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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 2 cut(s) | 61, 460 |
| AccB1I | GGYRCC | 3 cut(s) | 61, 460, 682 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 25, 515 |
| AclWI | GGATC | 1 cut(s) | 342 |
| AcsI | RAATTY | 1 cut(s) | 274 |
| AfaI | GTAC | 5 cut(s) | 63, 291, 462, 570, 808 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 25, 515 |
| AgeI | ACCGGT | 1 cut(s) | 400 |
| AgsI | TTSAA | 1 cut(s) | 182 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 782, 814 |
| AluBI | AGCT | 8 cut(s) | 47, 68, 103, 131, 149, 324, 581, 793 |
| AluI | AGCT | 8 cut(s) | 47, 68, 103, 131, 149, 324, 581, 793 |
| Alw21I | GWGCWC | 1 cut(s) | 78 |
| Alw26I | GTCTC | 1 cut(s) | 534 |
| AlwI | GGATC | 1 cut(s) | 342 |
| AoxI | GGCC | 2 cut(s) | 724, 761 |
| ApeKI | GCWGC | 3 cut(s) | 44, 695, 709 |
| ApoI | RAATTY | 1 cut(s) | 274 |
| AsiGI | ACCGGT | 1 cut(s) | 400 |
| Asp718I | GGTACC | 2 cut(s) | 61, 460 |
| AspLEI | GCGC | 2 cut(s) | 31, 175 |
| AspS9I | GGNCC | 1 cut(s) | 905 |
| AsuC2I | CCSGG | 1 cut(s) | 728 |
| AsuHPI | GGTGA | 3 cut(s) | 403, 506, 868 |
| AsuNHI | GCTAGC | 1 cut(s) | 131 |
| AvaII | GGWCC | 1 cut(s) | 905 |
| BaeGI | GKGCMC | 1 cut(s) | 687 |
| BanI | GGYRCC | 3 cut(s) | 61, 460, 682 |
| BanII | GRGCYC | 1 cut(s) | 18 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 751, 783 |
| Bbv12I | GWGCWC | 1 cut(s) | 78 |
| BbvI | GCAGC | 3 cut(s) | 56, 707, 721 |
| BccI | CCATC | 4 cut(s) | 509, 517, 569, 725 |
| BceAI | ACGGC | 1 cut(s) | 643 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 525, 559 |
| BcnI | CCSGG | 1 cut(s) | 728 |
| BcoDI | GTCTC | 1 cut(s) | 534 |
| BfaI | CTAG | 2 cut(s) | 132, 342 |
| BfoI | RGCGCY | 2 cut(s) | 32, 176 |
| BisI | GCNGC | 3 cut(s) | 45, 696, 710 |
| BlsI | GCNGC | 3 cut(s) | 46, 697, 711 |
| BmcAI | AGTACT | 2 cut(s) | 570, 808 |
| Bme1390I | CCNGG | 1 cut(s) | 728 |
| Bme18I | GGWCC | 1 cut(s) | 905 |
| BmgT120I | GGNCC | 1 cut(s) | 905 |
| BmiI | GGNNCC | 5 cut(s) | 17, 63, 462, 684, 906 |
| BmrFI | CCNGG | 1 cut(s) | 728 |
| BmrI | ACTGGG | 1 cut(s) | 816 |
| BmsI | GCATC | 2 cut(s) | 696, 852 |
| BmtI | GCTAGC | 1 cut(s) | 135 |
| BmuI | ACTGGG | 1 cut(s) | 816 |
| BpmI | CTGGAG | 1 cut(s) | 33 |
| BpuEI | CTTGAG | 2 cut(s) | 125, 726 |
| BpuMI | CCSGG | 1 cut(s) | 728 |
| BsaJI | CCNNGG | 3 cut(s) | 24, 828, 900 |
| BsaWI | WCCGGW | 1 cut(s) | 400 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 162, 192, 766, 796 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 25, 515 |
| Bse118I | RCCGGY | 2 cut(s) | 175, 400 |
| Bse1I | ACTGG | 2 cut(s) | 576, 822 |
| BseDI | CCNNGG | 3 cut(s) | 24, 828, 900 |
| BseGI | GGATG | 4 cut(s) | 138, 385, 580, 736 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 25, 515 |
| BseMII | CTCAG | 2 cut(s) | 477, 606 |
| BseNI | ACTGG | 2 cut(s) | 576, 822 |
| BseRI | GAGGAG | 1 cut(s) | 848 |
| BseSI | GKGCMC | 1 cut(s) | 687 |
| BseXI | GCAGC | 3 cut(s) | 56, 707, 721 |
| BshFI | GGCC | 2 cut(s) | 726, 763 |
| BshNI | GGYRCC | 3 cut(s) | 61, 460, 682 |
| BshTI | ACCGGT | 1 cut(s) | 400 |
| BsiHKAI | GWGCWC | 1 cut(s) | 78 |
| BsiSI | CCGG | 3 cut(s) | 176, 401, 727 |
| BslFI | GGGAC | 3 cut(s) | 334, 688, 810 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 25, 515 |
| BsmAI | GTCTC | 1 cut(s) | 534 |
| BsmFI | GGGAC | 3 cut(s) | 334, 688, 810 |
| BsmI | GAATGC | 1 cut(s) | 98 |
| BsnI | GGCC | 2 cut(s) | 726, 763 |
| Bsp1286I | GDGCHC | 3 cut(s) | 18, 78, 687 |
| Bsp143I | GATC | 1 cut(s) | 334 |
| Bsp19I | CCATGG | 1 cut(s) | 828 |
| BspANI | GGCC | 2 cut(s) | 726, 763 |
| BspCNI | CTCAG | 2 cut(s) | 478, 607 |
| BspLI | GGNNCC | 5 cut(s) | 17, 63, 462, 684, 906 |
| BspOI | GCTAGC | 1 cut(s) | 135 |
| BspPI | GGATC | 1 cut(s) | 342 |
| BspT107I | GGYRCC | 3 cut(s) | 61, 460, 682 |
| BsrFI | RCCGGY | 2 cut(s) | 175, 400 |
| BsrI | ACTGG | 2 cut(s) | 576, 822 |
| BssAI | RCCGGY | 2 cut(s) | 175, 400 |
| BssECI | CCNNGG | 3 cut(s) | 24, 828, 900 |
| BssMI | GATC | 1 cut(s) | 334 |
| BssT1I | CCWWGG | 3 cut(s) | 24, 828, 900 |
| Bst4CI | ACNGT | 6 cut(s) | 229, 289, 679, 778, 811, 909 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 41 |
| BstC8I | GCNNGC | 4 cut(s) | 33, 133, 534, 714 |
| BstDEI | CTNAG | 2 cut(s) | 486, 615 |
| BstDSI | CCRYGG | 1 cut(s) | 828 |
| BstF5I | GGATG | 4 cut(s) | 138, 385, 580, 736 |
| BstH2I | RGCGCY | 2 cut(s) | 32, 176 |
| BstHHI | GCGC | 2 cut(s) | 31, 175 |
| BstKTI | GATC | 1 cut(s) | 337 |
| BstMAI | GTCTC | 1 cut(s) | 534 |
| BstMBI | GATC | 1 cut(s) | 334 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 41 |
| BstSCI | CCNGG | 1 cut(s) | 726 |
| BstSLI | GKGCMC | 1 cut(s) | 687 |
| BstV1I | GCAGC | 3 cut(s) | 56, 707, 721 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 197, 829 |
| BsuRI | GGCC | 2 cut(s) | 726, 763 |
| BtgI | CCRYGG | 1 cut(s) | 828 |
| BtsCI | GGATG | 4 cut(s) | 138, 385, 580, 736 |
| BtsI | GCAGTG | 3 cut(s) | 42, 654, 888 |
| BtsIMutI | CAGTG | 3 cut(s) | 42, 654, 888 |
| Cac8I | GCNNGC | 4 cut(s) | 33, 133, 534, 714 |
| CfoI | GCGC | 2 cut(s) | 31, 175 |
| Cfr10I | RCCGGY | 2 cut(s) | 175, 400 |
| Cfr13I | GGNCC | 1 cut(s) | 905 |
| Csp6I | GTAC | 5 cut(s) | 62, 290, 461, 569, 807 |
| CspAI | ACCGGT | 1 cut(s) | 400 |
| CviAII | CATG | 4 cut(s) | 191, 208, 311, 829 |
| CviQI | GTAC | 5 cut(s) | 62, 290, 461, 569, 807 |
| DdeI | CTNAG | 2 cut(s) | 486, 615 |
| DpnI | GATC | 1 cut(s) | 336 |
| DpnII | GATC | 1 cut(s) | 334 |
| Eco130I | CCWWGG | 3 cut(s) | 24, 828, 900 |
| Eco147I | AGGCCT | 1 cut(s) | 763 |
| Eco24I | GRGCYC | 1 cut(s) | 18 |
| Eco32I | GATATC | 1 cut(s) | 841 |
| Eco47I | GGWCC | 1 cut(s) | 905 |
| EcoRV | GATATC | 1 cut(s) | 841 |
| EcoT14I | CCWWGG | 3 cut(s) | 24, 828, 900 |
| EcoT22I | ATGCAT | 2 cut(s) | 98, 209 |
| EcoT38I | GRGCYC | 1 cut(s) | 18 |
| ErhI | CCWWGG | 3 cut(s) | 24, 828, 900 |
| FaeI | CATG | 4 cut(s) | 194, 211, 314, 832 |
| FaiI | YATR | 8 cut(s) | 98, 167, 192, 209, 312, 521, 651, 830 |
| FaqI | GGGAC | 3 cut(s) | 334, 688, 810 |
| FatI | CATG | 4 cut(s) | 190, 207, 310, 828 |
| Fnu4HI | GCNGC | 3 cut(s) | 45, 696, 710 |
| FokI | GGATG | 4 cut(s) | 125, 392, 587, 743 |
| FriOI | GRGCYC | 1 cut(s) | 18 |
| Fsp4HI | GCNGC | 3 cut(s) | 45, 696, 710 |
| FspBI | CTAG | 2 cut(s) | 132, 342 |
| GlaI | GCGC | 2 cut(s) | 30, 174 |
| GluI | GCNGC | 3 cut(s) | 45, 696, 710 |
| GsuI | CTGGAG | 1 cut(s) | 33 |
| HaeII | RGCGCY | 2 cut(s) | 32, 176 |
| HaeIII | GGCC | 2 cut(s) | 726, 763 |
| HapII | CCGG | 3 cut(s) | 176, 401, 727 |
| HhaI | GCGC | 2 cut(s) | 31, 175 |
| Hin1II | CATG | 4 cut(s) | 194, 211, 314, 832 |
| Hin6I | GCGC | 2 cut(s) | 29, 173 |
| HinP1I | GCGC | 2 cut(s) | 29, 173 |
| HindIII | AAGCTT | 1 cut(s) | 147 |
| HinfI | GANTC | 2 cut(s) | 482, 542 |
| HpaII | CCGG | 3 cut(s) | 176, 401, 727 |
| HphI | GGTGA | 3 cut(s) | 403, 506, 868 |
| Hpy166II | GTNNAC | 5 cut(s) | 362, 449, 592, 876, 888 |
| Hpy188I | TCNGA | 2 cut(s) | 487, 514 |
| Hpy188III | TCNNGA | 3 cut(s) | 50, 142, 283 |
| Hpy8I | GTNNAC | 5 cut(s) | 362, 449, 592, 876, 888 |
| HpyAV | CCTTC | 4 cut(s) | 5, 231, 716, 777 |
| HpyCH4III | ACNGT | 6 cut(s) | 229, 289, 679, 778, 811, 909 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 41 |
| HpyF3I | CTNAG | 2 cut(s) | 486, 615 |
| Hsp92II | CATG | 4 cut(s) | 194, 211, 314, 832 |
| HspAI | GCGC | 2 cut(s) | 29, 173 |
| KpnI | GGTACC | 2 cut(s) | 65, 464 |
| Kzo9I | GATC | 1 cut(s) | 334 |
| LmnI | GCTCC | 5 cut(s) | 21, 52, 88, 170, 578 |
| Lsp1109I | GCAGC | 3 cut(s) | 56, 707, 721 |
| LweI | GCATC | 2 cut(s) | 696, 852 |
| MaeI | CTAG | 2 cut(s) | 132, 342 |
| MaeIII | GTNAC | 2 cut(s) | 610, 619 |
| MalI | GATC | 1 cut(s) | 336 |
| MboI | GATC | 1 cut(s) | 334 |
| MboII | GAAGA | 2 cut(s) | 194, 871 |
| MhlI | GDGCHC | 3 cut(s) | 18, 78, 687 |
| MluCI | AATT | 4 cut(s) | 113, 274, 603, 797 |
| MlyI | GAGTC | 2 cut(s) | 491, 536 |
| MmeI | TCCRAC | 1 cut(s) | 43 |
| MnlI | CCTC | 7 cut(s) | 52, 228, 362, 610, 774, 826, 829 |
| Mph1103I | ATGCAT | 2 cut(s) | 98, 209 |
| MseI | TTAA | 5 cut(s) | 327, 375, 849, 870, 882 |
| MslI | CAYNNNNRTG | 1 cut(s) | 195 |
| MspA1I | CMGCKG | 1 cut(s) | 68 |
| MspI | CCGG | 3 cut(s) | 176, 401, 727 |
| MspR9I | CCNGG | 1 cut(s) | 728 |
| Mva1269I | GAATGC | 1 cut(s) | 98 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 41 |
| NciI | CCSGG | 1 cut(s) | 728 |
| NcoI | CCATGG | 1 cut(s) | 828 |
| NdeII | GATC | 1 cut(s) | 334 |
| NheI | GCTAGC | 1 cut(s) | 131 |
| NlaIII | CATG | 4 cut(s) | 194, 211, 314, 832 |
| NlaIV | GGNNCC | 5 cut(s) | 17, 63, 462, 684, 906 |
| NmuCI | GTSAC | 1 cut(s) | 610 |
| NsiI | ATGCAT | 2 cut(s) | 98, 209 |
| PceI | AGGCCT | 1 cut(s) | 763 |
| PctI | GAATGC | 1 cut(s) | 98 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 25, 515 |
| PinAI | ACCGGT | 1 cut(s) | 400 |
| PkrI | GCNGC | 3 cut(s) | 46, 697, 711 |
| PleI | GAGTC | 2 cut(s) | 490, 536 |
| PpsI | GAGTC | 2 cut(s) | 490, 536 |
| PspN4I | GGNNCC | 5 cut(s) | 17, 63, 462, 684, 906 |
| PspPI | GGNCC | 1 cut(s) | 905 |
| PvuII | CAGCTG | 1 cut(s) | 68 |
| RsaI | GTAC | 5 cut(s) | 63, 291, 462, 570, 808 |
| RsaNI | GTAC | 5 cut(s) | 62, 290, 461, 569, 807 |
| RseI | CAYNNNNRTG | 1 cut(s) | 195 |
| SaqAI | TTAA | 5 cut(s) | 327, 375, 849, 870, 882 |
| SatI | GCNGC | 3 cut(s) | 45, 696, 710 |
| Sau3AI | GATC | 1 cut(s) | 334 |
| Sau96I | GGNCC | 1 cut(s) | 905 |
| ScaI | AGTACT | 2 cut(s) | 570, 808 |
| SchI | GAGTC | 2 cut(s) | 491, 536 |
| ScrFI | CCNGG | 1 cut(s) | 728 |
| SduI | GDGCHC | 3 cut(s) | 18, 78, 687 |
| SfaNI | GCATC | 2 cut(s) | 696, 852 |
| SinI | GGWCC | 1 cut(s) | 905 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 195 |
| SmlI | CTYRAG | 2 cut(s) | 104, 741 |
| SmoI | CTYRAG | 2 cut(s) | 104, 741 |
| Sse9I | AATT | 4 cut(s) | 113, 274, 603, 797 |
| SseBI | AGGCCT | 1 cut(s) | 763 |
| SspI | AATATT | 1 cut(s) | 478 |
| SspMI | CTAG | 2 cut(s) | 132, 342 |
| StuI | AGGCCT | 1 cut(s) | 763 |
| StyD4I | CCNGG | 1 cut(s) | 726 |
| StyI | CCWWGG | 3 cut(s) | 24, 828, 900 |
| TaaI | ACNGT | 6 cut(s) | 229, 289, 679, 778, 811, 909 |
| TaqI | TCGA | 1 cut(s) | 224 |
| TasI | AATT | 4 cut(s) | 113, 274, 603, 797 |
| TatI | WGTACW | 3 cut(s) | 289, 568, 806 |
| Tru1I | TTAA | 5 cut(s) | 327, 375, 849, 870, 882 |
| Tru9I | TTAA | 5 cut(s) | 327, 375, 849, 870, 882 |
| TscAI | CASTG | 3 cut(s) | 42, 661, 895 |
| TseFI | GTSAC | 1 cut(s) | 610 |
| TseI | GCWGC | 3 cut(s) | 44, 695, 709 |
| Tsp45I | GTSAC | 1 cut(s) | 610 |
| TspDTI | ATGAA | 2 cut(s) | 267, 872 |
| TspRI | CASTG | 3 cut(s) | 42, 661, 895 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 25, 515 |
| VpaK11BI | GGWCC | 1 cut(s) | 905 |
| XapI | RAATTY | 1 cut(s) | 274 |
| XspI | CTAG | 2 cut(s) | 132, 342 |
| ZrmI | AGTACT | 2 cut(s) | 570, 808 |
| Zsp2I | ATGCAT | 2 cut(s) | 98, 209 |