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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 54 |
| AccB1I | GGYRCC | 1 cut(s) | 364 |
| AccI | GTMKAC | 1 cut(s) | 202 |
| AclWI | GGATC | 2 cut(s) | 66, 125 |
| AcyI | GRCGYC | 2 cut(s) | 51, 403 |
| AfaI | GTAC | 1 cut(s) | 348 |
| AgsI | TTSAA | 3 cut(s) | 176, 374, 533 |
| AjnI | CCWGG | 2 cut(s) | 93, 349 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 171, 203 |
| AluBI | AGCT | 2 cut(s) | 161, 289 |
| AluI | AGCT | 2 cut(s) | 161, 289 |
| Alw21I | GWGCWC | 1 cut(s) | 8 |
| Alw26I | GTCTC | 1 cut(s) | 479 |
| Alw44I | GTGCAC | 1 cut(s) | 4 |
| AlwI | GGATC | 2 cut(s) | 66, 125 |
| AoxI | GGCC | 1 cut(s) | 105 |
| ApaLI | GTGCAC | 1 cut(s) | 4 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 459 |
| AspS9I | GGNCC | 1 cut(s) | 91 |
| AsuHPI | GGTGA | 1 cut(s) | 213 |
| AvaII | GGWCC | 1 cut(s) | 91 |
| BaeGI | GKGCMC | 1 cut(s) | 8 |
| BanI | GGYRCC | 1 cut(s) | 364 |
| BanII | GRGCYC | 1 cut(s) | 418 |
| Bbv12I | GWGCWC | 1 cut(s) | 8 |
| BciT130I | CCWGG | 2 cut(s) | 95, 351 |
| BcoDI | GTCTC | 1 cut(s) | 479 |
| BfaI | CTAG | 2 cut(s) | 33, 78 |
| Bme1390I | CCNGG | 2 cut(s) | 95, 351 |
| Bme18I | GGWCC | 1 cut(s) | 91 |
| BmgT120I | GGNCC | 1 cut(s) | 91 |
| BmiI | GGNNCC | 2 cut(s) | 366, 415 |
| BmrFI | CCNGG | 2 cut(s) | 95, 351 |
| BmrI | ACTGGG | 1 cut(s) | 236 |
| BmsI | GCATC | 1 cut(s) | 285 |
| BmuI | ACTGGG | 1 cut(s) | 236 |
| BpuEI | CTTGAG | 1 cut(s) | 275 |
| BsaAI | YACGTR | 1 cut(s) | 480 |
| BsaHI | GRCGYC | 2 cut(s) | 51, 403 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 448, 478 |
| Bse1I | ACTGG | 2 cut(s) | 242, 368 |
| BseBI | CCWGG | 2 cut(s) | 95, 351 |
| BseNI | ACTGG | 2 cut(s) | 242, 368 |
| BseSI | GKGCMC | 1 cut(s) | 8 |
| BshFI | GGCC | 1 cut(s) | 107 |
| BshNI | GGYRCC | 1 cut(s) | 364 |
| BsiHKAI | GWGCWC | 1 cut(s) | 8 |
| BslFI | GGGAC | 1 cut(s) | 279 |
| BsmAI | GTCTC | 1 cut(s) | 479 |
| BsmFI | GGGAC | 1 cut(s) | 279 |
| BsmI | GAATGC | 1 cut(s) | 207 |
| BsnI | GGCC | 1 cut(s) | 107 |
| Bsp1286I | GDGCHC | 2 cut(s) | 8, 418 |
| Bsp143I | GATC | 4 cut(s) | 45, 71, 80, 130 |
| BspANI | GGCC | 1 cut(s) | 107 |
| BspHI | TCATGA | 2 cut(s) | 127, 340 |
| BspLI | GGNNCC | 2 cut(s) | 366, 415 |
| BspPI | GGATC | 2 cut(s) | 66, 125 |
| BspT107I | GGYRCC | 1 cut(s) | 364 |
| BsrI | ACTGG | 2 cut(s) | 242, 368 |
| BssMI | GATC | 4 cut(s) | 45, 71, 80, 130 |
| BssNI | GRCGYC | 2 cut(s) | 51, 403 |
| Bst2UI | CCWGG | 2 cut(s) | 95, 351 |
| BstACI | GRCGYC | 2 cut(s) | 51, 403 |
| BstBAI | YACGTR | 1 cut(s) | 480 |
| BstC8I | GCNNGC | 1 cut(s) | 300 |
| BstDEI | CTNAG | 1 cut(s) | 14 |
| BstKTI | GATC | 4 cut(s) | 48, 74, 83, 133 |
| BstMAI | GTCTC | 1 cut(s) | 479 |
| BstMBI | GATC | 4 cut(s) | 45, 71, 80, 130 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 295 |
| BstNI | CCWGG | 2 cut(s) | 95, 351 |
| BstSCI | CCNGG | 2 cut(s) | 93, 349 |
| BstSLI | GKGCMC | 1 cut(s) | 8 |
| BsuRI | GGCC | 1 cut(s) | 107 |
| Cac8I | GCNNGC | 1 cut(s) | 300 |
| CciI | TCATGA | 2 cut(s) | 127, 340 |
| Cfr13I | GGNCC | 1 cut(s) | 91 |
| CseI | GACGC | 2 cut(s) | 213, 392 |
| CsiI | ACCWGGT | 2 cut(s) | 93, 349 |
| Csp6I | GTAC | 1 cut(s) | 347 |
| CviAII | CATG | 2 cut(s) | 128, 341 |
| CviJI | RGCY | 5 cut(s) | 107, 161, 289, 337, 416 |
| CviKI_1 | RGCY | 5 cut(s) | 107, 161, 289, 337, 416 |
| CviQI | GTAC | 1 cut(s) | 347 |
| DdeI | CTNAG | 1 cut(s) | 14 |
| DpnI | GATC | 4 cut(s) | 47, 73, 82, 132 |
| DpnII | GATC | 4 cut(s) | 45, 71, 80, 130 |
| Eco24I | GRGCYC | 1 cut(s) | 418 |
| Eco47I | GGWCC | 1 cut(s) | 91 |
| EcoRII | CCWGG | 2 cut(s) | 93, 349 |
| EcoT38I | GRGCYC | 1 cut(s) | 418 |
| FaeI | CATG | 2 cut(s) | 131, 344 |
| FaiI | YATR | 3 cut(s) | 39, 129, 342 |
| FaqI | GGGAC | 1 cut(s) | 279 |
| FatI | CATG | 2 cut(s) | 127, 340 |
| FblI | GTMKAC | 1 cut(s) | 202 |
| FriOI | GRGCYC | 1 cut(s) | 418 |
| FspBI | CTAG | 2 cut(s) | 33, 78 |
| HaeIII | GGCC | 1 cut(s) | 107 |
| HgaI | GACGC | 2 cut(s) | 213, 392 |
| Hin1I | GRCGYC | 2 cut(s) | 51, 403 |
| Hin1II | CATG | 2 cut(s) | 131, 344 |
| HinfI | GANTC | 1 cut(s) | 472 |
| HphI | GGTGA | 1 cut(s) | 213 |
| Hpy166II | GTNNAC | 2 cut(s) | 6, 203 |
| Hpy188I | TCNGA | 3 cut(s) | 71, 249, 357 |
| Hpy188III | TCNNGA | 5 cut(s) | 21, 128, 134, 292, 341 |
| Hpy8I | GTNNAC | 2 cut(s) | 6, 203 |
| Hpy99I | CGWCG | 1 cut(s) | 53 |
| HpyCH4IV | ACGT | 2 cut(s) | 51, 479 |
| HpyCH4V | TGCA | 4 cut(s) | 6, 235, 302, 323 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 295 |
| HpyF3I | CTNAG | 1 cut(s) | 14 |
| HpySE526I | ACGT | 2 cut(s) | 51, 479 |
| Hsp92I | GRCGYC | 2 cut(s) | 51, 403 |
| Hsp92II | CATG | 2 cut(s) | 131, 344 |
| Kzo9I | GATC | 4 cut(s) | 45, 71, 80, 130 |
| LmnI | GCTCC | 1 cut(s) | 413 |
| LweI | GCATC | 1 cut(s) | 285 |
| MabI | ACCWGGT | 2 cut(s) | 93, 349 |
| MaeI | CTAG | 2 cut(s) | 33, 78 |
| MaeII | ACGT | 2 cut(s) | 51, 479 |
| MalI | GATC | 4 cut(s) | 47, 73, 82, 132 |
| MboI | GATC | 4 cut(s) | 45, 71, 80, 130 |
| MboII | GAAGA | 2 cut(s) | 188, 486 |
| MhlI | GDGCHC | 2 cut(s) | 8, 418 |
| MlyI | GAGTC | 1 cut(s) | 481 |
| MmeI | TCCRAC | 1 cut(s) | 335 |
| MnlI | CCTC | 8 cut(s) | 82, 191, 234, 376, 392, 417, 442, 474 |
| MroXI | GAANNNNTTC | 1 cut(s) | 459 |
| MslI | CAYNNNNRTG | 1 cut(s) | 59 |
| MspR9I | CCNGG | 2 cut(s) | 95, 351 |
| Mva1269I | GAATGC | 1 cut(s) | 207 |
| MvaI | CCWGG | 2 cut(s) | 95, 351 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 295 |
| NdeII | GATC | 4 cut(s) | 45, 71, 80, 130 |
| NlaIII | CATG | 2 cut(s) | 131, 344 |
| NlaIV | GGNNCC | 2 cut(s) | 366, 415 |
| PagI | TCATGA | 2 cut(s) | 127, 340 |
| PctI | GAATGC | 1 cut(s) | 207 |
| PdmI | GAANNNNTTC | 1 cut(s) | 459 |
| PleI | GAGTC | 1 cut(s) | 480 |
| PpsI | GAGTC | 1 cut(s) | 480 |
| Ppu21I | YACGTR | 1 cut(s) | 480 |
| Psp6I | CCWGG | 2 cut(s) | 93, 349 |
| PspGI | CCWGG | 2 cut(s) | 93, 349 |
| PspN4I | GGNNCC | 2 cut(s) | 366, 415 |
| PspPI | GGNCC | 1 cut(s) | 91 |
| RsaI | GTAC | 1 cut(s) | 348 |
| RsaNI | GTAC | 1 cut(s) | 347 |
| RseI | CAYNNNNRTG | 1 cut(s) | 59 |
| Sau3AI | GATC | 4 cut(s) | 45, 71, 80, 130 |
| Sau96I | GGNCC | 1 cut(s) | 91 |
| SchI | GAGTC | 1 cut(s) | 481 |
| ScrFI | CCNGG | 2 cut(s) | 95, 351 |
| SduI | GDGCHC | 2 cut(s) | 8, 418 |
| SetI | ASST | 9 cut(s) | 34, 54, 99, 163, 202, 226, 291, 355, 482 |
| SexAI | ACCWGGT | 2 cut(s) | 93, 349 |
| SfaNI | GCATC | 1 cut(s) | 285 |
| SinI | GGWCC | 1 cut(s) | 91 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 59 |
| SmlI | CTYRAG | 1 cut(s) | 290 |
| SmoI | CTYRAG | 1 cut(s) | 290 |
| SspMI | CTAG | 2 cut(s) | 33, 78 |
| StyD4I | CCNGG | 2 cut(s) | 93, 349 |
| TaiI | ACGT | 2 cut(s) | 54, 482 |
| TaqI | TCGA | 1 cut(s) | 48 |
| TspDTI | ATGAA | 3 cut(s) | 116, 329, 357 |
| VneI | GTGCAC | 1 cut(s) | 4 |
| VpaK11BI | GGWCC | 1 cut(s) | 91 |
| XmiI | GTMKAC | 1 cut(s) | 202 |
| XmnI | GAANNNNTTC | 1 cut(s) | 459 |
| XspI | CTAG | 2 cut(s) | 33, 78 |
| ZraI | GACGTC | 1 cut(s) | 52 |