Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 35 |
| AciI | CCGC | 7 cut(s) | 24, 35, 53, 235, 404, 800, 856 |
| AclWI | GGATC | 3 cut(s) | 171, 341, 778 |
| AcoI | YGGCCR | 1 cut(s) | 126 |
| AcsI | RAATTY | 4 cut(s) | 501, 604, 998, 1079 |
| AfaI | GTAC | 1 cut(s) | 226 |
| AgsI | TTSAA | 8 cut(s) | 85, 105, 211, 218, 388, 547, 785, 1109 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 937 |
| AjiI | CACGTC | 1 cut(s) | 934 |
| AjnI | CCWGG | 4 cut(s) | 339, 568, 675, 739 |
| AluBI | AGCT | 8 cut(s) | 30, 90, 172, 311, 518, 862, 1032, 1112 |
| AluI | AGCT | 8 cut(s) | 30, 90, 172, 311, 518, 862, 1032, 1112 |
| Alw26I | GTCTC | 2 cut(s) | 701, 1013 |
| AlwI | GGATC | 3 cut(s) | 171, 341, 778 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 166 |
| AoxI | GGCC | 7 cut(s) | 126, 232, 290, 337, 787, 890, 962 |
| ApeKI | GCWGC | 4 cut(s) | 169, 322, 325, 1025 |
| ApoI | RAATTY | 4 cut(s) | 501, 604, 998, 1079 |
| AspS9I | GGNCC | 1 cut(s) | 290 |
| AsuC2I | CCSGG | 1 cut(s) | 1116 |
| AsuHPI | GGTGA | 3 cut(s) | 589, 963, 1028 |
| AsuNHI | GCTAGC | 1 cut(s) | 1028 |
| AxyI | CCTNAGG | 2 cut(s) | 887, 1134 |
| BalI | TGGCCA | 1 cut(s) | 128 |
| BanII | GRGCYC | 1 cut(s) | 59 |
| BbvCI | CCTCAGC | 1 cut(s) | 897 |
| BbvI | GCAGC | 4 cut(s) | 181, 309, 337, 1012 |
| BccI | CCATC | 5 cut(s) | 194, 329, 540, 639, 1007 |
| BceAI | ACGGC | 1 cut(s) | 277 |
| BciT130I | CCWGG | 4 cut(s) | 341, 570, 677, 741 |
| BciVI | GTATCC | 1 cut(s) | 410 |
| BclI | TGATCA | 1 cut(s) | 472 |
| BcnI | CCSGG | 1 cut(s) | 1116 |
| BcoDI | GTCTC | 2 cut(s) | 701, 1013 |
| BfaI | CTAG | 4 cut(s) | 50, 413, 914, 1029 |
| BfmI | CTRYAG | 2 cut(s) | 167, 323 |
| BfuI | GTATCC | 1 cut(s) | 410 |
| BisI | GCNGC | 6 cut(s) | 36, 170, 235, 323, 326, 1026 |
| BlsI | GCNGC | 6 cut(s) | 37, 171, 236, 324, 327, 1027 |
| Bme1390I | CCNGG | 5 cut(s) | 341, 570, 677, 741, 1116 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 937 |
| BmgBI | CACGTC | 1 cut(s) | 934 |
| BmgT120I | GGNCC | 1 cut(s) | 290 |
| BmiI | GGNNCC | 1 cut(s) | 205 |
| BmrFI | CCNGG | 5 cut(s) | 341, 570, 677, 741, 1116 |
| BmsI | GCATC | 3 cut(s) | 47, 195, 661 |
| BmtI | GCTAGC | 1 cut(s) | 1032 |
| BpmI | CTGGAG | 2 cut(s) | 591, 795 |
| Bpu10I | CCTNAGC | 1 cut(s) | 897 |
| BpuEI | CTTGAG | 1 cut(s) | 542 |
| BpuMI | CCSGG | 1 cut(s) | 1116 |
| BsaBI | GATNNNNATC | 2 cut(s) | 471, 630 |
| BsaJI | CCNNGG | 3 cut(s) | 229, 293, 675 |
| BsaWI | WCCGGW | 1 cut(s) | 313 |
| Bse1I | ACTGG | 1 cut(s) | 812 |
| Bse21I | CCTNAGG | 2 cut(s) | 887, 1134 |
| Bse8I | GATNNNNATC | 2 cut(s) | 471, 630 |
| BseBI | CCWGG | 4 cut(s) | 341, 570, 677, 741 |
| BseDI | CCNNGG | 3 cut(s) | 229, 293, 675 |
| BseGI | GGATG | 3 cut(s) | 357, 532, 728 |
| BseJI | GATNNNNATC | 2 cut(s) | 471, 630 |
| BseMII | CTCAG | 3 cut(s) | 125, 173, 888 |
| BseNI | ACTGG | 1 cut(s) | 812 |
| BseXI | GCAGC | 4 cut(s) | 181, 309, 337, 1012 |
| Bsh1236I | CGCG | 1 cut(s) | 35 |
| Bsh1285I | CGRYCG | 1 cut(s) | 704 |
| BshFI | GGCC | 7 cut(s) | 128, 234, 292, 339, 789, 892, 964 |
| BsiEI | CGRYCG | 1 cut(s) | 704 |
| BsiSI | CCGG | 2 cut(s) | 314, 1115 |
| BslFI | GGGAC | 1 cut(s) | 967 |
| BsmAI | GTCTC | 2 cut(s) | 701, 1013 |
| BsmFI | GGGAC | 1 cut(s) | 967 |
| BsmI | GAATGC | 1 cut(s) | 100 |
| BsnI | GGCC | 7 cut(s) | 128, 234, 292, 339, 789, 892, 964 |
| Bsp1286I | GDGCHC | 1 cut(s) | 59 |
| Bsp143I | GATC | 9 cut(s) | 163, 253, 265, 346, 472, 561, 701, 751, 770 |
| BspACI | CCGC | 7 cut(s) | 24, 35, 53, 235, 404, 800, 856 |
| BspANI | GGCC | 7 cut(s) | 128, 234, 292, 339, 789, 892, 964 |
| BspCNI | CTCAG | 3 cut(s) | 124, 172, 889 |
| BspFNI | CGCG | 1 cut(s) | 35 |
| BspHI | TCATGA | 2 cut(s) | 432, 643 |
| BspLI | GGNNCC | 1 cut(s) | 205 |
| BspMAI | CTGCAG | 2 cut(s) | 171, 327 |
| BspOI | GCTAGC | 1 cut(s) | 1032 |
| BspPI | GGATC | 3 cut(s) | 171, 341, 778 |
| BsrI | ACTGG | 1 cut(s) | 812 |
| BssECI | CCNNGG | 3 cut(s) | 229, 293, 675 |
| BssMI | GATC | 9 cut(s) | 163, 253, 265, 346, 472, 561, 701, 751, 770 |
| BssT1I | CCWWGG | 1 cut(s) | 229 |
| Bst2UI | CCWGG | 4 cut(s) | 341, 570, 677, 741 |
| Bst4CI | ACNGT | 4 cut(s) | 150, 224, 483, 949 |
| Bst6I | CTCTTC | 1 cut(s) | 411 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 627 |
| BstC8I | GCNNGC | 7 cut(s) | 28, 55, 408, 791, 860, 894, 1030 |
| BstDEI | CTNAG | 8 cut(s) | 111, 159, 887, 897, 919, 1047, 1126, 1134 |
| BstDSI | CCRYGG | 1 cut(s) | 293 |
| BstF5I | GGATG | 3 cut(s) | 357, 532, 728 |
| BstFNI | CGCG | 1 cut(s) | 35 |
| BstKTI | GATC | 9 cut(s) | 166, 256, 268, 349, 475, 564, 704, 754, 773 |
| BstMAI | GTCTC | 2 cut(s) | 701, 1013 |
| BstMBI | GATC | 9 cut(s) | 163, 253, 265, 346, 472, 561, 701, 751, 770 |
| BstMCI | CGRYCG | 1 cut(s) | 704 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 32, 44, 449, 627, 799, 859 |
| BstNI | CCWGG | 4 cut(s) | 341, 570, 677, 741 |
| BstSCI | CCNGG | 5 cut(s) | 339, 568, 675, 739, 1114 |
| BstSFI | CTRYAG | 2 cut(s) | 167, 323 |
| BstUI | CGCG | 1 cut(s) | 35 |
| BstV1I | GCAGC | 4 cut(s) | 181, 309, 337, 1012 |
| BstX2I | RGATCY | 2 cut(s) | 163, 346 |
| BstYI | RGATCY | 2 cut(s) | 163, 346 |
| Bsu36I | CCTNAGG | 2 cut(s) | 887, 1134 |
| BsuI | GTATCC | 1 cut(s) | 410 |
| BsuRI | GGCC | 7 cut(s) | 128, 234, 292, 339, 789, 892, 964 |
| BtgI | CCRYGG | 1 cut(s) | 293 |
| BtrI | CACGTC | 1 cut(s) | 934 |
| BtsCI | GGATG | 3 cut(s) | 357, 532, 728 |
| Cac8I | GCNNGC | 7 cut(s) | 28, 55, 408, 791, 860, 894, 1030 |
| CaiI | CAGNNNCTG | 1 cut(s) | 166 |
| CciI | TCATGA | 2 cut(s) | 432, 643 |
| Cfr13I | GGNCC | 1 cut(s) | 290 |
| CseI | GACGC | 1 cut(s) | 192 |
| Csp6I | GTAC | 1 cut(s) | 225 |
| CviAII | CATG | 6 cut(s) | 364, 433, 512, 521, 611, 644 |
| CviQI | GTAC | 1 cut(s) | 225 |
| DdeI | CTNAG | 8 cut(s) | 111, 159, 887, 897, 919, 1047, 1126, 1134 |
| DpnI | GATC | 9 cut(s) | 165, 255, 267, 348, 474, 563, 703, 753, 772 |
| DpnII | GATC | 9 cut(s) | 163, 253, 265, 346, 472, 561, 701, 751, 770 |
| DriI | GACNNNNNGTC | 1 cut(s) | 937 |
| EaeI | YGGCCR | 1 cut(s) | 126 |
| Eam1104I | CTCTTC | 1 cut(s) | 411 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 937 |
| EarI | CTCTTC | 1 cut(s) | 411 |
| Eco130I | CCWWGG | 1 cut(s) | 229 |
| Eco147I | AGGCCT | 3 cut(s) | 789, 892, 964 |
| Eco24I | GRGCYC | 1 cut(s) | 59 |
| Eco81I | CCTNAGG | 2 cut(s) | 887, 1134 |
| EcoRII | CCWGG | 4 cut(s) | 339, 568, 675, 739 |
| EcoT14I | CCWWGG | 1 cut(s) | 229 |
| EcoT38I | GRGCYC | 1 cut(s) | 59 |
| ErhI | CCWWGG | 1 cut(s) | 229 |
| FaeI | CATG | 6 cut(s) | 367, 436, 515, 524, 614, 647 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 336, 368 |
| FaqI | GGGAC | 1 cut(s) | 967 |
| FatI | CATG | 6 cut(s) | 363, 432, 511, 520, 610, 643 |
| FauI | CCCGC | 2 cut(s) | 46, 411 |
| FbaI | TGATCA | 1 cut(s) | 472 |
| Fnu4HI | GCNGC | 6 cut(s) | 36, 170, 235, 323, 326, 1026 |
| FokI | GGATG | 3 cut(s) | 344, 519, 715 |
| FriOI | GRGCYC | 1 cut(s) | 59 |
| Fsp4HI | GCNGC | 6 cut(s) | 36, 170, 235, 323, 326, 1026 |
| FspBI | CTAG | 4 cut(s) | 50, 413, 914, 1029 |
| GluI | GCNGC | 6 cut(s) | 36, 170, 235, 323, 326, 1026 |
| GsuI | CTGGAG | 2 cut(s) | 591, 795 |
| HaeIII | GGCC | 7 cut(s) | 128, 234, 292, 339, 789, 892, 964 |
| HapII | CCGG | 2 cut(s) | 314, 1115 |
| HgaI | GACGC | 1 cut(s) | 192 |
| Hin1II | CATG | 6 cut(s) | 367, 436, 515, 524, 614, 647 |
| HindIII | AAGCTT | 2 cut(s) | 28, 860 |
| HinfI | GANTC | 4 cut(s) | 367, 496, 553, 938 |
| HpaII | CCGG | 2 cut(s) | 314, 1115 |
| HphI | GGTGA | 3 cut(s) | 589, 963, 1028 |
| Hpy166II | GTNNAC | 1 cut(s) | 931 |
| Hpy188I | TCNGA | 8 cut(s) | 61, 94, 182, 258, 706, 751, 779, 846 |
| Hpy188III | TCNNGA | 7 cut(s) | 161, 218, 433, 544, 559, 644, 1064 |
| Hpy8I | GTNNAC | 1 cut(s) | 931 |
| Hpy99I | CGWCG | 2 cut(s) | 20, 186 |
| HpyAV | CCTTC | 3 cut(s) | 131, 217, 896 |
| HpyCH4III | ACNGT | 4 cut(s) | 150, 224, 483, 949 |
| HpyCH4IV | ACGT | 5 cut(s) | 18, 262, 654, 933, 980 |
| HpyCH4V | TGCA | 6 cut(s) | 169, 325, 610, 621, 685, 793 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 32, 44, 449, 627, 799, 859 |
| HpyF3I | CTNAG | 8 cut(s) | 111, 159, 887, 897, 919, 1047, 1126, 1134 |
| HpySE526I | ACGT | 5 cut(s) | 18, 262, 654, 933, 980 |
| Hsp92II | CATG | 6 cut(s) | 367, 436, 515, 524, 614, 647 |
| Ksp22I | TGATCA | 1 cut(s) | 472 |
| Kzo9I | GATC | 9 cut(s) | 163, 253, 265, 346, 472, 561, 701, 751, 770 |
| LmnI | GCTCC | 5 cut(s) | 95, 177, 203, 316, 1117 |
| Lsp1109I | GCAGC | 4 cut(s) | 181, 309, 337, 1012 |
| LweI | GCATC | 3 cut(s) | 47, 195, 661 |
| MaeI | CTAG | 4 cut(s) | 50, 413, 914, 1029 |
| MaeII | ACGT | 5 cut(s) | 18, 262, 654, 933, 980 |
| MaeIII | GTNAC | 2 cut(s) | 19, 821 |
| MalI | GATC | 9 cut(s) | 165, 255, 267, 348, 474, 563, 703, 753, 772 |
| MboI | GATC | 9 cut(s) | 163, 253, 265, 346, 472, 561, 701, 751, 770 |
| MboII | GAAGA | 4 cut(s) | 356, 428, 626, 746 |
| MflI | RGATCY | 2 cut(s) | 163, 346 |
| MhlI | GDGCHC | 1 cut(s) | 59 |
| MlsI | TGGCCA | 1 cut(s) | 128 |
| MluCI | AATT | 4 cut(s) | 501, 604, 998, 1079 |
| MluNI | TGGCCA | 1 cut(s) | 128 |
| MlyI | GAGTC | 2 cut(s) | 547, 947 |
| MmeI | TCCRAC | 2 cut(s) | 117, 205 |
| MnlI | CCTC | 5 cut(s) | 281, 360, 819, 892, 1112 |
| Mox20I | TGGCCA | 1 cut(s) | 128 |
| MscI | TGGCCA | 1 cut(s) | 128 |
| MseI | TTAA | 2 cut(s) | 303, 1008 |
| MslI | CAYNNNNRTG | 1 cut(s) | 362 |
| Msp20I | TGGCCA | 1 cut(s) | 128 |
| MspI | CCGG | 2 cut(s) | 314, 1115 |
| MspR9I | CCNGG | 5 cut(s) | 341, 570, 677, 741, 1116 |
| Mva1269I | GAATGC | 1 cut(s) | 100 |
| MvaI | CCWGG | 4 cut(s) | 341, 570, 677, 741 |
| MvnI | CGCG | 1 cut(s) | 35 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 32, 44, 449, 627, 799, 859 |
| NciI | CCSGG | 1 cut(s) | 1116 |
| NdeII | GATC | 9 cut(s) | 163, 253, 265, 346, 472, 561, 701, 751, 770 |
| NheI | GCTAGC | 1 cut(s) | 1028 |
| NlaIII | CATG | 6 cut(s) | 367, 436, 515, 524, 614, 647 |
| NlaIV | GGNNCC | 1 cut(s) | 205 |
| PagI | TCATGA | 2 cut(s) | 432, 643 |
| PceI | AGGCCT | 3 cut(s) | 789, 892, 964 |
| PctI | GAATGC | 1 cut(s) | 100 |
| PfeI | GAWTC | 2 cut(s) | 367, 496 |
| PfoI | TCCNGGA | 2 cut(s) | 568, 1114 |
| PkrI | GCNGC | 6 cut(s) | 37, 171, 236, 324, 327, 1027 |
| Ple19I | CGATCG | 1 cut(s) | 704 |
| PleI | GAGTC | 2 cut(s) | 547, 946 |
| PpsI | GAGTC | 2 cut(s) | 547, 946 |
| Psp6I | CCWGG | 4 cut(s) | 339, 568, 675, 739 |
| PspGI | CCWGG | 4 cut(s) | 339, 568, 675, 739 |
| PspN4I | GGNNCC | 1 cut(s) | 205 |
| PspPI | GGNCC | 1 cut(s) | 290 |
| PstI | CTGCAG | 2 cut(s) | 171, 327 |
| PstNI | CAGNNNCTG | 1 cut(s) | 166 |
| PsuI | RGATCY | 2 cut(s) | 163, 346 |
| PvuI | CGATCG | 1 cut(s) | 704 |
| RsaI | GTAC | 1 cut(s) | 226 |
| RsaNI | GTAC | 1 cut(s) | 225 |
| RseI | CAYNNNNRTG | 1 cut(s) | 362 |
| SaqAI | TTAA | 2 cut(s) | 303, 1008 |
| SatI | GCNGC | 6 cut(s) | 36, 170, 235, 323, 326, 1026 |
| Sau3AI | GATC | 9 cut(s) | 163, 253, 265, 346, 472, 561, 701, 751, 770 |
| Sau96I | GGNCC | 1 cut(s) | 290 |
| SchI | GAGTC | 2 cut(s) | 547, 947 |
| ScrFI | CCNGG | 5 cut(s) | 341, 570, 677, 741, 1116 |
| SduI | GDGCHC | 1 cut(s) | 59 |
| SfaNI | GCATC | 3 cut(s) | 47, 195, 661 |
| SfcI | CTRYAG | 2 cut(s) | 167, 323 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 362 |
| SmlI | CTYRAG | 1 cut(s) | 557 |
| SmoI | CTYRAG | 1 cut(s) | 557 |
| Sse9I | AATT | 4 cut(s) | 501, 604, 998, 1079 |
| SseBI | AGGCCT | 3 cut(s) | 789, 892, 964 |
| SsiI | CCGC | 7 cut(s) | 24, 35, 53, 235, 404, 800, 856 |
| SspMI | CTAG | 4 cut(s) | 50, 413, 914, 1029 |
| StuI | AGGCCT | 3 cut(s) | 789, 892, 964 |
| StyD4I | CCNGG | 5 cut(s) | 339, 568, 675, 739, 1114 |
| StyI | CCWWGG | 1 cut(s) | 229 |
| TaaI | ACNGT | 4 cut(s) | 150, 224, 483, 949 |
| TaiI | ACGT | 5 cut(s) | 21, 265, 657, 936, 983 |
| TaqI | TCGA | 1 cut(s) | 268 |
| TasI | AATT | 4 cut(s) | 501, 604, 998, 1079 |
| TauI | GCSGC | 2 cut(s) | 38, 237 |
| TfiI | GAWTC | 2 cut(s) | 367, 496 |
| Tru1I | TTAA | 2 cut(s) | 303, 1008 |
| Tru9I | TTAA | 2 cut(s) | 303, 1008 |
| TseI | GCWGC | 4 cut(s) | 169, 322, 325, 1025 |
| TspDTI | ATGAA | 6 cut(s) | 380, 449, 500, 615, 632, 660 |
| TspGWI | ACGGA | 1 cut(s) | 565 |
| XapI | RAATTY | 4 cut(s) | 501, 604, 998, 1079 |
| XspI | CTAG | 4 cut(s) | 50, 413, 914, 1029 |