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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 52 |
| Acc36I | ACCTGC | 2 cut(s) | 843, 1027 |
| Acc65I | GGTACC | 1 cut(s) | 817 |
| AccB1I | GGYRCC | 1 cut(s) | 817 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 347 |
| AccI | GTMKAC | 1 cut(s) | 44 |
| AciI | CCGC | 4 cut(s) | 9, 21, 602, 769 |
| AclWI | GGATC | 2 cut(s) | 1089, 1102 |
| AcsI | RAATTY | 2 cut(s) | 280, 303 |
| AcuI | CTGAAG | 2 cut(s) | 816, 1158 |
| AcyI | GRCGYC | 1 cut(s) | 53 |
| AdeI | CACNNNGTG | 1 cut(s) | 1004 |
| AfaI | GTAC | 3 cut(s) | 750, 819, 1017 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 347, 939 |
| AflIII | ACRYGT | 1 cut(s) | 411 |
| AgeI | ACCGGT | 2 cut(s) | 577, 852 |
| AgsI | TTSAA | 4 cut(s) | 286, 316, 658, 881 |
| AjnI | CCWGG | 3 cut(s) | 102, 678, 1000 |
| AluBI | AGCT | 4 cut(s) | 147, 566, 613, 877 |
| AluI | AGCT | 4 cut(s) | 147, 566, 613, 877 |
| Alw21I | GWGCWC | 1 cut(s) | 217 |
| Alw26I | GTCTC | 5 cut(s) | 363, 689, 723, 731, 843 |
| AlwI | GGATC | 2 cut(s) | 1089, 1102 |
| AoxI | GGCC | 1 cut(s) | 10 |
| ApeKI | GCWGC | 1 cut(s) | 275 |
| ApoI | RAATTY | 2 cut(s) | 280, 303 |
| AsiGI | ACCGGT | 2 cut(s) | 577, 852 |
| Asp718I | GGTACC | 1 cut(s) | 817 |
| AsuHPI | GGTGA | 3 cut(s) | 408, 557, 572 |
| BamHI | GGATCC | 1 cut(s) | 1094 |
| BanI | GGYRCC | 1 cut(s) | 817 |
| BauI | CACGAG | 1 cut(s) | 503 |
| BbsI | GAAGAC | 1 cut(s) | 1090 |
| Bbv12I | GWGCWC | 1 cut(s) | 217 |
| BbvI | GCAGC | 1 cut(s) | 262 |
| BccI | CCATC | 3 cut(s) | 341, 370, 656 |
| BceAI | ACGGC | 1 cut(s) | 43 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 685, 719 |
| BciT130I | CCWGG | 3 cut(s) | 104, 680, 1002 |
| BcoDI | GTCTC | 5 cut(s) | 363, 689, 723, 731, 843 |
| BfaI | CTAG | 1 cut(s) | 33 |
| BfmI | CTRYAG | 2 cut(s) | 369, 1020 |
| BfuAI | ACCTGC | 2 cut(s) | 843, 1027 |
| BglII | AGATCT | 1 cut(s) | 94 |
| BisI | GCNGC | 4 cut(s) | 10, 21, 276, 603 |
| BlpI | GCTNAGC | 1 cut(s) | 5 |
| BlsI | GCNGC | 4 cut(s) | 11, 22, 277, 604 |
| Bme1390I | CCNGG | 3 cut(s) | 104, 680, 1002 |
| BmiI | GGNNCC | 4 cut(s) | 649, 733, 819, 1096 |
| BmrFI | CCNGG | 3 cut(s) | 104, 680, 1002 |
| BmrI | ACTGGG | 1 cut(s) | 223 |
| BmsI | GCATC | 2 cut(s) | 116, 411 |
| BmuI | ACTGGG | 1 cut(s) | 223 |
| BpiI | GAAGAC | 1 cut(s) | 1090 |
| BpmI | CTGGAG | 1 cut(s) | 576 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 5 |
| BsaHI | GRCGYC | 1 cut(s) | 53 |
| BsaI | GGTCTC | 3 cut(s) | 689, 723, 843 |
| BsaJI | CCNNGG | 3 cut(s) | 48, 198, 679 |
| BsaWI | WCCGGW | 2 cut(s) | 577, 852 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 574, 604 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 347, 939 |
| Bse118I | RCCGGY | 4 cut(s) | 418, 577, 598, 852 |
| Bse1I | ACTGG | 3 cut(s) | 229, 707, 821 |
| Bse3DI | GCAATG | 1 cut(s) | 808 |
| BseBI | CCWGG | 3 cut(s) | 104, 680, 1002 |
| BseDI | CCNNGG | 3 cut(s) | 48, 198, 679 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 347, 939 |
| BseMI | GCAATG | 1 cut(s) | 808 |
| BseMII | CTCAG | 1 cut(s) | 942 |
| BseNI | ACTGG | 3 cut(s) | 229, 707, 821 |
| BseRI | GAGGAG | 1 cut(s) | 395 |
| BseXI | GCAGC | 1 cut(s) | 262 |
| BsgI | GTGCAG | 1 cut(s) | 795 |
| BshFI | GGCC | 1 cut(s) | 12 |
| BshNI | GGYRCC | 1 cut(s) | 817 |
| BshTI | ACCGGT | 2 cut(s) | 577, 852 |
| BsiHKAI | GWGCWC | 1 cut(s) | 217 |
| BsiSI | CCGG | 4 cut(s) | 419, 578, 599, 853 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 347, 939 |
| BsmAI | GTCTC | 5 cut(s) | 363, 689, 723, 731, 843 |
| BsmBI | CGTCTC | 1 cut(s) | 363 |
| BsnI | GGCC | 1 cut(s) | 12 |
| Bso31I | GGTCTC | 3 cut(s) | 689, 723, 843 |
| Bsp1286I | GDGCHC | 1 cut(s) | 217 |
| Bsp143I | GATC | 2 cut(s) | 94, 1094 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 5 |
| Bsp19I | CCATGG | 1 cut(s) | 198 |
| BspACI | CCGC | 4 cut(s) | 9, 21, 602, 769 |
| BspANI | GGCC | 1 cut(s) | 12 |
| BspCNI | CTCAG | 1 cut(s) | 943 |
| BspHI | TCATGA | 1 cut(s) | 538 |
| BspLI | GGNNCC | 4 cut(s) | 649, 733, 819, 1096 |
| BspMAI | CTGCAG | 1 cut(s) | 1024 |
| BspMI | ACCTGC | 2 cut(s) | 843, 1027 |
| BspPI | GGATC | 2 cut(s) | 1089, 1102 |
| BspT107I | GGYRCC | 1 cut(s) | 817 |
| BspTNI | GGTCTC | 3 cut(s) | 689, 723, 843 |
| BsrDI | GCAATG | 1 cut(s) | 808 |
| BsrFI | RCCGGY | 4 cut(s) | 418, 577, 598, 852 |
| BsrI | ACTGG | 3 cut(s) | 229, 707, 821 |
| BssAI | RCCGGY | 4 cut(s) | 418, 577, 598, 852 |
| BssECI | CCNNGG | 3 cut(s) | 48, 198, 679 |
| BssMI | GATC | 2 cut(s) | 94, 1094 |
| BssNI | GRCGYC | 1 cut(s) | 53 |
| BssSI | CACGAG | 1 cut(s) | 503 |
| BssT1I | CCWWGG | 2 cut(s) | 48, 198 |
| Bst2BI | CACGAG | 1 cut(s) | 503 |
| Bst2UI | CCWGG | 3 cut(s) | 104, 680, 1002 |
| Bst6I | CTCTTC | 3 cut(s) | 88, 199, 1070 |
| BstACI | GRCGYC | 1 cut(s) | 53 |
| BstC8I | GCNNGC | 2 cut(s) | 553, 840 |
| BstDEI | CTNAG | 2 cut(s) | 5, 951 |
| BstDSI | CCRYGG | 1 cut(s) | 198 |
| BstKTI | GATC | 2 cut(s) | 97, 1097 |
| BstMAI | GTCTC | 5 cut(s) | 363, 689, 723, 731, 843 |
| BstMBI | GATC | 2 cut(s) | 94, 1094 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 64, 593, 602, 915 |
| BstNI | CCWGG | 3 cut(s) | 104, 680, 1002 |
| BstNSI | RCATGY | 2 cut(s) | 415, 555 |
| BstSCI | CCNGG | 3 cut(s) | 102, 678, 1000 |
| BstSFI | CTRYAG | 2 cut(s) | 369, 1020 |
| BstV1I | GCAGC | 1 cut(s) | 262 |
| BstV2I | GAAGAC | 1 cut(s) | 1090 |
| BstX2I | RGATCY | 2 cut(s) | 94, 1094 |
| BstYI | RGATCY | 2 cut(s) | 94, 1094 |
| BsuRI | GGCC | 1 cut(s) | 12 |
| BtgI | CCRYGG | 1 cut(s) | 198 |
| BtsI | GCAGTG | 2 cut(s) | 582, 778 |
| BtsIMutI | CAGTG | 5 cut(s) | 582, 778, 828, 828, 976 |
| BveI | ACCTGC | 2 cut(s) | 843, 1027 |
| Cac8I | GCNNGC | 2 cut(s) | 553, 840 |
| CciI | TCATGA | 1 cut(s) | 538 |
| Cfr10I | RCCGGY | 4 cut(s) | 418, 577, 598, 852 |
| CseI | GACGC | 1 cut(s) | 42 |
| CsiI | ACCWGGT | 1 cut(s) | 1000 |
| Csp6I | GTAC | 3 cut(s) | 749, 818, 1016 |
| CspAI | ACCGGT | 2 cut(s) | 577, 852 |
| CviAII | CATG | 4 cut(s) | 199, 412, 539, 552 |
| CviQI | GTAC | 3 cut(s) | 749, 818, 1016 |
| DdeI | CTNAG | 2 cut(s) | 5, 951 |
| DpnI | GATC | 2 cut(s) | 96, 1096 |
| DpnII | GATC | 2 cut(s) | 94, 1094 |
| DraIII | CACNNNGTG | 1 cut(s) | 1004 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 52 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 52 |
| Eam1104I | CTCTTC | 3 cut(s) | 88, 199, 1070 |
| EarI | CTCTTC | 3 cut(s) | 88, 199, 1070 |
| Eco130I | CCWWGG | 2 cut(s) | 48, 198 |
| Eco31I | GGTCTC | 3 cut(s) | 689, 723, 843 |
| Eco57I | CTGAAG | 2 cut(s) | 816, 1158 |
| EcoRII | CCWGG | 3 cut(s) | 102, 678, 1000 |
| EcoT14I | CCWWGG | 2 cut(s) | 48, 198 |
| ErhI | CCWWGG | 2 cut(s) | 48, 198 |
| Esp3I | CGTCTC | 1 cut(s) | 363 |
| FaeI | CATG | 4 cut(s) | 202, 415, 542, 555 |
| FatI | CATG | 4 cut(s) | 198, 411, 538, 551 |
| FauNDI | CATATG | 2 cut(s) | 343, 424 |
| FblI | GTMKAC | 1 cut(s) | 44 |
| Fnu4HI | GCNGC | 4 cut(s) | 10, 21, 276, 603 |
| Fsp4HI | GCNGC | 4 cut(s) | 10, 21, 276, 603 |
| FspBI | CTAG | 1 cut(s) | 33 |
| GluI | GCNGC | 4 cut(s) | 10, 21, 276, 603 |
| GsuI | CTGGAG | 1 cut(s) | 576 |
| HaeIII | GGCC | 1 cut(s) | 12 |
| HapII | CCGG | 4 cut(s) | 419, 578, 599, 853 |
| HgaI | GACGC | 1 cut(s) | 42 |
| Hin1I | GRCGYC | 1 cut(s) | 53 |
| Hin1II | CATG | 4 cut(s) | 202, 415, 542, 555 |
| HincII | GTYRAC | 2 cut(s) | 45, 187 |
| HindII | GTYRAC | 2 cut(s) | 45, 187 |
| HindIII | AAGCTT | 2 cut(s) | 145, 875 |
| HinfI | GANTC | 1 cut(s) | 697 |
| HpaII | CCGG | 4 cut(s) | 419, 578, 599, 853 |
| HphI | GGTGA | 3 cut(s) | 408, 557, 572 |
| Hpy166II | GTNNAC | 5 cut(s) | 45, 187, 484, 826, 1067 |
| Hpy188I | TCNGA | 1 cut(s) | 78 |
| Hpy188III | TCNNGA | 5 cut(s) | 98, 539, 645, 1147, 1164 |
| Hpy8I | GTNNAC | 5 cut(s) | 45, 187, 484, 826, 1067 |
| Hpy99I | CGWCG | 2 cut(s) | 46, 58 |
| HpyAV | CCTTC | 5 cut(s) | 78, 200, 791, 873, 899 |
| HpyCH4IV | ACGT | 2 cut(s) | 41, 450 |
| HpyCH4V | TGCA | 6 cut(s) | 555, 776, 838, 974, 1022, 1048 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 64, 593, 602, 915 |
| HpyF3I | CTNAG | 2 cut(s) | 5, 951 |
| HpySE526I | ACGT | 2 cut(s) | 41, 450 |
| Hsp92I | GRCGYC | 1 cut(s) | 53 |
| Hsp92II | CATG | 4 cut(s) | 202, 415, 542, 555 |
| KpnI | GGTACC | 1 cut(s) | 821 |
| Kzo9I | GATC | 2 cut(s) | 94, 1094 |
| LmnI | GCTCC | 2 cut(s) | 212, 931 |
| Lsp1109I | GCAGC | 1 cut(s) | 262 |
| LweI | GCATC | 2 cut(s) | 116, 411 |
| MabI | ACCWGGT | 1 cut(s) | 1000 |
| MaeI | CTAG | 1 cut(s) | 33 |
| MaeII | ACGT | 2 cut(s) | 41, 450 |
| MaeIII | GTNAC | 5 cut(s) | 136, 414, 451, 580, 790 |
| MalI | GATC | 2 cut(s) | 96, 1096 |
| MboI | GATC | 2 cut(s) | 94, 1094 |
| MboII | GAAGA | 8 cut(s) | 75, 186, 382, 692, 1087, 1095, 1135, 1151 |
| MflI | RGATCY | 2 cut(s) | 94, 1094 |
| MhlI | GDGCHC | 1 cut(s) | 217 |
| MluCI | AATT | 6 cut(s) | 280, 303, 468, 653, 806, 881 |
| MmeI | TCCRAC | 2 cut(s) | 101, 147 |
| MseI | TTAA | 2 cut(s) | 254, 621 |
| MslI | CAYNNNNRTG | 2 cut(s) | 410, 543 |
| MspI | CCGG | 4 cut(s) | 419, 578, 599, 853 |
| MspR9I | CCNGG | 3 cut(s) | 104, 680, 1002 |
| MvaI | CCWGG | 3 cut(s) | 104, 680, 1002 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 64, 593, 602, 915 |
| NcoI | CCATGG | 1 cut(s) | 198 |
| NdeI | CATATG | 2 cut(s) | 343, 424 |
| NdeII | GATC | 2 cut(s) | 94, 1094 |
| NlaIII | CATG | 4 cut(s) | 202, 415, 542, 555 |
| NlaIV | GGNNCC | 4 cut(s) | 649, 733, 819, 1096 |
| NmuCI | GTSAC | 3 cut(s) | 414, 451, 580 |
| NspI | RCATGY | 2 cut(s) | 415, 555 |
| PaeI | GCATGC | 1 cut(s) | 555 |
| PagI | TCATGA | 1 cut(s) | 538 |
| PciI | ACATGT | 1 cut(s) | 411 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 50 |
| PfeI | GAWTC | 1 cut(s) | 697 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 347 |
| PinAI | ACCGGT | 2 cut(s) | 577, 852 |
| PkrI | GCNGC | 4 cut(s) | 11, 22, 277, 604 |
| PscI | ACATGT | 1 cut(s) | 411 |
| Psp6I | CCWGG | 3 cut(s) | 102, 678, 1000 |
| PspGI | CCWGG | 3 cut(s) | 102, 678, 1000 |
| PspN4I | GGNNCC | 4 cut(s) | 649, 733, 819, 1096 |
| PstI | CTGCAG | 1 cut(s) | 1024 |
| PsuI | RGATCY | 2 cut(s) | 94, 1094 |
| RsaI | GTAC | 3 cut(s) | 750, 819, 1017 |
| RsaNI | GTAC | 3 cut(s) | 749, 818, 1016 |
| RseI | CAYNNNNRTG | 2 cut(s) | 410, 543 |
| SalI | GTCGAC | 1 cut(s) | 43 |
| SaqAI | TTAA | 2 cut(s) | 254, 621 |
| SatI | GCNGC | 4 cut(s) | 10, 21, 276, 603 |
| Sau3AI | GATC | 2 cut(s) | 94, 1094 |
| ScrFI | CCNGG | 3 cut(s) | 104, 680, 1002 |
| SduI | GDGCHC | 1 cut(s) | 217 |
| SexAI | ACCWGGT | 1 cut(s) | 1000 |
| SfaNI | GCATC | 2 cut(s) | 116, 411 |
| SfcI | CTRYAG | 2 cut(s) | 369, 1020 |
| SgrAI | CRCCGGYG | 1 cut(s) | 598 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 410, 543 |
| SphI | GCATGC | 1 cut(s) | 555 |
| Sse9I | AATT | 6 cut(s) | 280, 303, 468, 653, 806, 881 |
| SsiI | CCGC | 4 cut(s) | 9, 21, 602, 769 |
| SspMI | CTAG | 1 cut(s) | 33 |
| StyD4I | CCNGG | 3 cut(s) | 102, 678, 1000 |
| StyI | CCWWGG | 2 cut(s) | 48, 198 |
| TaiI | ACGT | 2 cut(s) | 44, 453 |
| TaqI | TCGA | 2 cut(s) | 44, 220 |
| TasI | AATT | 6 cut(s) | 280, 303, 468, 653, 806, 881 |
| TauI | GCSGC | 3 cut(s) | 12, 23, 605 |
| TfiI | GAWTC | 1 cut(s) | 697 |
| Tru1I | TTAA | 2 cut(s) | 254, 621 |
| Tru9I | TTAA | 2 cut(s) | 254, 621 |
| TscAI | CASTG | 5 cut(s) | 589, 778, 828, 835, 976 |
| TseFI | GTSAC | 3 cut(s) | 414, 451, 580 |
| TseI | GCWGC | 1 cut(s) | 275 |
| Tsp45I | GTSAC | 3 cut(s) | 414, 451, 580 |
| TspDTI | ATGAA | 2 cut(s) | 441, 819 |
| TspRI | CASTG | 5 cut(s) | 589, 778, 828, 835, 976 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 347 |
| XapI | RAATTY | 2 cut(s) | 280, 303 |
| XceI | RCATGY | 2 cut(s) | 415, 555 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 344, 659 |
| XmiI | GTMKAC | 1 cut(s) | 44 |
| XspI | CTAG | 1 cut(s) | 33 |