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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 931 |
| Acc36I | ACCTGC | 1 cut(s) | 931 |
| AccI | GTMKAC | 1 cut(s) | 506 |
| AciI | CCGC | 1 cut(s) | 968 |
| AclWI | GGATC | 3 cut(s) | 379, 660, 956 |
| AcsI | RAATTY | 4 cut(s) | 42, 200, 667, 774 |
| AcuI | CTGAAG | 2 cut(s) | 1086, 1163 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 971 |
| AleI | CACNNNNGTG | 1 cut(s) | 1196 |
| AluBI | AGCT | 8 cut(s) | 55, 268, 710, 769, 823, 899, 1162, 1183 |
| AluI | AGCT | 8 cut(s) | 55, 268, 710, 769, 823, 899, 1162, 1183 |
| Alw21I | GWGCWC | 1 cut(s) | 526 |
| Alw26I | GTCTC | 4 cut(s) | 160, 391, 855, 1079 |
| AlwI | GGATC | 3 cut(s) | 379, 660, 956 |
| AoxI | GGCC | 1 cut(s) | 1127 |
| ApeKI | GCWGC | 3 cut(s) | 543, 823, 896 |
| ApoI | RAATTY | 4 cut(s) | 42, 200, 667, 774 |
| AspLEI | GCGC | 1 cut(s) | 1191 |
| AspS9I | GGNCC | 1 cut(s) | 1222 |
| AsuHPI | GGTGA | 5 cut(s) | 250, 912, 1009, 1092, 1210 |
| AvaII | GGWCC | 1 cut(s) | 1222 |
| Bbv12I | GWGCWC | 1 cut(s) | 526 |
| BbvI | GCAGC | 3 cut(s) | 530, 810, 908 |
| BccI | CCATC | 4 cut(s) | 68, 306, 603, 1243 |
| BclI | TGATCA | 1 cut(s) | 217 |
| BcoDI | GTCTC | 4 cut(s) | 160, 391, 855, 1079 |
| BfaI | CTAG | 1 cut(s) | 938 |
| BfmI | CTRYAG | 1 cut(s) | 791 |
| BfuAI | ACCTGC | 1 cut(s) | 931 |
| BglII | AGATCT | 1 cut(s) | 934 |
| BisI | GCNGC | 3 cut(s) | 544, 824, 897 |
| BlsI | GCNGC | 3 cut(s) | 545, 825, 898 |
| Bme18I | GGWCC | 1 cut(s) | 1222 |
| BmgT120I | GGNCC | 1 cut(s) | 1222 |
| BmiI | GGNNCC | 1 cut(s) | 1224 |
| BmsI | GCATC | 1 cut(s) | 598 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1184 |
| BpuEI | CTTGAG | 1 cut(s) | 1130 |
| BsaI | GGTCTC | 1 cut(s) | 1079 |
| BsaJI | CCNNGG | 1 cut(s) | 1194 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 971 |
| Bse118I | RCCGGY | 1 cut(s) | 1043 |
| Bse1I | ACTGG | 3 cut(s) | 23, 104, 360 |
| BseDI | CCNNGG | 1 cut(s) | 1194 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 971 |
| BseMII | CTCAG | 8 cut(s) | 171, 743, 1311, 1317, 1323, 1329, 1335, 1341 |
| BseNI | ACTGG | 3 cut(s) | 23, 104, 360 |
| BseRI | GAGGAG | 3 cut(s) | 833, 899, 1267 |
| BseXI | GCAGC | 3 cut(s) | 530, 810, 908 |
| BshFI | GGCC | 1 cut(s) | 1129 |
| BsiHKAI | GWGCWC | 1 cut(s) | 526 |
| BsiSI | CCGG | 2 cut(s) | 1044, 1126 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 971 |
| BsmAI | GTCTC | 4 cut(s) | 160, 391, 855, 1079 |
| BsmBI | CGTCTC | 1 cut(s) | 160 |
| BsnI | GGCC | 1 cut(s) | 1129 |
| Bso31I | GGTCTC | 1 cut(s) | 1079 |
| Bsp1286I | GDGCHC | 1 cut(s) | 526 |
| Bsp143I | GATC | 7 cut(s) | 142, 160, 217, 371, 652, 934, 961 |
| BspACI | CCGC | 1 cut(s) | 968 |
| BspANI | GGCC | 1 cut(s) | 1129 |
| BspCNI | CTCAG | 8 cut(s) | 170, 744, 1310, 1316, 1322, 1328, 1334, 1340 |
| BspLI | GGNNCC | 1 cut(s) | 1224 |
| BspMI | ACCTGC | 1 cut(s) | 931 |
| BspPI | GGATC | 3 cut(s) | 379, 660, 956 |
| BspQI | GCTCTTC | 1 cut(s) | 479 |
| BspTNI | GGTCTC | 1 cut(s) | 1079 |
| BsrFI | RCCGGY | 1 cut(s) | 1043 |
| BsrI | ACTGG | 3 cut(s) | 23, 104, 360 |
| BssAI | RCCGGY | 1 cut(s) | 1043 |
| BssECI | CCNNGG | 1 cut(s) | 1194 |
| BssMI | GATC | 7 cut(s) | 142, 160, 217, 371, 652, 934, 961 |
| Bst4CI | ACNGT | 5 cut(s) | 85, 399, 437, 795, 1123 |
| Bst6I | CTCTTC | 3 cut(s) | 182, 394, 479 |
| BstC8I | GCNNGC | 2 cut(s) | 558, 1131 |
| BstHHI | GCGC | 1 cut(s) | 1191 |
| BstKTI | GATC | 7 cut(s) | 145, 163, 220, 374, 655, 937, 964 |
| BstMAI | GTCTC | 4 cut(s) | 160, 391, 855, 1079 |
| BstMBI | GATC | 7 cut(s) | 142, 160, 217, 371, 652, 934, 961 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 820 |
| BstNSI | RCATGY | 2 cut(s) | 290, 1238 |
| BstSFI | CTRYAG | 1 cut(s) | 791 |
| BstV1I | GCAGC | 3 cut(s) | 530, 810, 908 |
| BstX2I | RGATCY | 3 cut(s) | 371, 652, 934 |
| BstYI | RGATCY | 3 cut(s) | 371, 652, 934 |
| BsuRI | GGCC | 1 cut(s) | 1129 |
| BtsI | GCAGTG | 1 cut(s) | 78 |
| BtsIMutI | CAGTG | 2 cut(s) | 78, 800 |
| BveI | ACCTGC | 1 cut(s) | 931 |
| Cac8I | GCNNGC | 2 cut(s) | 558, 1131 |
| CfoI | GCGC | 1 cut(s) | 1191 |
| Cfr10I | RCCGGY | 1 cut(s) | 1043 |
| Cfr13I | GGNCC | 1 cut(s) | 1222 |
| CseI | GACGC | 1 cut(s) | 142 |
| CviAII | CATG | 3 cut(s) | 287, 959, 1235 |
| DpnI | GATC | 7 cut(s) | 144, 162, 219, 373, 654, 936, 963 |
| DpnII | GATC | 7 cut(s) | 142, 160, 217, 371, 652, 934, 961 |
| DraI | TTTAAA | 1 cut(s) | 1168 |
| Eam1104I | CTCTTC | 3 cut(s) | 182, 394, 479 |
| EarI | CTCTTC | 3 cut(s) | 182, 394, 479 |
| Eco31I | GGTCTC | 1 cut(s) | 1079 |
| Eco47I | GGWCC | 1 cut(s) | 1222 |
| Eco57I | CTGAAG | 2 cut(s) | 1086, 1163 |
| EcoRI | GAATTC | 1 cut(s) | 667 |
| Esp3I | CGTCTC | 1 cut(s) | 160 |
| FaeI | CATG | 3 cut(s) | 290, 962, 1238 |
| FatI | CATG | 3 cut(s) | 286, 958, 1234 |
| FbaI | TGATCA | 1 cut(s) | 217 |
| FblI | GTMKAC | 1 cut(s) | 506 |
| Fnu4HI | GCNGC | 3 cut(s) | 544, 824, 897 |
| Fsp4HI | GCNGC | 3 cut(s) | 544, 824, 897 |
| FspBI | CTAG | 1 cut(s) | 938 |
| GlaI | GCGC | 1 cut(s) | 1190 |
| GluI | GCNGC | 3 cut(s) | 544, 824, 897 |
| HaeIII | GGCC | 1 cut(s) | 1129 |
| HapII | CCGG | 2 cut(s) | 1044, 1126 |
| HgaI | GACGC | 1 cut(s) | 142 |
| HhaI | GCGC | 1 cut(s) | 1191 |
| Hin1II | CATG | 3 cut(s) | 290, 962, 1238 |
| Hin6I | GCGC | 1 cut(s) | 1189 |
| HinP1I | GCGC | 1 cut(s) | 1189 |
| HincII | GTYRAC | 2 cut(s) | 292, 805 |
| HindII | GTYRAC | 2 cut(s) | 292, 805 |
| HindIII | AAGCTT | 2 cut(s) | 266, 708 |
| HpaII | CCGG | 2 cut(s) | 1044, 1126 |
| HphI | GGTGA | 5 cut(s) | 250, 912, 1009, 1092, 1210 |
| Hpy166II | GTNNAC | 4 cut(s) | 292, 507, 805, 920 |
| Hpy188III | TCNNGA | 7 cut(s) | 93, 236, 330, 393, 410, 938, 1003 |
| Hpy8I | GTNNAC | 4 cut(s) | 292, 507, 805, 920 |
| HpyAV | CCTTC | 4 cut(s) | 271, 461, 632, 917 |
| HpyCH4III | ACNGT | 5 cut(s) | 85, 399, 437, 795, 1123 |
| HpyCH4IV | ACGT | 1 cut(s) | 1243 |
| HpyCH4V | TGCA | 4 cut(s) | 611, 692, 814, 1240 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 820 |
| HpySE526I | ACGT | 1 cut(s) | 1243 |
| Hsp92II | CATG | 3 cut(s) | 290, 962, 1238 |
| HspAI | GCGC | 1 cut(s) | 1189 |
| Ksp22I | TGATCA | 1 cut(s) | 217 |
| Kzo9I | GATC | 7 cut(s) | 142, 160, 217, 371, 652, 934, 961 |
| LguI | GCTCTTC | 1 cut(s) | 479 |
| LmnI | GCTCC | 3 cut(s) | 126, 820, 1153 |
| Lsp1109I | GCAGC | 3 cut(s) | 530, 810, 908 |
| LweI | GCATC | 1 cut(s) | 598 |
| MaeI | CTAG | 1 cut(s) | 938 |
| MaeII | ACGT | 1 cut(s) | 1243 |
| MaeIII | GTNAC | 3 cut(s) | 31, 206, 256 |
| MalI | GATC | 7 cut(s) | 144, 162, 219, 373, 654, 936, 963 |
| MboI | GATC | 7 cut(s) | 142, 160, 217, 371, 652, 934, 961 |
| MboII | GAAGA | 5 cut(s) | 199, 381, 496, 1126, 1140 |
| MfeI | CAATTG | 1 cut(s) | 109 |
| MflI | RGATCY | 3 cut(s) | 371, 652, 934 |
| MhlI | GDGCHC | 1 cut(s) | 526 |
| MluCI | AATT | 9 cut(s) | 42, 109, 200, 479, 533, 667, 774, 877, 1037 |
| MseI | TTAA | 6 cut(s) | 431, 492, 657, 1040, 1167, 1229 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1196 |
| MspA1I | CMGCKG | 1 cut(s) | 968 |
| MspI | CCGG | 2 cut(s) | 1044, 1126 |
| MunI | CAATTG | 1 cut(s) | 109 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 820 |
| NdeII | GATC | 7 cut(s) | 142, 160, 217, 371, 652, 934, 961 |
| NlaIII | CATG | 3 cut(s) | 290, 962, 1238 |
| NlaIV | GGNNCC | 1 cut(s) | 1224 |
| NmuCI | GTSAC | 2 cut(s) | 206, 256 |
| NspI | RCATGY | 2 cut(s) | 290, 1238 |
| OliI | CACNNNNGTG | 1 cut(s) | 1196 |
| PaqCI | CACCTGC | 1 cut(s) | 931 |
| PciSI | GCTCTTC | 1 cut(s) | 479 |
| PfeI | GAWTC | 6 cut(s) | 316, 568, 676, 1253, 1265, 1283 |
| PkrI | GCNGC | 3 cut(s) | 545, 825, 898 |
| PspN4I | GGNNCC | 1 cut(s) | 1224 |
| PspPI | GGNCC | 1 cut(s) | 1222 |
| PsuI | RGATCY | 3 cut(s) | 371, 652, 934 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1196 |
| SapI | GCTCTTC | 1 cut(s) | 479 |
| SaqAI | TTAA | 6 cut(s) | 431, 492, 657, 1040, 1167, 1229 |
| SatI | GCNGC | 3 cut(s) | 544, 824, 897 |
| Sau3AI | GATC | 7 cut(s) | 142, 160, 217, 371, 652, 934, 961 |
| Sau96I | GGNCC | 1 cut(s) | 1222 |
| SduI | GDGCHC | 1 cut(s) | 526 |
| SfaNI | GCATC | 1 cut(s) | 598 |
| SfcI | CTRYAG | 1 cut(s) | 791 |
| SinI | GGWCC | 1 cut(s) | 1222 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1196 |
| SmlI | CTYRAG | 1 cut(s) | 1109 |
| SmoI | CTYRAG | 1 cut(s) | 1109 |
| Sse9I | AATT | 9 cut(s) | 42, 109, 200, 479, 533, 667, 774, 877, 1037 |
| SsiI | CCGC | 1 cut(s) | 968 |
| SspI | AATATT | 4 cut(s) | 422, 496, 661, 740 |
| SspMI | CTAG | 1 cut(s) | 938 |
| TaaI | ACNGT | 5 cut(s) | 85, 399, 437, 795, 1123 |
| TaiI | ACGT | 1 cut(s) | 1246 |
| TaqI | TCGA | 4 cut(s) | 329, 636, 648, 980 |
| TasI | AATT | 9 cut(s) | 42, 109, 200, 479, 533, 667, 774, 877, 1037 |
| TfiI | GAWTC | 6 cut(s) | 316, 568, 676, 1253, 1265, 1283 |
| Tru1I | TTAA | 6 cut(s) | 431, 492, 657, 1040, 1167, 1229 |
| Tru9I | TTAA | 6 cut(s) | 431, 492, 657, 1040, 1167, 1229 |
| TscAI | CASTG | 2 cut(s) | 78, 800 |
| TseFI | GTSAC | 2 cut(s) | 206, 256 |
| TseI | GCWGC | 3 cut(s) | 543, 823, 896 |
| Tsp45I | GTSAC | 2 cut(s) | 206, 256 |
| TspDTI | ATGAA | 2 cut(s) | 591, 733 |
| TspRI | CASTG | 2 cut(s) | 78, 800 |
| VpaK11BI | GGWCC | 1 cut(s) | 1222 |
| XapI | RAATTY | 4 cut(s) | 42, 200, 667, 774 |
| XbaI | TCTAGA | 1 cut(s) | 937 |
| XceI | RCATGY | 2 cut(s) | 290, 1238 |
| XmiI | GTMKAC | 1 cut(s) | 506 |
| XspI | CTAG | 1 cut(s) | 938 |