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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 66 |
| Acc36I | ACCTGC | 2 cut(s) | 510, 784 |
| AccI | GTMKAC | 1 cut(s) | 677 |
| AccII | CGCG | 1 cut(s) | 734 |
| AciI | CCGC | 3 cut(s) | 284, 635, 732 |
| AclWI | GGATC | 3 cut(s) | 207, 496, 919 |
| AcoI | YGGCCR | 1 cut(s) | 729 |
| AcuI | CTGAAG | 1 cut(s) | 236 |
| AcyI | GRCGYC | 2 cut(s) | 15, 63 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 346, 768, 874, 901 |
| AgsI | TTSAA | 5 cut(s) | 152, 455, 759, 886, 974 |
| AjnI | CCWGG | 1 cut(s) | 979 |
| AluBI | AGCT | 6 cut(s) | 358, 446, 458, 703, 859, 1006 |
| AluI | AGCT | 6 cut(s) | 358, 446, 458, 703, 859, 1006 |
| Alw21I | GWGCWC | 2 cut(s) | 163, 740 |
| Alw26I | GTCTC | 4 cut(s) | 528, 576, 593, 1015 |
| Alw44I | GTGCAC | 1 cut(s) | 159 |
| AlwI | GGATC | 3 cut(s) | 207, 496, 919 |
| Ama87I | CYCGRG | 1 cut(s) | 899 |
| AoxI | GGCC | 2 cut(s) | 729, 1046 |
| ApaLI | GTGCAC | 1 cut(s) | 159 |
| ApeKI | GCWGC | 2 cut(s) | 35, 443 |
| AspLEI | GCGC | 1 cut(s) | 1102 |
| AspS9I | GGNCC | 1 cut(s) | 795 |
| AsuC2I | CCSGG | 1 cut(s) | 650 |
| AsuHPI | GGTGA | 6 cut(s) | 13, 344, 708, 815, 928, 1102 |
| AsuNHI | GCTAGC | 1 cut(s) | 53 |
| AvaI | CYCGRG | 1 cut(s) | 899 |
| AvaII | GGWCC | 1 cut(s) | 795 |
| BaeGI | GKGCMC | 1 cut(s) | 163 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 597, 630 |
| Bbv12I | GWGCWC | 2 cut(s) | 163, 740 |
| BbvI | GCAGC | 2 cut(s) | 22, 455 |
| BccI | CCATC | 3 cut(s) | 121, 727, 961 |
| BceAI | ACGGC | 1 cut(s) | 2 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 890, 924, 973, 1007 |
| BciT130I | CCWGG | 1 cut(s) | 981 |
| BciVI | GTATCC | 2 cut(s) | 673, 765 |
| BcnI | CCSGG | 1 cut(s) | 650 |
| BcoDI | GTCTC | 4 cut(s) | 528, 576, 593, 1015 |
| BfaI | CTAG | 4 cut(s) | 54, 87, 744, 1137 |
| BfmI | CTRYAG | 1 cut(s) | 777 |
| BfuAI | ACCTGC | 2 cut(s) | 510, 784 |
| BfuI | GTATCC | 2 cut(s) | 673, 765 |
| BisI | GCNGC | 3 cut(s) | 36, 444, 732 |
| BlsI | GCNGC | 3 cut(s) | 37, 445, 733 |
| Bme1390I | CCNGG | 2 cut(s) | 650, 981 |
| Bme18I | GGWCC | 1 cut(s) | 795 |
| BmeT110I | CYCGRG | 1 cut(s) | 899 |
| BmgT120I | GGNCC | 1 cut(s) | 795 |
| BmiI | GGNNCC | 2 cut(s) | 297, 796 |
| BmrFI | CCNGG | 2 cut(s) | 650, 981 |
| BmsI | GCATC | 2 cut(s) | 276, 1015 |
| BmtI | GCTAGC | 1 cut(s) | 57 |
| BoxI | GACNNNNGTC | 1 cut(s) | 819 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 995, 1027 |
| BpuEI | CTTGAG | 2 cut(s) | 725, 845 |
| BpuMI | CCSGG | 1 cut(s) | 650 |
| BsaHI | GRCGYC | 2 cut(s) | 15, 63 |
| BsaI | GGTCTC | 3 cut(s) | 528, 576, 1015 |
| BsaJI | CCNNGG | 3 cut(s) | 798, 900, 999 |
| BsaWI | WCCGGW | 1 cut(s) | 874 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 832, 862, 879, 909 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 346, 768, 874, 901 |
| Bse1I | ACTGG | 4 cut(s) | 351, 636, 732, 939 |
| Bse3DI | GCAATG | 1 cut(s) | 315 |
| BseBI | CCWGG | 1 cut(s) | 981 |
| BseDI | CCNNGG | 3 cut(s) | 798, 900, 999 |
| BseGI | GGATG | 5 cut(s) | 130, 276, 355, 616, 972 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 346, 768, 874, 901 |
| BseMI | GCAATG | 1 cut(s) | 315 |
| BseMII | CTCAG | 5 cut(s) | 182, 588, 663, 681, 1086 |
| BseNI | ACTGG | 4 cut(s) | 351, 636, 732, 939 |
| BseRI | GAGGAG | 3 cut(s) | 16, 308, 884 |
| BseSI | GKGCMC | 1 cut(s) | 163 |
| BseXI | GCAGC | 2 cut(s) | 22, 455 |
| BseYI | CCCAGC | 1 cut(s) | 446 |
| Bsh1236I | CGCG | 1 cut(s) | 734 |
| BshFI | GGCC | 2 cut(s) | 731, 1048 |
| BsiHKAI | GWGCWC | 2 cut(s) | 163, 740 |
| BsiHKCI | CYCGRG | 1 cut(s) | 899 |
| BsiSI | CCGG | 2 cut(s) | 650, 875 |
| BslFI | GGGAC | 3 cut(s) | 74, 808, 980 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 346, 768, 874, 901 |
| BsmAI | GTCTC | 4 cut(s) | 528, 576, 593, 1015 |
| BsmFI | GGGAC | 3 cut(s) | 74, 808, 980 |
| BsnI | GGCC | 2 cut(s) | 731, 1048 |
| Bso31I | GGTCTC | 3 cut(s) | 528, 576, 1015 |
| BsoBI | CYCGRG | 1 cut(s) | 899 |
| Bsp1286I | GDGCHC | 2 cut(s) | 163, 740 |
| Bsp143I | GATC | 5 cut(s) | 166, 187, 199, 501, 924 |
| BspACI | CCGC | 3 cut(s) | 284, 635, 732 |
| BspANI | GGCC | 2 cut(s) | 731, 1048 |
| BspCNI | CTCAG | 5 cut(s) | 183, 589, 664, 682, 1087 |
| BspFNI | CGCG | 1 cut(s) | 734 |
| BspHI | TCATGA | 1 cut(s) | 397 |
| BspLI | GGNNCC | 2 cut(s) | 297, 796 |
| BspMAI | CTGCAG | 1 cut(s) | 781 |
| BspMI | ACCTGC | 2 cut(s) | 510, 784 |
| BspOI | GCTAGC | 1 cut(s) | 57 |
| BspPI | GGATC | 3 cut(s) | 207, 496, 919 |
| BspTNI | GGTCTC | 3 cut(s) | 528, 576, 1015 |
| BsrDI | GCAATG | 1 cut(s) | 315 |
| BsrI | ACTGG | 4 cut(s) | 351, 636, 732, 939 |
| BssECI | CCNNGG | 3 cut(s) | 798, 900, 999 |
| BssMI | GATC | 5 cut(s) | 166, 187, 199, 501, 924 |
| BssNI | GRCGYC | 2 cut(s) | 15, 63 |
| BssT1I | CCWWGG | 2 cut(s) | 798, 999 |
| Bst2UI | CCWGG | 1 cut(s) | 981 |
| Bst4CI | ACNGT | 1 cut(s) | 1147 |
| Bst6I | CTCTTC | 1 cut(s) | 257 |
| BstACI | GRCGYC | 2 cut(s) | 15, 63 |
| BstC8I | GCNNGC | 7 cut(s) | 45, 55, 180, 560, 576, 642, 736 |
| BstDEI | CTNAG | 7 cut(s) | 191, 434, 597, 672, 690, 954, 1095 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 899 |
| BstF5I | GGATG | 5 cut(s) | 130, 276, 355, 616, 972 |
| BstFNI | CGCG | 1 cut(s) | 734 |
| BstHHI | GCGC | 1 cut(s) | 1102 |
| BstKTI | GATC | 5 cut(s) | 169, 190, 202, 504, 927 |
| BstMAI | GTCTC | 4 cut(s) | 528, 576, 593, 1015 |
| BstMBI | GATC | 5 cut(s) | 166, 187, 199, 501, 924 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 44, 326, 641, 650, 744 |
| BstNI | CCWGG | 1 cut(s) | 981 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 819 |
| BstSCI | CCNGG | 2 cut(s) | 648, 979 |
| BstSFI | CTRYAG | 1 cut(s) | 777 |
| BstSLI | GKGCMC | 1 cut(s) | 163 |
| BstUI | CGCG | 1 cut(s) | 734 |
| BstV1I | GCAGC | 2 cut(s) | 22, 455 |
| BstX2I | RGATCY | 1 cut(s) | 924 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 967, 1006 |
| BstYI | RGATCY | 1 cut(s) | 924 |
| BsuI | GTATCC | 2 cut(s) | 673, 765 |
| BsuRI | GGCC | 2 cut(s) | 731, 1048 |
| BtsCI | GGATG | 5 cut(s) | 130, 276, 355, 616, 972 |
| BtsIMutI | CAGTG | 1 cut(s) | 629 |
| BveI | ACCTGC | 2 cut(s) | 510, 784 |
| Cac8I | GCNNGC | 7 cut(s) | 45, 55, 180, 560, 576, 642, 736 |
| CciI | TCATGA | 1 cut(s) | 397 |
| CfoI | GCGC | 1 cut(s) | 1102 |
| Cfr13I | GGNCC | 1 cut(s) | 795 |
| CseI | GACGC | 3 cut(s) | 23, 27, 809 |
| CviAII | CATG | 6 cut(s) | 304, 389, 398, 659, 908, 931 |
| DdeI | CTNAG | 7 cut(s) | 191, 434, 597, 672, 690, 954, 1095 |
| DpnI | GATC | 5 cut(s) | 168, 189, 201, 503, 926 |
| DpnII | GATC | 5 cut(s) | 166, 187, 199, 501, 924 |
| EaeI | YGGCCR | 1 cut(s) | 729 |
| Eam1104I | CTCTTC | 1 cut(s) | 257 |
| EarI | CTCTTC | 1 cut(s) | 257 |
| Eco130I | CCWWGG | 2 cut(s) | 798, 999 |
| Eco31I | GGTCTC | 3 cut(s) | 528, 576, 1015 |
| Eco32I | GATATC | 2 cut(s) | 235, 403 |
| Eco47I | GGWCC | 1 cut(s) | 795 |
| Eco57I | CTGAAG | 1 cut(s) | 236 |
| Eco88I | CYCGRG | 1 cut(s) | 899 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 899 |
| EcoRII | CCWGG | 1 cut(s) | 979 |
| EcoRV | GATATC | 2 cut(s) | 235, 403 |
| EcoT14I | CCWWGG | 2 cut(s) | 798, 999 |
| ErhI | CCWWGG | 2 cut(s) | 798, 999 |
| FaeI | CATG | 6 cut(s) | 307, 392, 401, 662, 911, 934 |
| FaiI | YATR | 8 cut(s) | 305, 390, 399, 569, 660, 909, 932, 962 |
| FaqI | GGGAC | 3 cut(s) | 74, 808, 980 |
| FatI | CATG | 6 cut(s) | 303, 388, 397, 658, 907, 930 |
| FblI | GTMKAC | 1 cut(s) | 677 |
| Fnu4HI | GCNGC | 3 cut(s) | 36, 444, 732 |
| FokI | GGATG | 5 cut(s) | 117, 263, 362, 623, 979 |
| Fsp4HI | GCNGC | 3 cut(s) | 36, 444, 732 |
| FspBI | CTAG | 4 cut(s) | 54, 87, 744, 1137 |
| GlaI | GCGC | 1 cut(s) | 1101 |
| GluI | GCNGC | 3 cut(s) | 36, 444, 732 |
| GsaI | CCCAGC | 1 cut(s) | 450 |
| HaeIII | GGCC | 2 cut(s) | 731, 1048 |
| HapII | CCGG | 2 cut(s) | 650, 875 |
| HgaI | GACGC | 3 cut(s) | 23, 27, 809 |
| HhaI | GCGC | 1 cut(s) | 1102 |
| Hin1I | GRCGYC | 2 cut(s) | 15, 63 |
| Hin1II | CATG | 6 cut(s) | 307, 392, 401, 662, 911, 934 |
| Hin6I | GCGC | 1 cut(s) | 1100 |
| HinP1I | GCGC | 1 cut(s) | 1100 |
| HincII | GTYRAC | 1 cut(s) | 678 |
| HindII | GTYRAC | 1 cut(s) | 678 |
| HindIII | AAGCTT | 1 cut(s) | 356 |
| HinfI | GANTC | 5 cut(s) | 93, 148, 367, 384, 674 |
| HpaII | CCGG | 2 cut(s) | 650, 875 |
| HphI | GGTGA | 6 cut(s) | 13, 344, 708, 815, 928, 1102 |
| Hpy166II | GTNNAC | 4 cut(s) | 161, 616, 678, 936 |
| Hpy188I | TCNGA | 9 cut(s) | 192, 216, 243, 423, 598, 673, 687, 724, 1024 |
| Hpy188III | TCNNGA | 3 cut(s) | 137, 152, 398 |
| Hpy8I | GTNNAC | 4 cut(s) | 161, 616, 678, 936 |
| Hpy99I | CGWCG | 2 cut(s) | 17, 43 |
| HpyAV | CCTTC | 5 cut(s) | 190, 211, 703, 1038, 1081 |
| HpyCH4III | ACNGT | 1 cut(s) | 1147 |
| HpyCH4IV | ACGT | 4 cut(s) | 63, 157, 226, 1039 |
| HpyCH4V | TGCA | 7 cut(s) | 161, 443, 493, 519, 578, 644, 779 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 44, 326, 641, 650, 744 |
| HpyF3I | CTNAG | 7 cut(s) | 191, 434, 597, 672, 690, 954, 1095 |
| HpySE526I | ACGT | 4 cut(s) | 63, 157, 226, 1039 |
| Hsp92I | GRCGYC | 2 cut(s) | 15, 63 |
| Hsp92II | CATG | 6 cut(s) | 307, 392, 401, 662, 911, 934 |
| HspAI | GCGC | 1 cut(s) | 1100 |
| Kzo9I | GATC | 5 cut(s) | 166, 187, 199, 501, 924 |
| LmnI | GCTCC | 4 cut(s) | 295, 700, 1003, 1159 |
| Lsp1109I | GCAGC | 2 cut(s) | 22, 455 |
| LweI | GCATC | 2 cut(s) | 276, 1015 |
| MaeI | CTAG | 4 cut(s) | 54, 87, 744, 1137 |
| MaeII | ACGT | 4 cut(s) | 63, 157, 226, 1039 |
| MaeIII | GTNAC | 5 cut(s) | 19, 714, 812, 821, 1090 |
| MalI | GATC | 5 cut(s) | 168, 189, 201, 503, 926 |
| MboI | GATC | 5 cut(s) | 166, 187, 199, 501, 924 |
| MboII | GAAGA | 3 cut(s) | 244, 247, 1096 |
| MflI | RGATCY | 1 cut(s) | 924 |
| MhlI | GDGCHC | 2 cut(s) | 163, 740 |
| MluCI | AATT | 4 cut(s) | 564, 589, 667, 1163 |
| MlyI | GAGTC | 2 cut(s) | 393, 683 |
| MmeI | TCCRAC | 4 cut(s) | 30, 121, 556, 765 |
| MseI | TTAA | 3 cut(s) | 144, 1149, 1168 |
| MslI | CAYNNNNRTG | 2 cut(s) | 965, 1023 |
| MspA1I | CMGCKG | 2 cut(s) | 286, 446 |
| MspI | CCGG | 2 cut(s) | 650, 875 |
| MspR9I | CCNGG | 2 cut(s) | 650, 981 |
| MvaI | CCWGG | 1 cut(s) | 981 |
| MvnI | CGCG | 1 cut(s) | 734 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 44, 326, 641, 650, 744 |
| NciI | CCSGG | 1 cut(s) | 650 |
| NdeII | GATC | 5 cut(s) | 166, 187, 199, 501, 924 |
| NheI | GCTAGC | 1 cut(s) | 53 |
| NlaIII | CATG | 6 cut(s) | 307, 392, 401, 662, 911, 934 |
| NlaIV | GGNNCC | 2 cut(s) | 297, 796 |
| NmuCI | GTSAC | 5 cut(s) | 19, 714, 812, 821, 1090 |
| PagI | TCATGA | 1 cut(s) | 397 |
| PfeI | GAWTC | 3 cut(s) | 93, 148, 367 |
| PflFI | GACNNNGTC | 1 cut(s) | 17 |
| PkrI | GCNGC | 3 cut(s) | 37, 445, 733 |
| PleI | GAGTC | 2 cut(s) | 392, 682 |
| PpsI | GAGTC | 2 cut(s) | 392, 682 |
| PshAI | GACNNNNGTC | 1 cut(s) | 819 |
| Psp6I | CCWGG | 1 cut(s) | 979 |
| PspFI | CCCAGC | 1 cut(s) | 446 |
| PspGI | CCWGG | 1 cut(s) | 979 |
| PspN4I | GGNNCC | 2 cut(s) | 297, 796 |
| PspPI | GGNCC | 1 cut(s) | 795 |
| PstI | CTGCAG | 1 cut(s) | 781 |
| PsuI | RGATCY | 1 cut(s) | 924 |
| PsyI | GACNNNGTC | 1 cut(s) | 17 |
| PvuII | CAGCTG | 1 cut(s) | 446 |
| RseI | CAYNNNNRTG | 2 cut(s) | 965, 1023 |
| SalI | GTCGAC | 1 cut(s) | 676 |
| SaqAI | TTAA | 3 cut(s) | 144, 1149, 1168 |
| SatI | GCNGC | 3 cut(s) | 36, 444, 732 |
| Sau3AI | GATC | 5 cut(s) | 166, 187, 199, 501, 924 |
| Sau96I | GGNCC | 1 cut(s) | 795 |
| SchI | GAGTC | 2 cut(s) | 393, 683 |
| ScrFI | CCNGG | 2 cut(s) | 650, 981 |
| SduI | GDGCHC | 2 cut(s) | 163, 740 |
| SfaNI | GCATC | 2 cut(s) | 276, 1015 |
| SfcI | CTRYAG | 1 cut(s) | 777 |
| SinI | GGWCC | 1 cut(s) | 795 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 965, 1023 |
| SmlI | CTYRAG | 2 cut(s) | 704, 860 |
| SmoI | CTYRAG | 2 cut(s) | 704, 860 |
| Sse9I | AATT | 4 cut(s) | 564, 589, 667, 1163 |
| SsiI | CCGC | 3 cut(s) | 284, 635, 732 |
| SspI | AATATT | 2 cut(s) | 514, 988 |
| SspMI | CTAG | 4 cut(s) | 54, 87, 744, 1137 |
| StyD4I | CCNGG | 2 cut(s) | 648, 979 |
| StyI | CCWWGG | 2 cut(s) | 798, 999 |
| TaaI | ACNGT | 1 cut(s) | 1147 |
| TaiI | ACGT | 4 cut(s) | 66, 160, 229, 1042 |
| TaqI | TCGA | 5 cut(s) | 12, 342, 382, 677, 1082 |
| TasI | AATT | 4 cut(s) | 564, 589, 667, 1163 |
| TauI | GCSGC | 1 cut(s) | 734 |
| TfiI | GAWTC | 3 cut(s) | 93, 148, 367 |
| Tru1I | TTAA | 3 cut(s) | 144, 1149, 1168 |
| Tru9I | TTAA | 3 cut(s) | 144, 1149, 1168 |
| TscAI | CASTG | 1 cut(s) | 636 |
| TseFI | GTSAC | 5 cut(s) | 19, 714, 812, 821, 1090 |
| TseI | GCWGC | 2 cut(s) | 35, 443 |
| Tsp45I | GTSAC | 5 cut(s) | 19, 714, 812, 821, 1090 |
| TspDTI | ATGAA | 2 cut(s) | 366, 896 |
| TspGWI | ACGGA | 1 cut(s) | 623 |
| TspRI | CASTG | 1 cut(s) | 636 |
| Tth111I | GACNNNGTC | 1 cut(s) | 17 |
| VneI | GTGCAC | 1 cut(s) | 159 |
| VpaK11BI | GGWCC | 1 cut(s) | 795 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 899 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 86 |
| XmiI | GTMKAC | 1 cut(s) | 677 |
| XspI | CTAG | 4 cut(s) | 54, 87, 744, 1137 |
| ZraI | GACGTC | 1 cut(s) | 64 |