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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 487 |
| Acc36I | ACCTGC | 1 cut(s) | 269 |
| AccII | CGCG | 1 cut(s) | 659 |
| AciI | CCGC | 2 cut(s) | 107, 659 |
| AclWI | GGATC | 6 cut(s) | 30, 208, 338, 401, 541, 612 |
| AcyI | GRCGYC | 1 cut(s) | 484 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 424, 721 |
| AgsI | TTSAA | 2 cut(s) | 128, 292 |
| AjnI | CCWGG | 1 cut(s) | 381 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 120, 152 |
| AluBI | AGCT | 5 cut(s) | 11, 523, 633, 719, 761 |
| AluI | AGCT | 5 cut(s) | 11, 523, 633, 719, 761 |
| Alw21I | GWGCWC | 1 cut(s) | 635 |
| Alw26I | GTCTC | 2 cut(s) | 235, 498 |
| AlwI | GGATC | 6 cut(s) | 30, 208, 338, 401, 541, 612 |
| AoxI | GGCC | 3 cut(s) | 297, 455, 683 |
| AspLEI | GCGC | 1 cut(s) | 659 |
| AspS9I | GGNCC | 3 cut(s) | 60, 297, 455 |
| AsuHPI | GGTGA | 1 cut(s) | 554 |
| AsuII | TTCGAA | 1 cut(s) | 695 |
| AvaII | GGWCC | 1 cut(s) | 60 |
| BanII | GRGCYC | 1 cut(s) | 635 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 11, 43 |
| BbsI | GAAGAC | 1 cut(s) | 581 |
| Bbv12I | GWGCWC | 1 cut(s) | 635 |
| BbvCI | CCTCAGC | 2 cut(s) | 348, 720 |
| BccI | CCATC | 2 cut(s) | 361, 442 |
| BceAI | ACGGC | 1 cut(s) | 679 |
| BciT130I | CCWGG | 1 cut(s) | 383 |
| BcoDI | GTCTC | 2 cut(s) | 235, 498 |
| BfaI | CTAG | 3 cut(s) | 216, 357, 588 |
| BfuAI | ACCTGC | 1 cut(s) | 269 |
| Bme1390I | CCNGG | 1 cut(s) | 383 |
| Bme18I | GGWCC | 1 cut(s) | 60 |
| BmgT120I | GGNCC | 3 cut(s) | 60, 297, 455 |
| BmiI | GGNNCC | 2 cut(s) | 298, 304 |
| BmrFI | CCNGG | 1 cut(s) | 383 |
| BmsI | GCATC | 1 cut(s) | 265 |
| BpiI | GAAGAC | 1 cut(s) | 581 |
| Bpu10I | CCTNAGC | 2 cut(s) | 348, 720 |
| Bpu14I | TTCGAA | 1 cut(s) | 695 |
| BpuEI | CTTGAG | 2 cut(s) | 35, 548 |
| Bsa29I | ATCGAT | 1 cut(s) | 25 |
| BsaHI | GRCGYC | 1 cut(s) | 484 |
| BsaI | GGTCTC | 1 cut(s) | 235 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 424, 721 |
| Bse1I | ACTGG | 1 cut(s) | 544 |
| Bse3DI | GCAATG | 1 cut(s) | 652 |
| BseBI | CCWGG | 1 cut(s) | 383 |
| BseCI | ATCGAT | 1 cut(s) | 25 |
| BseGI | GGATG | 2 cut(s) | 280, 625 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 424, 721 |
| BseMI | GCAATG | 1 cut(s) | 652 |
| BseMII | CTCAG | 2 cut(s) | 362, 711 |
| BseNI | ACTGG | 1 cut(s) | 544 |
| BseRI | GAGGAG | 1 cut(s) | 737 |
| Bsh1236I | CGCG | 1 cut(s) | 659 |
| BshFI | GGCC | 3 cut(s) | 299, 457, 685 |
| BshVI | ATCGAT | 1 cut(s) | 25 |
| BsiHKAI | GWGCWC | 1 cut(s) | 635 |
| BsiSI | CCGG | 2 cut(s) | 251, 300 |
| BslFI | GGGAC | 1 cut(s) | 495 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 424, 721 |
| BsmAI | GTCTC | 2 cut(s) | 235, 498 |
| BsmFI | GGGAC | 1 cut(s) | 495 |
| BsnI | GGCC | 3 cut(s) | 299, 457, 685 |
| Bso31I | GGTCTC | 1 cut(s) | 235 |
| Bsp119I | TTCGAA | 1 cut(s) | 695 |
| Bsp1286I | GDGCHC | 1 cut(s) | 635 |
| Bsp143I | GATC | 7 cut(s) | 22, 55, 200, 343, 406, 533, 604 |
| BspACI | CCGC | 2 cut(s) | 107, 659 |
| BspANI | GGCC | 3 cut(s) | 299, 457, 685 |
| BspCNI | CTCAG | 2 cut(s) | 361, 712 |
| BspDI | ATCGAT | 1 cut(s) | 25 |
| BspFNI | CGCG | 1 cut(s) | 659 |
| BspLI | GGNNCC | 2 cut(s) | 298, 304 |
| BspMI | ACCTGC | 1 cut(s) | 269 |
| BspPI | GGATC | 6 cut(s) | 30, 208, 338, 401, 541, 612 |
| BspQI | GCTCTTC | 1 cut(s) | 623 |
| BspT104I | TTCGAA | 1 cut(s) | 695 |
| BspTNI | GGTCTC | 1 cut(s) | 235 |
| BsrDI | GCAATG | 1 cut(s) | 652 |
| BsrI | ACTGG | 1 cut(s) | 544 |
| BssMI | GATC | 7 cut(s) | 22, 55, 200, 343, 406, 533, 604 |
| BssNI | GRCGYC | 1 cut(s) | 484 |
| Bst2UI | CCWGG | 1 cut(s) | 383 |
| Bst4CI | ACNGT | 1 cut(s) | 463 |
| Bst6I | CTCTTC | 2 cut(s) | 623, 668 |
| BstACI | GRCGYC | 1 cut(s) | 484 |
| BstBI | TTCGAA | 1 cut(s) | 695 |
| BstC8I | GCNNGC | 2 cut(s) | 365, 759 |
| BstDEI | CTNAG | 4 cut(s) | 309, 348, 433, 720 |
| BstF5I | GGATG | 2 cut(s) | 280, 625 |
| BstFNI | CGCG | 1 cut(s) | 659 |
| BstHHI | GCGC | 1 cut(s) | 659 |
| BstKTI | GATC | 7 cut(s) | 25, 58, 203, 346, 409, 536, 607 |
| BstMAI | GTCTC | 2 cut(s) | 235, 498 |
| BstMBI | GATC | 7 cut(s) | 22, 55, 200, 343, 406, 533, 604 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 50, 663 |
| BstNI | CCWGG | 1 cut(s) | 383 |
| BstSCI | CCNGG | 1 cut(s) | 381 |
| BstUI | CGCG | 1 cut(s) | 659 |
| BstV2I | GAAGAC | 1 cut(s) | 581 |
| BstX2I | RGATCY | 2 cut(s) | 533, 604 |
| BstYI | RGATCY | 2 cut(s) | 533, 604 |
| Bsu15I | ATCGAT | 1 cut(s) | 25 |
| BsuRI | GGCC | 3 cut(s) | 299, 457, 685 |
| BsuTUI | ATCGAT | 1 cut(s) | 25 |
| BtsCI | GGATG | 2 cut(s) | 280, 625 |
| BtsI | GCAGTG | 2 cut(s) | 39, 158 |
| BtsIMutI | CAGTG | 4 cut(s) | 39, 158, 468, 470 |
| BveI | ACCTGC | 1 cut(s) | 269 |
| Cac8I | GCNNGC | 2 cut(s) | 365, 759 |
| CfoI | GCGC | 1 cut(s) | 659 |
| Cfr13I | GGNCC | 3 cut(s) | 60, 297, 455 |
| ClaI | ATCGAT | 1 cut(s) | 25 |
| CseI | GACGC | 1 cut(s) | 369 |
| CviAII | CATG | 3 cut(s) | 170, 498, 754 |
| DdeI | CTNAG | 4 cut(s) | 309, 348, 433, 720 |
| DpnI | GATC | 7 cut(s) | 24, 57, 202, 345, 408, 535, 606 |
| DpnII | GATC | 7 cut(s) | 22, 55, 200, 343, 406, 533, 604 |
| Eam1104I | CTCTTC | 2 cut(s) | 623, 668 |
| EarI | CTCTTC | 2 cut(s) | 623, 668 |
| Ecl136II | GAGCTC | 1 cut(s) | 633 |
| Eco24I | GRGCYC | 1 cut(s) | 635 |
| Eco31I | GGTCTC | 1 cut(s) | 235 |
| Eco47I | GGWCC | 1 cut(s) | 60 |
| Eco53kI | GAGCTC | 1 cut(s) | 633 |
| EcoICRI | GAGCTC | 1 cut(s) | 633 |
| EcoRII | CCWGG | 1 cut(s) | 381 |
| EcoT38I | GRGCYC | 1 cut(s) | 635 |
| FaeI | CATG | 3 cut(s) | 173, 501, 757 |
| FaiI | YATR | 6 cut(s) | 69, 116, 171, 499, 584, 755 |
| FaqI | GGGAC | 1 cut(s) | 495 |
| FatI | CATG | 3 cut(s) | 169, 497, 753 |
| FokI | GGATG | 2 cut(s) | 287, 632 |
| FriOI | GRGCYC | 1 cut(s) | 635 |
| FspBI | CTAG | 3 cut(s) | 216, 357, 588 |
| GlaI | GCGC | 1 cut(s) | 658 |
| HaeIII | GGCC | 3 cut(s) | 299, 457, 685 |
| HapII | CCGG | 2 cut(s) | 251, 300 |
| HgaI | GACGC | 1 cut(s) | 369 |
| HhaI | GCGC | 1 cut(s) | 659 |
| Hin1I | GRCGYC | 1 cut(s) | 484 |
| Hin1II | CATG | 3 cut(s) | 173, 501, 757 |
| Hin6I | GCGC | 1 cut(s) | 657 |
| HinP1I | GCGC | 1 cut(s) | 657 |
| HinfI | GANTC | 6 cut(s) | 163, 386, 467, 577, 591, 700 |
| HpaII | CCGG | 2 cut(s) | 251, 300 |
| HphI | GGTGA | 1 cut(s) | 554 |
| Hpy188I | TCNGA | 3 cut(s) | 35, 135, 397 |
| Hpy188III | TCNNGA | 3 cut(s) | 14, 357, 410 |
| HpyAV | CCTTC | 4 cut(s) | 13, 617, 675, 734 |
| HpyCH4III | ACNGT | 1 cut(s) | 463 |
| HpyCH4IV | ACGT | 1 cut(s) | 484 |
| HpyCH4V | TGCA | 2 cut(s) | 278, 757 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 50, 663 |
| HpyF3I | CTNAG | 4 cut(s) | 309, 348, 433, 720 |
| HpySE526I | ACGT | 1 cut(s) | 484 |
| Hsp92I | GRCGYC | 1 cut(s) | 484 |
| Hsp92II | CATG | 3 cut(s) | 173, 501, 757 |
| HspAI | GCGC | 1 cut(s) | 657 |
| Kzo9I | GATC | 7 cut(s) | 22, 55, 200, 343, 406, 533, 604 |
| LguI | GCTCTTC | 1 cut(s) | 623 |
| LmnI | GCTCC | 1 cut(s) | 302 |
| LpnPI | CCDG | 8 cut(s) | 264, 264, 313, 368, 395, 423, 525, 747 |
| LweI | GCATC | 1 cut(s) | 265 |
| MaeI | CTAG | 3 cut(s) | 216, 357, 588 |
| MaeII | ACGT | 1 cut(s) | 484 |
| MaeIII | GTNAC | 2 cut(s) | 468, 748 |
| MalI | GATC | 7 cut(s) | 24, 57, 202, 345, 408, 535, 606 |
| MboI | GATC | 7 cut(s) | 22, 55, 200, 343, 406, 533, 604 |
| MboII | GAAGA | 8 cut(s) | 410, 586, 640, 682, 685, 709, 739, 749 |
| MflI | RGATCY | 2 cut(s) | 533, 604 |
| MhlI | GDGCHC | 1 cut(s) | 635 |
| MluCI | AATT | 5 cut(s) | 87, 111, 157, 287, 369 |
| MlyI | GAGTC | 2 cut(s) | 476, 571 |
| MseI | TTAA | 2 cut(s) | 84, 518 |
| MspI | CCGG | 2 cut(s) | 251, 300 |
| MspR9I | CCNGG | 1 cut(s) | 383 |
| MvaI | CCWGG | 1 cut(s) | 383 |
| MvnI | CGCG | 1 cut(s) | 659 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 50, 663 |
| NdeII | GATC | 7 cut(s) | 22, 55, 200, 343, 406, 533, 604 |
| NlaIII | CATG | 3 cut(s) | 173, 501, 757 |
| NlaIV | GGNNCC | 2 cut(s) | 298, 304 |
| NmuCI | GTSAC | 2 cut(s) | 468, 748 |
| NspV | TTCGAA | 1 cut(s) | 695 |
| PciSI | GCTCTTC | 1 cut(s) | 623 |
| PfeI | GAWTC | 4 cut(s) | 163, 386, 591, 700 |
| PleI | GAGTC | 2 cut(s) | 475, 571 |
| PpsI | GAGTC | 2 cut(s) | 475, 571 |
| Psp124BI | GAGCTC | 1 cut(s) | 635 |
| Psp6I | CCWGG | 1 cut(s) | 381 |
| PspGI | CCWGG | 1 cut(s) | 381 |
| PspN4I | GGNNCC | 2 cut(s) | 298, 304 |
| PspPI | GGNCC | 3 cut(s) | 60, 297, 455 |
| PsuI | RGATCY | 2 cut(s) | 533, 604 |
| SacI | GAGCTC | 1 cut(s) | 635 |
| SapI | GCTCTTC | 1 cut(s) | 623 |
| SaqAI | TTAA | 2 cut(s) | 84, 518 |
| Sau3AI | GATC | 7 cut(s) | 22, 55, 200, 343, 406, 533, 604 |
| Sau96I | GGNCC | 3 cut(s) | 60, 297, 455 |
| SchI | GAGTC | 2 cut(s) | 476, 571 |
| ScrFI | CCNGG | 1 cut(s) | 383 |
| SduI | GDGCHC | 1 cut(s) | 635 |
| SfaNI | GCATC | 1 cut(s) | 265 |
| SfuI | TTCGAA | 1 cut(s) | 695 |
| SinI | GGWCC | 1 cut(s) | 60 |
| SmlI | CTYRAG | 2 cut(s) | 14, 563 |
| SmoI | CTYRAG | 2 cut(s) | 14, 563 |
| Sse9I | AATT | 5 cut(s) | 87, 111, 157, 287, 369 |
| SsiI | CCGC | 2 cut(s) | 107, 659 |
| SspMI | CTAG | 3 cut(s) | 216, 357, 588 |
| SstI | GAGCTC | 1 cut(s) | 635 |
| StyD4I | CCNGG | 1 cut(s) | 381 |
| TaaI | ACNGT | 1 cut(s) | 463 |
| TaiI | ACGT | 1 cut(s) | 487 |
| TaqI | TCGA | 3 cut(s) | 25, 224, 695 |
| TaqII | GACCGA | 1 cut(s) | 48 |
| TasI | AATT | 5 cut(s) | 87, 111, 157, 287, 369 |
| TfiI | GAWTC | 4 cut(s) | 163, 386, 591, 700 |
| Tru1I | TTAA | 2 cut(s) | 84, 518 |
| Tru9I | TTAA | 2 cut(s) | 84, 518 |
| TscAI | CASTG | 4 cut(s) | 46, 158, 468, 477 |
| TseFI | GTSAC | 2 cut(s) | 468, 748 |
| Tsp45I | GTSAC | 2 cut(s) | 468, 748 |
| TspDTI | ATGAA | 3 cut(s) | 110, 210, 636 |
| TspGWI | ACGGA | 1 cut(s) | 287 |
| TspRI | CASTG | 4 cut(s) | 46, 158, 468, 477 |
| VpaK11BI | GGWCC | 1 cut(s) | 60 |
| XbaI | TCTAGA | 1 cut(s) | 356 |
| XspI | CTAG | 3 cut(s) | 216, 357, 588 |
| ZraI | GACGTC | 1 cut(s) | 485 |