Ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 562 |
| AccB1I | GGYRCC | 1 cut(s) | 562 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 53 |
| AciI | CCGC | 1 cut(s) | 122 |
| AclI | AACGTT | 1 cut(s) | 156 |
| AclWI | GGATC | 1 cut(s) | 198 |
| AcsI | RAATTY | 2 cut(s) | 176, 278 |
| AcyI | GRCGYC | 1 cut(s) | 62 |
| AfaI | GTAC | 2 cut(s) | 495, 564 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 53, 455 |
| AgsI | TTSAA | 3 cut(s) | 22, 386, 403 |
| AhlI | ACTAGT | 1 cut(s) | 485 |
| AluBI | AGCT | 2 cut(s) | 536, 623 |
| AluI | AGCT | 2 cut(s) | 536, 623 |
| Alw26I | GTCTC | 3 cut(s) | 69, 468, 476 |
| AlwI | GGATC | 1 cut(s) | 198 |
| ApeKI | GCWGC | 1 cut(s) | 623 |
| ApoI | RAATTY | 2 cut(s) | 176, 278 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 254 |
| Asp718I | GGTACC | 1 cut(s) | 562 |
| AspS9I | GGNCC | 1 cut(s) | 8 |
| AsuHPI | GGTGA | 1 cut(s) | 103 |
| AsuII | TTCGAA | 1 cut(s) | 248 |
| AvaII | GGWCC | 1 cut(s) | 8 |
| BanI | GGYRCC | 1 cut(s) | 562 |
| BauI | CACGAG | 1 cut(s) | 213 |
| BbsI | GAAGAC | 1 cut(s) | 549 |
| BbvI | GCAGC | 1 cut(s) | 610 |
| BccI | CCATC | 2 cut(s) | 47, 76 |
| BcoDI | GTCTC | 3 cut(s) | 69, 468, 476 |
| BcuI | ACTAGT | 1 cut(s) | 485 |
| BfaI | CTAG | 1 cut(s) | 486 |
| BglII | AGATCT | 1 cut(s) | 88 |
| BisI | GCNGC | 1 cut(s) | 624 |
| BlsI | GCNGC | 1 cut(s) | 625 |
| Bme18I | GGWCC | 1 cut(s) | 8 |
| BmgT120I | GGNCC | 1 cut(s) | 8 |
| BmiI | GGNNCC | 1 cut(s) | 564 |
| BmsI | GCATC | 1 cut(s) | 117 |
| BpiI | GAAGAC | 1 cut(s) | 549 |
| Bpu14I | TTCGAA | 1 cut(s) | 248 |
| BsaHI | GRCGYC | 1 cut(s) | 62 |
| BsaI | GGTCTC | 1 cut(s) | 468 |
| BsaJI | CCNNGG | 2 cut(s) | 11, 424 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 53, 455 |
| BseDI | CCNNGG | 2 cut(s) | 11, 424 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 53, 455 |
| BseMII | CTCAG | 1 cut(s) | 471 |
| BseXI | GCAGC | 1 cut(s) | 610 |
| BshNI | GGYRCC | 1 cut(s) | 562 |
| BslFI | GGGAC | 1 cut(s) | 383 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 53, 455 |
| BsmAI | GTCTC | 3 cut(s) | 69, 468, 476 |
| BsmBI | CGTCTC | 1 cut(s) | 69 |
| BsmFI | GGGAC | 1 cut(s) | 383 |
| Bso31I | GGTCTC | 1 cut(s) | 468 |
| Bsp119I | TTCGAA | 1 cut(s) | 248 |
| Bsp143I | GATC | 3 cut(s) | 88, 190, 595 |
| BspACI | CCGC | 1 cut(s) | 122 |
| BspCNI | CTCAG | 1 cut(s) | 472 |
| BspLI | GGNNCC | 1 cut(s) | 564 |
| BspPI | GGATC | 1 cut(s) | 198 |
| BspT104I | TTCGAA | 1 cut(s) | 248 |
| BspT107I | GGYRCC | 1 cut(s) | 562 |
| BspTNI | GGTCTC | 1 cut(s) | 468 |
| BssECI | CCNNGG | 2 cut(s) | 11, 424 |
| BssMI | GATC | 3 cut(s) | 88, 190, 595 |
| BssNI | GRCGYC | 1 cut(s) | 62 |
| BssSI | CACGAG | 1 cut(s) | 213 |
| BssT1I | CCWWGG | 1 cut(s) | 424 |
| Bst2BI | CACGAG | 1 cut(s) | 213 |
| Bst4CI | ACNGT | 1 cut(s) | 12 |
| BstACI | GRCGYC | 1 cut(s) | 62 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 345 |
| BstBI | TTCGAA | 1 cut(s) | 248 |
| BstC8I | GCNNGC | 2 cut(s) | 126, 376 |
| BstDEI | CTNAG | 2 cut(s) | 480, 588 |
| BstDSI | CCRYGG | 1 cut(s) | 11 |
| BstKTI | GATC | 3 cut(s) | 91, 193, 598 |
| BstMAI | GTCTC | 3 cut(s) | 69, 468, 476 |
| BstMBI | GATC | 3 cut(s) | 88, 190, 595 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 158, 345, 589 |
| BstNSI | RCATGY | 1 cut(s) | 378 |
| BstV1I | GCAGC | 1 cut(s) | 610 |
| BstV2I | GAAGAC | 1 cut(s) | 549 |
| BstX2I | RGATCY | 1 cut(s) | 88 |
| BstYI | RGATCY | 1 cut(s) | 88 |
| BtgI | CCRYGG | 1 cut(s) | 11 |
| Cac8I | GCNNGC | 2 cut(s) | 126, 376 |
| Cfr13I | GGNCC | 1 cut(s) | 8 |
| CseI | GACGC | 2 cut(s) | 51, 380 |
| Csp6I | GTAC | 2 cut(s) | 494, 563 |
| CviAII | CATG | 4 cut(s) | 239, 262, 375, 518 |
| CviJI | RGCY | 6 cut(s) | 46, 389, 536, 557, 583, 623 |
| CviKI_1 | RGCY | 6 cut(s) | 46, 389, 536, 557, 583, 623 |
| CviQI | GTAC | 2 cut(s) | 494, 563 |
| DdeI | CTNAG | 2 cut(s) | 480, 588 |
| DpnI | GATC | 3 cut(s) | 90, 192, 597 |
| DpnII | GATC | 3 cut(s) | 88, 190, 595 |
| Eco130I | CCWWGG | 1 cut(s) | 424 |
| Eco31I | GGTCTC | 1 cut(s) | 468 |
| Eco47I | GGWCC | 1 cut(s) | 8 |
| EcoT14I | CCWWGG | 1 cut(s) | 424 |
| ErhI | CCWWGG | 1 cut(s) | 424 |
| Esp3I | CGTCTC | 1 cut(s) | 69 |
| FaeI | CATG | 4 cut(s) | 242, 265, 378, 521 |
| FaqI | GGGAC | 1 cut(s) | 383 |
| FatI | CATG | 4 cut(s) | 238, 261, 374, 517 |
| FauNDI | CATATG | 4 cut(s) | 49, 130, 186, 344 |
| Fnu4HI | GCNGC | 1 cut(s) | 624 |
| Fsp4HI | GCNGC | 1 cut(s) | 624 |
| FspBI | CTAG | 1 cut(s) | 486 |
| GluI | GCNGC | 1 cut(s) | 624 |
| HgaI | GACGC | 2 cut(s) | 51, 380 |
| Hin1I | GRCGYC | 1 cut(s) | 62 |
| Hin1II | CATG | 4 cut(s) | 242, 265, 378, 521 |
| HincII | GTYRAC | 1 cut(s) | 571 |
| HindII | GTYRAC | 1 cut(s) | 571 |
| HinfI | GANTC | 1 cut(s) | 322 |
| HphI | GGTGA | 1 cut(s) | 103 |
| Hpy166II | GTNNAC | 4 cut(s) | 8, 307, 496, 571 |
| Hpy188I | TCNGA | 1 cut(s) | 641 |
| Hpy188III | TCNNGA | 2 cut(s) | 215, 403 |
| Hpy8I | GTNNAC | 4 cut(s) | 8, 307, 496, 571 |
| HpyAV | CCTTC | 3 cut(s) | 265, 453, 613 |
| HpyCH4III | ACNGT | 1 cut(s) | 12 |
| HpyCH4IV | ACGT | 1 cut(s) | 156 |
| HpyCH4V | TGCA | 6 cut(s) | 70, 265, 339, 378, 521, 626 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 158, 345, 589 |
| HpyF3I | CTNAG | 2 cut(s) | 480, 588 |
| HpySE526I | ACGT | 1 cut(s) | 156 |
| Hsp92I | GRCGYC | 1 cut(s) | 62 |
| Hsp92II | CATG | 4 cut(s) | 242, 265, 378, 521 |
| KpnI | GGTACC | 1 cut(s) | 566 |
| Kzo9I | GATC | 3 cut(s) | 88, 190, 595 |
| LmnI | GCTCC | 1 cut(s) | 295 |
| LpnPI | CCDG | 5 cut(s) | 138, 465, 507, 579, 593 |
| Lsp1109I | GCAGC | 1 cut(s) | 610 |
| LweI | GCATC | 1 cut(s) | 117 |
| MaeI | CTAG | 1 cut(s) | 486 |
| MaeII | ACGT | 1 cut(s) | 156 |
| MalI | GATC | 3 cut(s) | 90, 192, 597 |
| MboI | GATC | 3 cut(s) | 88, 190, 595 |
| MboII | GAAGA | 7 cut(s) | 98, 173, 250, 304, 437, 503, 554 |
| MflI | RGATCY | 1 cut(s) | 88 |
| MluCI | AATT | 6 cut(s) | 176, 219, 243, 278, 551, 627 |
| MnlI | CCTC | 5 cut(s) | 132, 172, 295, 467, 619 |
| MroXI | GAANNNNTTC | 1 cut(s) | 254 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 158, 345, 589 |
| NdeI | CATATG | 4 cut(s) | 49, 130, 186, 344 |
| NdeII | GATC | 3 cut(s) | 88, 190, 595 |
| NlaIII | CATG | 4 cut(s) | 242, 265, 378, 521 |
| NlaIV | GGNNCC | 1 cut(s) | 564 |
| NspI | RCATGY | 1 cut(s) | 378 |
| NspV | TTCGAA | 1 cut(s) | 248 |
| PaeI | GCATGC | 1 cut(s) | 378 |
| PdmI | GAANNNNTTC | 1 cut(s) | 254 |
| PfeI | GAWTC | 1 cut(s) | 322 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 53 |
| PkrI | GCNGC | 1 cut(s) | 625 |
| Psp1406I | AACGTT | 1 cut(s) | 156 |
| PspN4I | GGNNCC | 1 cut(s) | 564 |
| PspPI | GGNCC | 1 cut(s) | 8 |
| PsuI | RGATCY | 1 cut(s) | 88 |
| RsaI | GTAC | 2 cut(s) | 495, 564 |
| RsaNI | GTAC | 2 cut(s) | 494, 563 |
| SatI | GCNGC | 1 cut(s) | 624 |
| Sau3AI | GATC | 3 cut(s) | 88, 190, 595 |
| Sau96I | GGNCC | 1 cut(s) | 8 |
| SfaNI | GCATC | 1 cut(s) | 117 |
| SfuI | TTCGAA | 1 cut(s) | 248 |
| SinI | GGWCC | 1 cut(s) | 8 |
| SpeI | ACTAGT | 1 cut(s) | 485 |
| SphI | GCATGC | 1 cut(s) | 378 |
| Sse9I | AATT | 6 cut(s) | 176, 219, 243, 278, 551, 627 |
| SsiI | CCGC | 1 cut(s) | 122 |
| SspMI | CTAG | 1 cut(s) | 486 |
| StyI | CCWWGG | 1 cut(s) | 424 |
| TaaI | ACNGT | 1 cut(s) | 12 |
| TaiI | ACGT | 1 cut(s) | 159 |
| TaqI | TCGA | 2 cut(s) | 248, 598 |
| TasI | AATT | 6 cut(s) | 176, 219, 243, 278, 551, 627 |
| TfiI | GAWTC | 1 cut(s) | 322 |
| TseI | GCWGC | 1 cut(s) | 623 |
| TspDTI | ATGAA | 5 cut(s) | 147, 173, 250, 555, 564 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 53 |
| VpaK11BI | GGWCC | 1 cut(s) | 8 |
| XapI | RAATTY | 2 cut(s) | 176, 278 |
| XceI | RCATGY | 1 cut(s) | 378 |
| XmnI | GAANNNNTTC | 1 cut(s) | 254 |
| XspI | CTAG | 1 cut(s) | 486 |