, 730 |
| MfeI | CAATTG | 1 cut(s) | 222 |
| MflI | RGATCY | 2 cut(s) | 5, 487 |
| MluCI | AATT | 3 cut(s) | 222, 264, 692 |
| MlyI | GAGTC | 2 cut(s) | 303, 477 |
| MmeI | TCCRAC | 1 cut(s) | 693 |
| MnlI | CCTC | 9 cut(s) | 28, 38, 152, 223, 429, 453, 478, 676, 739 |
| MroI | TCCGGA | 1 cut(s) | 352 |
| MseI | TTAA | 2 cut(s) | 123, 393 |
| MslI | CAYNNNNRTG | 1 cut(s) | 51 |
| MspA1I | CMGCKG | 1 cut(s) | 577 |
| MspI | CCGG | 3 cut(s) | 209, 353, 689 |
| MspR9I | CCNGG | 3 cut(s) | 32, 210, 412 |
| MunI | CAATTG | 1 cut(s) | 222 |
| Mva1269I | GAATGC | 1 cut(s) | 307 |
| MvaI | CCWGG | 2 cut(s) | 32, 412 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 92, 574, 603 |
| NciI | CCSGG | 1 cut(s) | 210 |
| NcoI | CCATGG | 2 cut(s) | 167, 402 |
| NdeI | CATATG | 1 cut(s) | 243 |
| NdeII | GATC | 6 cut(s) | 5, 13, 273, 349, 487, 683 |
| NlaIII | CATG | 7 cut(s) | 171, 176, 220, 298, 406, 475, 530 |
| NlaIV | GGNNCC | 3 cut(s) | 85, 234, 260 |
| NmuCI | GTSAC | 1 cut(s) | 775 |
| NspI | RCATGY | 1 cut(s) | 176 |
| PctI | GAATGC | 1 cut(s) | 307 |
| PfeI | GAWTC | 5 cut(s) | 38, 73, 407, 613, 720 |
| PfoI | TCCNGGA | 2 cut(s) | 30, 410 |
| PkrI | GCNGC | 1 cut(s) | 370 |
| PleI | GAGTC | 2 cut(s) | 303, 476 |
| PpsI | GAGTC | 2 cut(s) | 303, 476 |
| Psp6I | CCWGG | 2 cut(s) | 30, 410 |
| PspGI | CCWGG | 2 cut(s) | 30, 410 |
| PspN4I | GGNNCC | 3 cut(s) | 85, 234, 260 |
| PspPI | GGNCC | 4 cut(s) | 164, 259, 585, 781 |
| PsuI | RGATCY | 2 cut(s) | 5, 487 |
| PvuII | CAGCTG | 1 cut(s) | 577 |
| RsaI | GTAC | 2 cut(s) | 476, 582 |
| RsaNI | GTAC | 2 cut(s) | 475, 581 |
| RseI | CAYNNNNRTG | 1 cut(s) | 51 |
| SaqAI | TTAA | 2 cut(s) | 123, 393 |
| SatI | GCNGC | 1 cut(s) | 369 |
| Sau3AI | GATC | 6 cut(s) | 5, 13, 273, 349, 487, 683 |
| Sau96I | GGNCC | 4 cut(s) | 164, 259, 585, 781 |
| SchI | GAGTC | 2 cut(s) | 303, 477 |
| ScrFI | CCNGG | 3 cut(s) | 32, 210, 412 |
| SfaNI | GCATC | 4 cut(s) | 32, 55, 355, 758 |
| SinI | GGWCC | 3 cut(s) | 259, 585, 781 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 51 |
| Sse9I | AATT | 3 cut(s) | 222, 264, 692 |
| SsiI | CCGC | 1 cut(s) | 378 |
| SspI | AATATT | 1 cut(s) | 112 |
| SspMI | CTAG | 1 cut(s) | 459 |
| StyD4I | CCNGG | 3 cut(s) | 30, 208, 410 |
| StyI | CCWWGG | 3 cut(s) | 167, 402, 588 |
| TaaI | ACNGT | 1 cut(s) | 781 |
| TaiI | ACGT | 1 cut(s) | 198 |
| TaqI | TCGA | 2 cut(s) | 762, 789 |
| TasI | AATT | 3 cut(s) | 222, 264, 692 |
| TatI | WGTACW | 1 cut(s) | 474 |
| TfiI | GAWTC | 5 cut(s) | 38, 73, 407, 613, 720 |
| Tru1I | TTAA | 2 cut(s) | 123, 393 |
| Tru9I | TTAA | 2 cut(s) | 123, 393 |
| TscAI | CASTG | 2 cut(s) | 209, 285 |
| TseFI | GTSAC | 1 cut(s) | 775 |
| TseI | GCWGC | 1 cut(s) | 368 |
| Tsp45I | GTSAC | 1 cut(s) | 775 |
| TspDTI | ATGAA | 3 cut(s) | 305, 311, 642 |
| TspGWI | ACGGA | 1 cut(s) | 598 |
| TspRI | CASTG | 2 cut(s) | 209, 285 |
| VpaK11BI | GGWCC | 3 cut(s) | 259, 585, 781 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 32 |
| XceI | RCATGY | 1 cut(s) | 176 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 750 |
| XspI | CTAG | 1 cut(s) | 459 |