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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 63 |
| AatII | GACGTC | 1 cut(s) | 1066 |
| Acc36I | ACCTGC | 2 cut(s) | 307, 1147 |
| Acc65I | GGTACC | 1 cut(s) | 309 |
| AccB1I | GGYRCC | 1 cut(s) | 309 |
| AccBSI | CCGCTC | 1 cut(s) | 90 |
| AciI | CCGC | 3 cut(s) | 90, 169, 221 |
| AclWI | GGATC | 3 cut(s) | 165, 479, 773 |
| AcsI | RAATTY | 4 cut(s) | 142, 361, 632, 1081 |
| AcuI | CTGAAG | 3 cut(s) | 765, 917, 1059 |
| AcyI | GRCGYC | 1 cut(s) | 1063 |
| AfaI | GTAC | 3 cut(s) | 311, 321, 993 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 188, 643 |
| AgsI | TTSAA | 5 cut(s) | 147, 329, 554, 631, 1228 |
| AjnI | CCWGG | 3 cut(s) | 385, 636, 1107 |
| Alw26I | GTCTC | 1 cut(s) | 872 |
| AlwI | GGATC | 3 cut(s) | 165, 479, 773 |
| AoxI | GGCC | 1 cut(s) | 997 |
| ApeKI | GCWGC | 2 cut(s) | 122, 1034 |
| ApoI | RAATTY | 4 cut(s) | 142, 361, 632, 1081 |
| Asp718I | GGTACC | 1 cut(s) | 309 |
| AspLEI | GCGC | 2 cut(s) | 711, 852 |
| AspS9I | GGNCC | 3 cut(s) | 299, 1114, 1250 |
| AsuHPI | GGTGA | 4 cut(s) | 100, 158, 651, 864 |
| AsuII | TTCGAA | 1 cut(s) | 1085 |
| AvaII | GGWCC | 3 cut(s) | 299, 1114, 1250 |
| BaeGI | GKGCMC | 1 cut(s) | 1149 |
| BanI | GGYRCC | 1 cut(s) | 309 |
| BbvCI | CCTCAGC | 1 cut(s) | 528 |
| BbvI | GCAGC | 2 cut(s) | 109, 1046 |
| BccI | CCATC | 1 cut(s) | 241 |
| BciT130I | CCWGG | 3 cut(s) | 387, 638, 1109 |
| BclI | TGATCA | 2 cut(s) | 682, 784 |
| BcoDI | GTCTC | 1 cut(s) | 872 |
| BfaI | CTAG | 3 cut(s) | 758, 1158, 1290 |
| BfmI | CTRYAG | 1 cut(s) | 1140 |
| BfoI | RGCGCY | 1 cut(s) | 712 |
| BfuAI | ACCTGC | 2 cut(s) | 307, 1147 |
| BglII | AGATCT | 2 cut(s) | 863, 1009 |
| BisI | GCNGC | 3 cut(s) | 123, 221, 1035 |
| BlsI | GCNGC | 3 cut(s) | 124, 222, 1036 |
| Bme1390I | CCNGG | 3 cut(s) | 387, 638, 1109 |
| Bme18I | GGWCC | 3 cut(s) | 299, 1114, 1250 |
| BmgT120I | GGNCC | 3 cut(s) | 299, 1114, 1250 |
| BmiI | GGNNCC | 2 cut(s) | 311, 1075 |
| BmrFI | CCNGG | 3 cut(s) | 387, 638, 1109 |
| BmrI | ACTGGG | 1 cut(s) | 22 |
| BmsI | GCATC | 8 cut(s) | 43, 180, 514, 611, 690, 742, 815, 817 |
| BmuI | ACTGGG | 1 cut(s) | 22 |
| Bpu10I | CCTNAGC | 3 cut(s) | 528, 987, 1151 |
| Bpu14I | TTCGAA | 1 cut(s) | 1085 |
| BpuEI | CTTGAG | 2 cut(s) | 239, 842 |
| BsaAI | YACGTR | 1 cut(s) | 323 |
| BsaBI | GATNNNNATC | 2 cut(s) | 783, 868 |
| BsaHI | GRCGYC | 1 cut(s) | 1063 |
| BsaI | GGTCTC | 1 cut(s) | 872 |
| BsaJI | CCNNGG | 5 cut(s) | 129, 292, 302, 637, 672 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 188, 643 |
| Bse1I | ACTGG | 2 cut(s) | 22, 28 |
| Bse8I | GATNNNNATC | 2 cut(s) | 783, 868 |
| BseBI | CCWGG | 3 cut(s) | 387, 638, 1109 |
| BseDI | CCNNGG | 5 cut(s) | 129, 292, 302, 637, 672 |
| BseGI | GGATG | 4 cut(s) | 529, 602, 832, 957 |
| BseJI | GATNNNNATC | 2 cut(s) | 783, 868 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 188, 643 |
| BseMII | CTCAG | 3 cut(s) | 348, 519, 867 |
| BseNI | ACTGG | 2 cut(s) | 22, 28 |
| BseRI | GAGGAG | 1 cut(s) | 309 |
| BseSI | GKGCMC | 1 cut(s) | 1149 |
| BseXI | GCAGC | 2 cut(s) | 109, 1046 |
| BsgI | GTGCAG | 1 cut(s) | 1053 |
| BshFI | GGCC | 1 cut(s) | 999 |
| BshNI | GGYRCC | 1 cut(s) | 309 |
| BsiSI | CCGG | 1 cut(s) | 43 |
| BslFI | GGGAC | 2 cut(s) | 287, 1050 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 188, 643 |
| BsmAI | GTCTC | 1 cut(s) | 872 |
| BsmFI | GGGAC | 2 cut(s) | 287, 1050 |
| BsnI | GGCC | 1 cut(s) | 999 |
| Bso31I | GGTCTC | 1 cut(s) | 872 |
| Bsp119I | TTCGAA | 1 cut(s) | 1085 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1149 |
| Bsp143I | GATC | 8 cut(s) | 157, 484, 682, 778, 784, 817, 863, 1009 |
| BspACI | CCGC | 3 cut(s) | 90, 169, 221 |
| BspANI | GGCC | 1 cut(s) | 999 |
| BspCNI | CTCAG | 3 cut(s) | 349, 520, 868 |
| BspHI | TCATGA | 1 cut(s) | 100 |
| BspLI | GGNNCC | 2 cut(s) | 311, 1075 |
| BspMAI | CTGCAG | 1 cut(s) | 1144 |
| BspMI | ACCTGC | 2 cut(s) | 307, 1147 |
| BspPI | GGATC | 3 cut(s) | 165, 479, 773 |
| BspT104I | TTCGAA | 1 cut(s) | 1085 |
| BspT107I | GGYRCC | 1 cut(s) | 309 |
| BspTNI | GGTCTC | 1 cut(s) | 872 |
| BsrBI | CCGCTC | 1 cut(s) | 90 |
| BsrI | ACTGG | 2 cut(s) | 22, 28 |
| BssECI | CCNNGG | 5 cut(s) | 129, 292, 302, 637, 672 |
| BssMI | GATC | 8 cut(s) | 157, 484, 682, 778, 784, 817, 863, 1009 |
| BssNI | GRCGYC | 1 cut(s) | 1063 |
| BssT1I | CCWWGG | 2 cut(s) | 129, 302 |
| Bst2UI | CCWGG | 3 cut(s) | 387, 638, 1109 |
| Bst6I | CTCTTC | 2 cut(s) | 528, 1049 |
| BstACI | GRCGYC | 1 cut(s) | 1063 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 524 |
| BstBAI | YACGTR | 1 cut(s) | 323 |
| BstBI | TTCGAA | 1 cut(s) | 1085 |
| BstDEI | CTNAG | 6 cut(s) | 342, 357, 528, 876, 987, 1151 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 186 |
| BstF5I | GGATG | 4 cut(s) | 529, 602, 832, 957 |
| BstH2I | RGCGCY | 1 cut(s) | 712 |
| BstHHI | GCGC | 2 cut(s) | 711, 852 |
| BstKTI | GATC | 8 cut(s) | 160, 487, 685, 781, 787, 820, 866, 1012 |
| BstMAI | GTCTC | 1 cut(s) | 872 |
| BstMBI | GATC | 8 cut(s) | 157, 484, 682, 778, 784, 817, 863, 1009 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 131, 524, 608, 858, 1040 |
| BstNI | CCWGG | 3 cut(s) | 387, 638, 1109 |
| BstSCI | CCNGG | 3 cut(s) | 385, 636, 1107 |
| BstSFI | CTRYAG | 1 cut(s) | 1140 |
| BstSLI | GKGCMC | 1 cut(s) | 1149 |
| BstSNI | TACGTA | 1 cut(s) | 323 |
| BstV1I | GCAGC | 2 cut(s) | 109, 1046 |
| BstX2I | RGATCY | 3 cut(s) | 157, 863, 1009 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 613 |
| BstYI | RGATCY | 3 cut(s) | 157, 863, 1009 |
| BsuRI | GGCC | 1 cut(s) | 999 |
| BtsCI | GGATG | 4 cut(s) | 529, 602, 832, 957 |
| BtsI | GCAGTG | 1 cut(s) | 1149 |
| BtsIMutI | CAGTG | 3 cut(s) | 15, 35, 1149 |
| BveI | ACCTGC | 2 cut(s) | 307, 1147 |
| CciI | TCATGA | 1 cut(s) | 100 |
| CfoI | GCGC | 2 cut(s) | 711, 852 |
| Cfr13I | GGNCC | 3 cut(s) | 299, 1114, 1250 |
| CseI | GACGC | 2 cut(s) | 114, 366 |
| Csp6I | GTAC | 3 cut(s) | 310, 320, 992 |
| CviAII | CATG | 9 cut(s) | 85, 101, 277, 571, 620, 737, 926, 935, 1254 |
| CviQI | GTAC | 3 cut(s) | 310, 320, 992 |
| DdeI | CTNAG | 6 cut(s) | 342, 357, 528, 876, 987, 1151 |
| DpnI | GATC | 8 cut(s) | 159, 486, 684, 780, 786, 819, 865, 1011 |
| DpnII | GATC | 8 cut(s) | 157, 484, 682, 778, 784, 817, 863, 1009 |
| Eam1104I | CTCTTC | 2 cut(s) | 528, 1049 |
| EarI | CTCTTC | 2 cut(s) | 528, 1049 |
| Eco105I | TACGTA | 1 cut(s) | 323 |
| Eco130I | CCWWGG | 2 cut(s) | 129, 302 |
| Eco31I | GGTCTC | 1 cut(s) | 872 |
| Eco47I | GGWCC | 3 cut(s) | 299, 1114, 1250 |
| Eco57I | CTGAAG | 3 cut(s) | 765, 917, 1059 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 186 |
| EcoO109I | RGGNCCY | 2 cut(s) | 299, 1114 |
| EcoRI | GAATTC | 1 cut(s) | 1081 |
| EcoRII | CCWGG | 3 cut(s) | 385, 636, 1107 |
| EcoT14I | CCWWGG | 2 cut(s) | 129, 302 |
| EcoT22I | ATGCAT | 2 cut(s) | 705, 808 |
| ErhI | CCWWGG | 2 cut(s) | 129, 302 |
| FaeI | CATG | 9 cut(s) | 88, 104, 280, 574, 623, 740, 929, 938, 1257 |
| FaqI | GGGAC | 2 cut(s) | 287, 1050 |
| FatI | CATG | 9 cut(s) | 84, 100, 276, 570, 619, 736, 925, 934, 1253 |
| FbaI | TGATCA | 2 cut(s) | 682, 784 |
| Fnu4HI | GCNGC | 3 cut(s) | 123, 221, 1035 |
| FokI | GGATG | 4 cut(s) | 536, 589, 839, 964 |
| Fsp4HI | GCNGC | 3 cut(s) | 123, 221, 1035 |
| FspBI | CTAG | 3 cut(s) | 758, 1158, 1290 |
| GlaI | GCGC | 2 cut(s) | 710, 851 |
| GluI | GCNGC | 3 cut(s) | 123, 221, 1035 |
| HaeII | RGCGCY | 1 cut(s) | 712 |
| HaeIII | GGCC | 1 cut(s) | 999 |
| HapII | CCGG | 1 cut(s) | 43 |
| HgaI | GACGC | 2 cut(s) | 114, 366 |
| HhaI | GCGC | 2 cut(s) | 711, 852 |
| Hin1I | GRCGYC | 1 cut(s) | 1063 |
| Hin1II | CATG | 9 cut(s) | 88, 104, 280, 574, 623, 740, 929, 938, 1257 |
| Hin6I | GCGC | 2 cut(s) | 709, 850 |
| HinP1I | GCGC | 2 cut(s) | 709, 850 |
| HincII | GTYRAC | 1 cut(s) | 1105 |
| HindII | GTYRAC | 1 cut(s) | 1105 |
| HindIII | AAGCTT | 2 cut(s) | 241, 413 |
| HinfI | GANTC | 4 cut(s) | 4, 1024, 1120, 1132 |
| HpaI | GTTAAC | 1 cut(s) | 1105 |
| HpaII | CCGG | 1 cut(s) | 43 |
| HphI | GGTGA | 4 cut(s) | 100, 158, 651, 864 |
| Hpy166II | GTNNAC | 1 cut(s) | 1105 |
| Hpy188I | TCNGA | 7 cut(s) | 39, 293, 484, 564, 796, 811, 1131 |
| Hpy188III | TCNNGA | 4 cut(s) | 101, 208, 782, 821 |
| Hpy8I | GTNNAC | 1 cut(s) | 1105 |
| HpyAV | CCTTC | 9 cut(s) | 214, 264, 427, 663, 839, 892, 1134, 1159, 1167 |
| HpyCH4IV | ACGT | 3 cut(s) | 322, 814, 1063 |
| HpyCH4V | TGCA | 9 cut(s) | 140, 602, 619, 703, 806, 919, 940, 1034, 1142 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 131, 524, 608, 858, 1040 |
| HpyF3I | CTNAG | 6 cut(s) | 342, 357, 528, 876, 987, 1151 |
| HpySE526I | ACGT | 3 cut(s) | 322, 814, 1063 |
| Hsp92I | GRCGYC | 1 cut(s) | 1063 |
| Hsp92II | CATG | 9 cut(s) | 88, 104, 280, 574, 623, 740, 929, 938, 1257 |
| HspAI | GCGC | 2 cut(s) | 709, 850 |
| KpnI | GGTACC | 1 cut(s) | 313 |
| Ksp22I | TGATCA | 2 cut(s) | 682, 784 |
| KspAI | GTTAAC | 1 cut(s) | 1105 |
| Kzo9I | GATC | 8 cut(s) | 157, 484, 682, 778, 784, 817, 863, 1009 |
| LmnI | GCTCC | 3 cut(s) | 184, 623, 1271 |
| Lsp1109I | GCAGC | 2 cut(s) | 109, 1046 |
| LweI | GCATC | 8 cut(s) | 43, 180, 514, 611, 690, 742, 815, 817 |
| MaeI | CTAG | 3 cut(s) | 758, 1158, 1290 |
| MaeII | ACGT | 3 cut(s) | 322, 814, 1063 |
| MaeIII | GTNAC | 3 cut(s) | 13, 106, 193 |
| MalI | GATC | 8 cut(s) | 159, 486, 684, 780, 786, 819, 865, 1011 |
| MbiI | CCGCTC | 1 cut(s) | 90 |
| MboI | GATC | 8 cut(s) | 157, 484, 682, 778, 784, 817, 863, 1009 |
| MfeI | CAATTG | 3 cut(s) | 663, 1228, 1239 |
| MflI | RGATCY | 3 cut(s) | 157, 863, 1009 |
| MhlI | GDGCHC | 1 cut(s) | 1149 |
| MluCI | AATT | 8 cut(s) | 142, 361, 556, 632, 663, 1081, 1228, 1239 |
| MlyI | GAGTC | 3 cut(s) | 1018, 1114, 1126 |
| MmeI | TCCRAC | 1 cut(s) | 820 |
| Mph1103I | ATGCAT | 2 cut(s) | 705, 808 |
| MseI | TTAA | 2 cut(s) | 495, 1104 |
| MspA1I | CMGCKG | 1 cut(s) | 1037 |
| MspI | CCGG | 1 cut(s) | 43 |
| MspR9I | CCNGG | 3 cut(s) | 387, 638, 1109 |
| MunI | CAATTG | 3 cut(s) | 663, 1228, 1239 |
| MvaI | CCWGG | 3 cut(s) | 387, 638, 1109 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 131, 524, 608, 858, 1040 |
| NdeII | GATC | 8 cut(s) | 157, 484, 682, 778, 784, 817, 863, 1009 |
| NlaIII | CATG | 9 cut(s) | 88, 104, 280, 574, 623, 740, 929, 938, 1257 |
| NlaIV | GGNNCC | 2 cut(s) | 311, 1075 |
| NmuCI | GTSAC | 2 cut(s) | 13, 106 |
| NsiI | ATGCAT | 2 cut(s) | 705, 808 |
| NspV | TTCGAA | 1 cut(s) | 1085 |
| PagI | TCATGA | 1 cut(s) | 100 |
| PfeI | GAWTC | 1 cut(s) | 4 |
| PkrI | GCNGC | 3 cut(s) | 124, 222, 1036 |
| PleI | GAGTC | 3 cut(s) | 1018, 1114, 1126 |
| PpsI | GAGTC | 3 cut(s) | 1018, 1114, 1126 |
| Ppu21I | YACGTR | 1 cut(s) | 323 |
| PpuMI | RGGWCCY | 2 cut(s) | 299, 1114 |
| PsiI | TTATAA | 1 cut(s) | 63 |
| Psp5II | RGGWCCY | 2 cut(s) | 299, 1114 |
| Psp6I | CCWGG | 3 cut(s) | 385, 636, 1107 |
| PspGI | CCWGG | 3 cut(s) | 385, 636, 1107 |
| PspN4I | GGNNCC | 2 cut(s) | 311, 1075 |
| PspPI | GGNCC | 3 cut(s) | 299, 1114, 1250 |
| PspPPI | RGGWCCY | 2 cut(s) | 299, 1114 |
| PstI | CTGCAG | 1 cut(s) | 1144 |
| PsuI | RGATCY | 3 cut(s) | 157, 863, 1009 |
| PvuII | CAGCTG | 1 cut(s) | 1037 |
| RsaI | GTAC | 3 cut(s) | 311, 321, 993 |
| RsaNI | GTAC | 3 cut(s) | 310, 320, 992 |
| SaqAI | TTAA | 2 cut(s) | 495, 1104 |
| SatI | GCNGC | 3 cut(s) | 123, 221, 1035 |
| Sau3AI | GATC | 8 cut(s) | 157, 484, 682, 778, 784, 817, 863, 1009 |
| Sau96I | GGNCC | 3 cut(s) | 299, 1114, 1250 |
| SchI | GAGTC | 3 cut(s) | 1018, 1114, 1126 |
| ScrFI | CCNGG | 3 cut(s) | 387, 638, 1109 |
| SduI | GDGCHC | 1 cut(s) | 1149 |
| SfaNI | GCATC | 8 cut(s) | 43, 180, 514, 611, 690, 742, 815, 817 |
| SfcI | CTRYAG | 1 cut(s) | 1140 |
| SfuI | TTCGAA | 1 cut(s) | 1085 |
| SinI | GGWCC | 3 cut(s) | 299, 1114, 1250 |
| SmlI | CTYRAG | 2 cut(s) | 254, 821 |
| SmoI | CTYRAG | 2 cut(s) | 254, 821 |
| SnaBI | TACGTA | 1 cut(s) | 323 |
| Sse9I | AATT | 8 cut(s) | 142, 361, 556, 632, 663, 1081, 1228, 1239 |
| SsiI | CCGC | 3 cut(s) | 90, 169, 221 |
| SspMI | CTAG | 3 cut(s) | 758, 1158, 1290 |
| StyD4I | CCNGG | 3 cut(s) | 385, 636, 1107 |
| StyI | CCWWGG | 2 cut(s) | 129, 302 |
| TaiI | ACGT | 3 cut(s) | 325, 817, 1066 |
| TaqI | TCGA | 2 cut(s) | 399, 1085 |
| TaqII | GACCGA | 1 cut(s) | 664 |
| TasI | AATT | 8 cut(s) | 142, 361, 556, 632, 663, 1081, 1228, 1239 |
| TauI | GCSGC | 1 cut(s) | 223 |
| TfiI | GAWTC | 1 cut(s) | 4 |
| Tru1I | TTAA | 2 cut(s) | 495, 1104 |
| Tru9I | TTAA | 2 cut(s) | 495, 1104 |
| TscAI | CASTG | 3 cut(s) | 22, 35, 1149 |
| TseFI | GTSAC | 2 cut(s) | 13, 106 |
| TseI | GCWGC | 2 cut(s) | 122, 1034 |
| Tsp45I | GTSAC | 2 cut(s) | 13, 106 |
| TspDTI | ATGAA | 8 cut(s) | 17, 89, 293, 363, 753, 858, 942, 968 |
| TspGWI | ACGGA | 1 cut(s) | 536 |
| TspRI | CASTG | 3 cut(s) | 22, 35, 1149 |
| VpaK11BI | GGWCC | 3 cut(s) | 299, 1114, 1250 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 186 |
| XapI | RAATTY | 4 cut(s) | 142, 361, 632, 1081 |
| XspI | CTAG | 3 cut(s) | 758, 1158, 1290 |
| ZraI | GACGTC | 1 cut(s) | 1064 |
| Zsp2I | ATGCAT | 2 cut(s) | 705, 808 |