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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 839 |
| Acc36I | ACCTGC | 2 cut(s) | 160, 563 |
| AciI | CCGC | 3 cut(s) | 93, 238, 504 |
| AclWI | GGATC | 2 cut(s) | 103, 211 |
| AcsI | RAATTY | 1 cut(s) | 581 |
| AcuI | CTGAAG | 1 cut(s) | 833 |
| AcyI | GRCGYC | 1 cut(s) | 658 |
| AfaI | GTAC | 3 cut(s) | 315, 794, 819 |
| AflIII | ACRYGT | 1 cut(s) | 848 |
| AgsI | TTSAA | 3 cut(s) | 214, 362, 580 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 691 |
| AjnI | CCWGG | 2 cut(s) | 585, 689 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 588, 620 |
| AluBI | AGCT | 6 cut(s) | 131, 158, 470, 626, 874, 965 |
| AluI | AGCT | 6 cut(s) | 131, 158, 470, 626, 874, 965 |
| Alw21I | GWGCWC | 3 cut(s) | 628, 682, 765 |
| AlwI | GGATC | 2 cut(s) | 103, 211 |
| AoxI | GGCC | 4 cut(s) | 45, 518, 589, 783 |
| ApeKI | GCWGC | 4 cut(s) | 143, 155, 459, 467 |
| ApoI | RAATTY | 1 cut(s) | 581 |
| AspLEI | GCGC | 1 cut(s) | 232 |
| AspS9I | GGNCC | 3 cut(s) | 46, 589, 744 |
| AsuHPI | GGTGA | 2 cut(s) | 79, 757 |
| AvaII | GGWCC | 1 cut(s) | 744 |
| BanII | GRGCYC | 1 cut(s) | 628 |
| BbsI | GAAGAC | 1 cut(s) | 687 |
| Bbv12I | GWGCWC | 3 cut(s) | 628, 682, 765 |
| BbvI | GCAGC | 4 cut(s) | 155, 167, 446, 479 |
| BccI | CCATC | 3 cut(s) | 47, 467, 916 |
| BceAI | ACGGC | 1 cut(s) | 96 |
| BciT130I | CCWGG | 2 cut(s) | 587, 691 |
| BfaI | CTAG | 5 cut(s) | 50, 128, 531, 702, 935 |
| BfmI | CTRYAG | 3 cut(s) | 153, 465, 556 |
| BfoI | RGCGCY | 1 cut(s) | 233 |
| BfuAI | ACCTGC | 2 cut(s) | 160, 563 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 344 |
| BisI | GCNGC | 4 cut(s) | 144, 156, 460, 468 |
| BlsI | GCNGC | 4 cut(s) | 145, 157, 461, 469 |
| BmcAI | AGTACT | 1 cut(s) | 794 |
| Bme1390I | CCNGG | 2 cut(s) | 587, 691 |
| Bme18I | GGWCC | 1 cut(s) | 744 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 691 |
| BmgT120I | GGNCC | 3 cut(s) | 46, 589, 744 |
| BmiI | GGNNCC | 3 cut(s) | 729, 745, 951 |
| BmrFI | CCNGG | 2 cut(s) | 587, 691 |
| BmrI | ACTGGG | 2 cut(s) | 596, 784 |
| BmuI | ACTGGG | 2 cut(s) | 596, 784 |
| BpiI | GAAGAC | 1 cut(s) | 687 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 960 |
| Bpu10I | CCTNAGC | 1 cut(s) | 681 |
| Bsa29I | ATCGAT | 1 cut(s) | 12 |
| BsaHI | GRCGYC | 1 cut(s) | 658 |
| BsaJI | CCNNGG | 4 cut(s) | 42, 488, 586, 955 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 728, 758 |
| Bse1I | ACTGG | 4 cut(s) | 369, 602, 658, 790 |
| Bse3DI | GCAATG | 2 cut(s) | 90, 333 |
| BseBI | CCWGG | 2 cut(s) | 587, 691 |
| BseCI | ATCGAT | 1 cut(s) | 12 |
| BseDI | CCNNGG | 4 cut(s) | 42, 488, 586, 955 |
| BseGI | GGATG | 4 cut(s) | 294, 373, 797, 927 |
| BseMI | GCAATG | 2 cut(s) | 90, 333 |
| BseMII | CTCAG | 2 cut(s) | 113, 695 |
| BseNI | ACTGG | 4 cut(s) | 369, 602, 658, 790 |
| BseXI | GCAGC | 4 cut(s) | 155, 167, 446, 479 |
| BseYI | CCCAGC | 1 cut(s) | 347 |
| BshFI | GGCC | 4 cut(s) | 47, 520, 591, 785 |
| BshVI | ATCGAT | 1 cut(s) | 12 |
| BsiHKAI | GWGCWC | 3 cut(s) | 628, 682, 765 |
| BsiSI | CCGG | 2 cut(s) | 521, 884 |
| BsnI | GGCC | 4 cut(s) | 47, 520, 591, 785 |
| Bsp1286I | GDGCHC | 3 cut(s) | 628, 682, 765 |
| Bsp143I | GATC | 4 cut(s) | 95, 166, 216, 256 |
| Bsp19I | CCATGG | 1 cut(s) | 488 |
| BspACI | CCGC | 3 cut(s) | 93, 238, 504 |
| BspANI | GGCC | 4 cut(s) | 47, 520, 591, 785 |
| BspCNI | CTCAG | 2 cut(s) | 112, 694 |
| BspDI | ATCGAT | 1 cut(s) | 12 |
| BspLI | GGNNCC | 3 cut(s) | 729, 745, 951 |
| BspMAI | CTGCAG | 3 cut(s) | 157, 469, 560 |
| BspMI | ACCTGC | 2 cut(s) | 160, 563 |
| BspPI | GGATC | 2 cut(s) | 103, 211 |
| BspQI | GCTCTTC | 1 cut(s) | 138 |
| BsrDI | GCAATG | 2 cut(s) | 90, 333 |
| BsrI | ACTGG | 4 cut(s) | 369, 602, 658, 790 |
| BssECI | CCNNGG | 4 cut(s) | 42, 488, 586, 955 |
| BssMI | GATC | 4 cut(s) | 95, 166, 216, 256 |
| BssNI | GRCGYC | 1 cut(s) | 658 |
| BssT1I | CCWWGG | 3 cut(s) | 42, 488, 955 |
| Bst2UI | CCWGG | 2 cut(s) | 587, 691 |
| Bst6I | CTCTTC | 1 cut(s) | 138 |
| BstACI | GRCGYC | 1 cut(s) | 658 |
| BstC8I | GCNNGC | 2 cut(s) | 91, 678 |
| BstDEI | CTNAG | 2 cut(s) | 99, 681 |
| BstDSI | CCRYGG | 1 cut(s) | 488 |
| BstF5I | GGATG | 4 cut(s) | 294, 373, 797, 927 |
| BstH2I | RGCGCY | 1 cut(s) | 233 |
| BstHHI | GCGC | 1 cut(s) | 232 |
| BstKTI | GATC | 4 cut(s) | 98, 169, 219, 259 |
| BstMBI | GATC | 4 cut(s) | 95, 166, 216, 256 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 32, 152, 344, 880 |
| BstNI | CCWGG | 2 cut(s) | 587, 691 |
| BstNSI | RCATGY | 2 cut(s) | 852, 862 |
| BstSCI | CCNGG | 2 cut(s) | 585, 689 |
| BstSFI | CTRYAG | 3 cut(s) | 153, 465, 556 |
| BstV1I | GCAGC | 4 cut(s) | 155, 167, 446, 479 |
| BstV2I | GAAGAC | 1 cut(s) | 687 |
| BstX2I | RGATCY | 2 cut(s) | 95, 216 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 452 |
| BstYI | RGATCY | 2 cut(s) | 95, 216 |
| Bsu15I | ATCGAT | 1 cut(s) | 12 |
| BsuRI | GGCC | 4 cut(s) | 47, 520, 591, 785 |
| BsuTUI | ATCGAT | 1 cut(s) | 12 |
| BtgI | CCRYGG | 1 cut(s) | 488 |
| BtsCI | GGATG | 4 cut(s) | 294, 373, 797, 927 |
| BtsI | GCAGTG | 2 cut(s) | 21, 489 |
| BtsIMutI | CAGTG | 2 cut(s) | 21, 489 |
| BveI | ACCTGC | 2 cut(s) | 160, 563 |
| Cac8I | GCNNGC | 2 cut(s) | 91, 678 |
| CfoI | GCGC | 1 cut(s) | 232 |
| Cfr13I | GGNCC | 3 cut(s) | 46, 589, 744 |
| ClaI | ATCGAT | 1 cut(s) | 12 |
| CseI | GACGC | 2 cut(s) | 92, 666 |
| CsiI | ACCWGGT | 1 cut(s) | 689 |
| Csp6I | GTAC | 3 cut(s) | 314, 793, 818 |
| CviAII | CATG | 5 cut(s) | 446, 489, 500, 849, 859 |
| CviQI | GTAC | 3 cut(s) | 314, 793, 818 |
| DdeI | CTNAG | 2 cut(s) | 99, 681 |
| DpnI | GATC | 4 cut(s) | 97, 168, 218, 258 |
| DpnII | GATC | 4 cut(s) | 95, 166, 216, 256 |
| DriI | GACNNNNNGTC | 1 cut(s) | 691 |
| Eam1104I | CTCTTC | 1 cut(s) | 138 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 691 |
| EarI | CTCTTC | 1 cut(s) | 138 |
| EciI | GGCGGA | 1 cut(s) | 108 |
| Ecl136II | GAGCTC | 1 cut(s) | 626 |
| Eco130I | CCWWGG | 3 cut(s) | 42, 488, 955 |
| Eco24I | GRGCYC | 1 cut(s) | 628 |
| Eco47I | GGWCC | 1 cut(s) | 744 |
| Eco53kI | GAGCTC | 1 cut(s) | 626 |
| Eco57I | CTGAAG | 1 cut(s) | 833 |
| EcoICRI | GAGCTC | 1 cut(s) | 626 |
| EcoO109I | RGGNCCY | 1 cut(s) | 589 |
| EcoRII | CCWGG | 2 cut(s) | 585, 689 |
| EcoT14I | CCWWGG | 3 cut(s) | 42, 488, 955 |
| EcoT38I | GRGCYC | 1 cut(s) | 628 |
| ErhI | CCWWGG | 3 cut(s) | 42, 488, 955 |
| FaeI | CATG | 5 cut(s) | 449, 492, 503, 852, 862 |
| FatI | CATG | 5 cut(s) | 445, 488, 499, 848, 858 |
| Fnu4HI | GCNGC | 4 cut(s) | 144, 156, 460, 468 |
| FokI | GGATG | 4 cut(s) | 281, 380, 784, 934 |
| FriOI | GRGCYC | 1 cut(s) | 628 |
| Fsp4HI | GCNGC | 4 cut(s) | 144, 156, 460, 468 |
| FspBI | CTAG | 5 cut(s) | 50, 128, 531, 702, 935 |
| GlaI | GCGC | 1 cut(s) | 231 |
| GluI | GCNGC | 4 cut(s) | 144, 156, 460, 468 |
| GsaI | CCCAGC | 1 cut(s) | 351 |
| HaeII | RGCGCY | 1 cut(s) | 233 |
| HaeIII | GGCC | 4 cut(s) | 47, 520, 591, 785 |
| HapII | CCGG | 2 cut(s) | 521, 884 |
| HgaI | GACGC | 2 cut(s) | 92, 666 |
| HhaI | GCGC | 1 cut(s) | 232 |
| Hin1I | GRCGYC | 1 cut(s) | 658 |
| Hin1II | CATG | 5 cut(s) | 449, 492, 503, 852, 862 |
| Hin6I | GCGC | 1 cut(s) | 230 |
| HinP1I | GCGC | 1 cut(s) | 230 |
| HinfI | GANTC | 1 cut(s) | 561 |
| HpaII | CCGG | 2 cut(s) | 521, 884 |
| HphI | GGTGA | 2 cut(s) | 79, 757 |
| Hpy166II | GTNNAC | 2 cut(s) | 891, 974 |
| Hpy188I | TCNGA | 2 cut(s) | 171, 980 |
| Hpy188III | TCNNGA | 5 cut(s) | 214, 266, 328, 509, 683 |
| Hpy8I | GTNNAC | 2 cut(s) | 891, 974 |
| Hpy99I | CGWCG | 1 cut(s) | 108 |
| HpyAV | CCTTC | 5 cut(s) | 40, 272, 388, 546, 808 |
| HpyCH4IV | ACGT | 2 cut(s) | 316, 645 |
| HpyCH4V | TGCA | 5 cut(s) | 115, 155, 423, 467, 558 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 32, 152, 344, 880 |
| HpyF3I | CTNAG | 2 cut(s) | 99, 681 |
| HpySE526I | ACGT | 2 cut(s) | 316, 645 |
| Hsp92I | GRCGYC | 1 cut(s) | 658 |
| Hsp92II | CATG | 5 cut(s) | 449, 492, 503, 852, 862 |
| HspAI | GCGC | 1 cut(s) | 230 |
| Kzo9I | GATC | 4 cut(s) | 95, 166, 216, 256 |
| LguI | GCTCTTC | 1 cut(s) | 138 |
| Lsp1109I | GCAGC | 4 cut(s) | 155, 167, 446, 479 |
| MabI | ACCWGGT | 1 cut(s) | 689 |
| MaeI | CTAG | 5 cut(s) | 50, 128, 531, 702, 935 |
| MaeII | ACGT | 2 cut(s) | 316, 645 |
| MaeIII | GTNAC | 3 cut(s) | 19, 266, 431 |
| MalI | GATC | 4 cut(s) | 97, 168, 218, 258 |
| MboI | GATC | 4 cut(s) | 95, 166, 216, 256 |
| MboII | GAAGA | 4 cut(s) | 125, 687, 690, 817 |
| MflI | RGATCY | 2 cut(s) | 95, 216 |
| MhlI | GDGCHC | 3 cut(s) | 628, 682, 765 |
| MluCI | AATT | 4 cut(s) | 385, 438, 581, 666 |
| MmeI | TCCRAC | 1 cut(s) | 869 |
| MseI | TTAA | 1 cut(s) | 183 |
| MslI | CAYNNNNRTG | 1 cut(s) | 450 |
| MspA1I | CMGCKG | 1 cut(s) | 470 |
| MspI | CCGG | 2 cut(s) | 521, 884 |
| MspR9I | CCNGG | 2 cut(s) | 587, 691 |
| MvaI | CCWGG | 2 cut(s) | 587, 691 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 32, 152, 344, 880 |
| NcoI | CCATGG | 1 cut(s) | 488 |
| NdeII | GATC | 4 cut(s) | 95, 166, 216, 256 |
| NlaIII | CATG | 5 cut(s) | 449, 492, 503, 852, 862 |
| NlaIV | GGNNCC | 3 cut(s) | 729, 745, 951 |
| NmuCI | GTSAC | 3 cut(s) | 19, 266, 431 |
| NspI | RCATGY | 2 cut(s) | 852, 862 |
| PciI | ACATGT | 1 cut(s) | 848 |
| PciSI | GCTCTTC | 1 cut(s) | 138 |
| PfeI | GAWTC | 1 cut(s) | 561 |
| PkrI | GCNGC | 4 cut(s) | 145, 157, 461, 469 |
| PscI | ACATGT | 1 cut(s) | 848 |
| PsiI | TTATAA | 1 cut(s) | 839 |
| Psp124BI | GAGCTC | 1 cut(s) | 628 |
| Psp6I | CCWGG | 2 cut(s) | 585, 689 |
| PspFI | CCCAGC | 1 cut(s) | 347 |
| PspGI | CCWGG | 2 cut(s) | 585, 689 |
| PspN4I | GGNNCC | 3 cut(s) | 729, 745, 951 |
| PspPI | GGNCC | 3 cut(s) | 46, 589, 744 |
| PstI | CTGCAG | 3 cut(s) | 157, 469, 560 |
| PsuI | RGATCY | 2 cut(s) | 95, 216 |
| PvuII | CAGCTG | 1 cut(s) | 470 |
| RsaI | GTAC | 3 cut(s) | 315, 794, 819 |
| RsaNI | GTAC | 3 cut(s) | 314, 793, 818 |
| RseI | CAYNNNNRTG | 1 cut(s) | 450 |
| SacI | GAGCTC | 1 cut(s) | 628 |
| SapI | GCTCTTC | 1 cut(s) | 138 |
| SaqAI | TTAA | 1 cut(s) | 183 |
| SatI | GCNGC | 4 cut(s) | 144, 156, 460, 468 |
| Sau3AI | GATC | 4 cut(s) | 95, 166, 216, 256 |
| Sau96I | GGNCC | 3 cut(s) | 46, 589, 744 |
| ScaI | AGTACT | 1 cut(s) | 794 |
| ScrFI | CCNGG | 2 cut(s) | 587, 691 |
| SduI | GDGCHC | 3 cut(s) | 628, 682, 765 |
| SexAI | ACCWGGT | 1 cut(s) | 689 |
| SfcI | CTRYAG | 3 cut(s) | 153, 465, 556 |
| SinI | GGWCC | 1 cut(s) | 744 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 450 |
| Sse9I | AATT | 4 cut(s) | 385, 438, 581, 666 |
| SsiI | CCGC | 3 cut(s) | 93, 238, 504 |
| SspMI | CTAG | 5 cut(s) | 50, 128, 531, 702, 935 |
| SstI | GAGCTC | 1 cut(s) | 628 |
| StyD4I | CCNGG | 2 cut(s) | 585, 689 |
| StyI | CCWWGG | 3 cut(s) | 42, 488, 955 |
| TaiI | ACGT | 2 cut(s) | 319, 648 |
| TaqI | TCGA | 4 cut(s) | 5, 12, 106, 495 |
| TaqII | GACCGA | 1 cut(s) | 395 |
| TasI | AATT | 4 cut(s) | 385, 438, 581, 666 |
| TatI | WGTACW | 1 cut(s) | 792 |
| TfiI | GAWTC | 1 cut(s) | 561 |
| Tru1I | TTAA | 1 cut(s) | 183 |
| Tru9I | TTAA | 1 cut(s) | 183 |
| TscAI | CASTG | 2 cut(s) | 28, 489 |
| TseFI | GTSAC | 3 cut(s) | 19, 266, 431 |
| TseI | GCWGC | 4 cut(s) | 143, 155, 459, 467 |
| Tsp45I | GTSAC | 3 cut(s) | 19, 266, 431 |
| TspGWI | ACGGA | 2 cut(s) | 305, 736 |
| TspRI | CASTG | 2 cut(s) | 28, 489 |
| VpaK11BI | GGWCC | 1 cut(s) | 744 |
| XapI | RAATTY | 1 cut(s) | 581 |
| XceI | RCATGY | 2 cut(s) | 852, 862 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 962 |
| XspI | CTAG | 5 cut(s) | 50, 128, 531, 702, 935 |
| ZrmI | AGTACT | 1 cut(s) | 794 |