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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 28 |
| AciI | CCGC | 6 cut(s) | 310, 684, 808, 855, 891, 944 |
| AclWI | GGATC | 3 cut(s) | 99, 426, 826 |
| AcuI | CTGAAG | 1 cut(s) | 664 |
| AcyI | GRCGYC | 1 cut(s) | 5 |
| AfaI | GTAC | 6 cut(s) | 59, 130, 233, 330, 485, 700 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 78, 309, 431, 731, 732, 751, 933, 946 |
| AflIII | ACRYGT | 2 cut(s) | 228, 234 |
| AjnI | CCWGG | 3 cut(s) | 424, 627, 756 |
| AluBI | AGCT | 6 cut(s) | 258, 338, 503, 611, 678, 1032 |
| AluI | AGCT | 6 cut(s) | 258, 338, 503, 611, 678, 1032 |
| Alw21I | GWGCWC | 1 cut(s) | 804 |
| AlwI | GGATC | 3 cut(s) | 99, 426, 826 |
| Ama87I | CYCGRG | 2 cut(s) | 932, 1027 |
| AoxI | GGCC | 5 cut(s) | 205, 375, 510, 722, 918 |
| ApeKI | GCWGC | 5 cut(s) | 335, 814, 817, 820, 888 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 773, 805 |
| AspA2I | CCTAGG | 1 cut(s) | 404 |
| AspLEI | GCGC | 1 cut(s) | 979 |
| AspS9I | GGNCC | 7 cut(s) | 205, 625, 723, 741, 754, 918, 937 |
| AsuC2I | CCSGG | 2 cut(s) | 933, 934 |
| AsuHPI | GGTGA | 5 cut(s) | 65, 579, 674, 724, 996 |
| AsuNHI | GCTAGC | 1 cut(s) | 488 |
| AvaI | CYCGRG | 2 cut(s) | 932, 1027 |
| AvaII | GGWCC | 4 cut(s) | 625, 741, 754, 937 |
| AvrII | CCTAGG | 1 cut(s) | 404 |
| AxyI | CCTNAGG | 1 cut(s) | 26 |
| Bbv12I | GWGCWC | 1 cut(s) | 804 |
| BbvCI | CCTCAGC | 1 cut(s) | 410 |
| BbvI | GCAGC | 5 cut(s) | 347, 801, 829, 832, 900 |
| BccI | CCATC | 5 cut(s) | 164, 197, 257, 700, 948 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 766, 800 |
| BciT130I | CCWGG | 3 cut(s) | 426, 629, 758 |
| BclI | TGATCA | 2 cut(s) | 85, 664 |
| BcnI | CCSGG | 2 cut(s) | 933, 934 |
| BfaI | CTAG | 3 cut(s) | 114, 405, 489 |
| BfmI | CTRYAG | 3 cut(s) | 145, 526, 815 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 917 |
| BisI | GCNGC | 6 cut(s) | 311, 336, 815, 818, 821, 889 |
| BlnI | CCTAGG | 1 cut(s) | 404 |
| BlsI | GCNGC | 6 cut(s) | 312, 337, 816, 819, 822, 890 |
| Bme1390I | CCNGG | 5 cut(s) | 426, 629, 758, 933, 934 |
| Bme18I | GGWCC | 4 cut(s) | 625, 741, 754, 937 |
| BmeT110I | CYCGRG | 2 cut(s) | 932, 1027 |
| BmgT120I | GGNCC | 7 cut(s) | 205, 625, 723, 741, 754, 918, 937 |
| BmiI | GGNNCC | 3 cut(s) | 372, 743, 938 |
| BmrFI | CCNGG | 5 cut(s) | 426, 629, 758, 933, 934 |
| BmrI | ACTGGG | 1 cut(s) | 925 |
| BmsI | GCATC | 3 cut(s) | 466, 1004, 1010 |
| BmtI | GCTAGC | 1 cut(s) | 492 |
| BmuI | ACTGGG | 1 cut(s) | 925 |
| BpmI | CTGGAG | 2 cut(s) | 650, 779 |
| Bpu10I | CCTNAGC | 1 cut(s) | 410 |
| BpuEI | CTTGAG | 2 cut(s) | 535, 950 |
| BpuMI | CCSGG | 2 cut(s) | 933, 934 |
| BsaBI | GATNNNNATC | 1 cut(s) | 90 |
| BsaHI | GRCGYC | 1 cut(s) | 5 |
| BsaJI | CCNNGG | 5 cut(s) | 404, 604, 784, 932, 933 |
| BsaWI | WCCGGW | 1 cut(s) | 622 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 532, 562 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 78, 309, 431, 731, 732, 751, 933, 946 |
| Bse118I | RCCGGY | 1 cut(s) | 373 |
| Bse1I | ACTGG | 2 cut(s) | 920, 927 |
| Bse21I | CCTNAGG | 1 cut(s) | 26 |
| Bse3DI | GCAATG | 1 cut(s) | 184 |
| Bse8I | GATNNNNATC | 1 cut(s) | 90 |
| BseBI | CCWGG | 3 cut(s) | 426, 629, 758 |
| BseDI | CCNNGG | 5 cut(s) | 404, 604, 784, 932, 933 |
| BseGI | GGATG | 7 cut(s) | 280, 296, 348, 358, 457, 711, 940 |
| BseJI | GATNNNNATC | 1 cut(s) | 90 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 78, 309, 431, 731, 732, 751, 933, 946 |
| BseMI | GCAATG | 1 cut(s) | 184 |
| BseMII | CTCAG | 4 cut(s) | 40, 328, 401, 518 |
| BseNI | ACTGG | 2 cut(s) | 920, 927 |
| BseRI | GAGGAG | 5 cut(s) | 427, 547, 556, 559, 568 |
| BseXI | GCAGC | 5 cut(s) | 347, 801, 829, 832, 900 |
| BseYI | CCCAGC | 2 cut(s) | 338, 431 |
| Bsh1285I | CGRYCG | 1 cut(s) | 808 |
| BshFI | GGCC | 5 cut(s) | 207, 377, 512, 724, 920 |
| BsiEI | CGRYCG | 1 cut(s) | 808 |
| BsiHKAI | GWGCWC | 1 cut(s) | 804 |
| BsiHKCI | CYCGRG | 2 cut(s) | 932, 1027 |
| BsiSI | CCGG | 4 cut(s) | 374, 392, 623, 933 |
| BslFI | GGGAC | 4 cut(s) | 281, 727, 915, 950 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 78, 309, 431, 731, 732, 751, 933, 946 |
| BsmFI | GGGAC | 4 cut(s) | 281, 727, 915, 950 |
| BsnI | GGCC | 5 cut(s) | 207, 377, 512, 724, 920 |
| BsoBI | CYCGRG | 2 cut(s) | 932, 1027 |
| Bsp1286I | GDGCHC | 1 cut(s) | 804 |
| Bsp1407I | TGTACA | 1 cut(s) | 231 |
| Bsp143I | GATC | 6 cut(s) | 85, 91, 418, 572, 664, 831 |
| BspACI | CCGC | 6 cut(s) | 310, 684, 808, 855, 891, 944 |
| BspANI | GGCC | 5 cut(s) | 207, 377, 512, 724, 920 |
| BspCNI | CTCAG | 4 cut(s) | 39, 327, 402, 517 |
| BspLI | GGNNCC | 3 cut(s) | 372, 743, 938 |
| BspMAI | CTGCAG | 2 cut(s) | 530, 819 |
| BspOI | GCTAGC | 1 cut(s) | 492 |
| BspPI | GGATC | 3 cut(s) | 99, 426, 826 |
| BsrDI | GCAATG | 1 cut(s) | 184 |
| BsrFI | RCCGGY | 1 cut(s) | 373 |
| BsrGI | TGTACA | 1 cut(s) | 231 |
| BsrI | ACTGG | 2 cut(s) | 920, 927 |
| BssAI | RCCGGY | 1 cut(s) | 373 |
| BssECI | CCNNGG | 5 cut(s) | 404, 604, 784, 932, 933 |
| BssMI | GATC | 6 cut(s) | 85, 91, 418, 572, 664, 831 |
| BssNI | GRCGYC | 1 cut(s) | 5 |
| BssT1I | CCWWGG | 1 cut(s) | 404 |
| Bst2UI | CCWGG | 3 cut(s) | 426, 629, 758 |
| Bst6I | CTCTTC | 2 cut(s) | 282, 630 |
| BstACI | GRCGYC | 1 cut(s) | 5 |
| BstAUI | TGTACA | 1 cut(s) | 231 |
| BstC8I | GCNNGC | 5 cut(s) | 490, 775, 812, 961, 981 |
| BstDEI | CTNAG | 5 cut(s) | 26, 314, 410, 504, 612 |
| BstDSI | CCRYGG | 1 cut(s) | 604 |
| BstF5I | GGATG | 7 cut(s) | 280, 296, 348, 358, 457, 711, 940 |
| BstHHI | GCGC | 1 cut(s) | 979 |
| BstKTI | GATC | 6 cut(s) | 88, 94, 421, 575, 667, 834 |
| BstMBI | GATC | 6 cut(s) | 85, 91, 418, 572, 664, 831 |
| BstMCI | CGRYCG | 1 cut(s) | 808 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 103, 509, 534, 690, 820, 894, 917 |
| BstNI | CCWGG | 3 cut(s) | 426, 629, 758 |
| BstNSI | RCATGY | 3 cut(s) | 232, 238, 814 |
| BstSCI | CCNGG | 5 cut(s) | 424, 627, 756, 931, 932 |
| BstSFI | CTRYAG | 3 cut(s) | 145, 526, 815 |
| BstV1I | GCAGC | 5 cut(s) | 347, 801, 829, 832, 900 |
| BstX2I | RGATCY | 1 cut(s) | 418 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 469 |
| BstYI | RGATCY | 1 cut(s) | 418 |
| Bsu36I | CCTNAGG | 1 cut(s) | 26 |
| BsuRI | GGCC | 5 cut(s) | 207, 377, 512, 724, 920 |
| BtgI | CCRYGG | 1 cut(s) | 604 |
| BtsCI | GGATG | 7 cut(s) | 280, 296, 348, 358, 457, 711, 940 |
| BtsI | GCAGTG | 1 cut(s) | 990 |
| BtsIMutI | CAGTG | 1 cut(s) | 990 |
| Cac8I | GCNNGC | 5 cut(s) | 490, 775, 812, 961, 981 |
| CfoI | GCGC | 1 cut(s) | 979 |
| Cfr10I | RCCGGY | 1 cut(s) | 373 |
| Cfr13I | GGNCC | 7 cut(s) | 205, 625, 723, 741, 754, 918, 937 |
| Cfr9I | CCCGGG | 1 cut(s) | 932 |
| Csp6I | GTAC | 6 cut(s) | 58, 129, 232, 329, 484, 699 |
| CviAII | CATG | 7 cut(s) | 124, 229, 235, 579, 643, 751, 811 |
| CviQI | GTAC | 6 cut(s) | 58, 129, 232, 329, 484, 699 |
| DdeI | CTNAG | 5 cut(s) | 26, 314, 410, 504, 612 |
| DpnI | GATC | 6 cut(s) | 87, 93, 420, 574, 666, 833 |
| DpnII | GATC | 6 cut(s) | 85, 91, 418, 572, 664, 831 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 28 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 28 |
| Eam1104I | CTCTTC | 2 cut(s) | 282, 630 |
| EarI | CTCTTC | 2 cut(s) | 282, 630 |
| EciI | GGCGGA | 1 cut(s) | 844 |
| Eco130I | CCWWGG | 1 cut(s) | 404 |
| Eco147I | AGGCCT | 1 cut(s) | 512 |
| Eco47I | GGWCC | 4 cut(s) | 625, 741, 754, 937 |
| Eco57I | CTGAAG | 1 cut(s) | 664 |
| Eco81I | CCTNAGG | 1 cut(s) | 26 |
| Eco88I | CYCGRG | 2 cut(s) | 932, 1027 |
| EcoO109I | RGGNCCY | 1 cut(s) | 741 |
| EcoRII | CCWGG | 3 cut(s) | 424, 627, 756 |
| EcoT14I | CCWWGG | 1 cut(s) | 404 |
| ErhI | CCWWGG | 1 cut(s) | 404 |
| FaeI | CATG | 7 cut(s) | 127, 232, 238, 582, 646, 754, 814 |
| FaqI | GGGAC | 4 cut(s) | 281, 727, 915, 950 |
| FatI | CATG | 7 cut(s) | 123, 228, 234, 578, 642, 750, 810 |
| FbaI | TGATCA | 2 cut(s) | 85, 664 |
| Fnu4HI | GCNGC | 6 cut(s) | 311, 336, 815, 818, 821, 889 |
| FokI | GGATG | 7 cut(s) | 283, 287, 355, 365, 444, 718, 927 |
| Fsp4HI | GCNGC | 6 cut(s) | 311, 336, 815, 818, 821, 889 |
| FspBI | CTAG | 3 cut(s) | 114, 405, 489 |
| GlaI | GCGC | 1 cut(s) | 978 |
| GluI | GCNGC | 6 cut(s) | 311, 336, 815, 818, 821, 889 |
| GsaI | CCCAGC | 2 cut(s) | 342, 435 |
| GsuI | CTGGAG | 2 cut(s) | 650, 779 |
| HaeIII | GGCC | 5 cut(s) | 207, 377, 512, 724, 920 |
| HapII | CCGG | 4 cut(s) | 374, 392, 623, 933 |
| HhaI | GCGC | 1 cut(s) | 979 |
| Hin1I | GRCGYC | 1 cut(s) | 5 |
| Hin1II | CATG | 7 cut(s) | 127, 232, 238, 582, 646, 754, 814 |
| Hin6I | GCGC | 1 cut(s) | 977 |
| HinP1I | GCGC | 1 cut(s) | 977 |
| HincII | GTYRAC | 1 cut(s) | 348 |
| HindII | GTYRAC | 1 cut(s) | 348 |
| HinfI | GANTC | 3 cut(s) | 293, 359, 439 |
| HpaII | CCGG | 4 cut(s) | 374, 392, 623, 933 |
| HphI | GGTGA | 5 cut(s) | 65, 579, 674, 724, 996 |
| Hpy166II | GTNNAC | 3 cut(s) | 129, 348, 475 |
| Hpy188I | TCNGA | 3 cut(s) | 10, 364, 507 |
| Hpy188III | TCNNGA | 1 cut(s) | 89 |
| Hpy8I | GTNNAC | 3 cut(s) | 129, 348, 475 |
| Hpy99I | CGWCG | 2 cut(s) | 65, 77 |
| HpyAV | CCTTC | 5 cut(s) | 44, 71, 398, 502, 846 |
| HpyCH4V | TGCA | 7 cut(s) | 46, 457, 528, 750, 777, 817, 1001 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 103, 509, 534, 690, 820, 894, 917 |
| HpyF3I | CTNAG | 5 cut(s) | 26, 314, 410, 504, 612 |
| Hsp92I | GRCGYC | 1 cut(s) | 5 |
| Hsp92II | CATG | 7 cut(s) | 127, 232, 238, 582, 646, 754, 814 |
| HspAI | GCGC | 1 cut(s) | 977 |
| Ksp22I | TGATCA | 2 cut(s) | 85, 664 |
| Kzo9I | GATC | 6 cut(s) | 85, 91, 418, 572, 664, 831 |
| LmnI | GCTCC | 3 cut(s) | 534, 608, 799 |
| Lsp1109I | GCAGC | 5 cut(s) | 347, 801, 829, 832, 900 |
| LweI | GCATC | 3 cut(s) | 466, 1004, 1010 |
| MaeI | CTAG | 3 cut(s) | 114, 405, 489 |
| MaeIII | GTNAC | 3 cut(s) | 237, 380, 671 |
| MalI | GATC | 6 cut(s) | 87, 93, 420, 574, 666, 833 |
| MboI | GATC | 6 cut(s) | 85, 91, 418, 572, 664, 831 |
| MboII | GAAGA | 3 cut(s) | 296, 299, 647 |
| MflI | RGATCY | 1 cut(s) | 418 |
| MhlI | GDGCHC | 1 cut(s) | 804 |
| MluCI | AATT | 4 cut(s) | 136, 184, 463, 898 |
| MmeI | TCCRAC | 2 cut(s) | 387, 777 |
| MseI | TTAA | 1 cut(s) | 447 |
| MslI | CAYNNNNRTG | 2 cut(s) | 233, 647 |
| MspA1I | CMGCKG | 3 cut(s) | 338, 684, 891 |
| MspI | CCGG | 4 cut(s) | 374, 392, 623, 933 |
| MspR9I | CCNGG | 5 cut(s) | 426, 629, 758, 933, 934 |
| MvaI | CCWGG | 3 cut(s) | 426, 629, 758 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 103, 509, 534, 690, 820, 894, 917 |
| NciI | CCSGG | 2 cut(s) | 933, 934 |
| NdeII | GATC | 6 cut(s) | 85, 91, 418, 572, 664, 831 |
| NheI | GCTAGC | 1 cut(s) | 488 |
| NlaIII | CATG | 7 cut(s) | 127, 232, 238, 582, 646, 754, 814 |
| NlaIV | GGNNCC | 3 cut(s) | 372, 743, 938 |
| NmeAIII | GCCGAG | 2 cut(s) | 765, 820 |
| NmuCI | GTSAC | 2 cut(s) | 237, 671 |
| NspI | RCATGY | 3 cut(s) | 232, 238, 814 |
| PaeI | GCATGC | 1 cut(s) | 814 |
| PaeR7I | CTCGAG | 1 cut(s) | 1027 |
| PceI | AGGCCT | 1 cut(s) | 512 |
| PciI | ACATGT | 2 cut(s) | 228, 234 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 69 |
| PfeI | GAWTC | 3 cut(s) | 293, 359, 439 |
| PkrI | GCNGC | 6 cut(s) | 312, 337, 816, 819, 822, 890 |
| PpuMI | RGGWCCY | 1 cut(s) | 741 |
| PscI | ACATGT | 2 cut(s) | 228, 234 |
| Psp5II | RGGWCCY | 1 cut(s) | 741 |
| Psp6I | CCWGG | 3 cut(s) | 424, 627, 756 |
| PspFI | CCCAGC | 2 cut(s) | 338, 431 |
| PspGI | CCWGG | 3 cut(s) | 424, 627, 756 |
| PspN4I | GGNNCC | 3 cut(s) | 372, 743, 938 |
| PspPI | GGNCC | 7 cut(s) | 205, 625, 723, 741, 754, 918, 937 |
| PspPPI | RGGWCCY | 1 cut(s) | 741 |
| PspXI | VCTCGAGB | 1 cut(s) | 1027 |
| PstI | CTGCAG | 2 cut(s) | 530, 819 |
| PsuI | RGATCY | 1 cut(s) | 418 |
| PvuII | CAGCTG | 1 cut(s) | 338 |
| RsaI | GTAC | 6 cut(s) | 59, 130, 233, 330, 485, 700 |
| RsaNI | GTAC | 6 cut(s) | 58, 129, 232, 329, 484, 699 |
| RseI | CAYNNNNRTG | 2 cut(s) | 233, 647 |
| SaqAI | TTAA | 1 cut(s) | 447 |
| SatI | GCNGC | 6 cut(s) | 311, 336, 815, 818, 821, 889 |
| Sau3AI | GATC | 6 cut(s) | 85, 91, 418, 572, 664, 831 |
| Sau96I | GGNCC | 7 cut(s) | 205, 625, 723, 741, 754, 918, 937 |
| ScrFI | CCNGG | 5 cut(s) | 426, 629, 758, 933, 934 |
| SduI | GDGCHC | 1 cut(s) | 804 |
| SfaNI | GCATC | 3 cut(s) | 466, 1004, 1010 |
| SfcI | CTRYAG | 3 cut(s) | 145, 526, 815 |
| Sfr274I | CTCGAG | 1 cut(s) | 1027 |
| SinI | GGWCC | 4 cut(s) | 625, 741, 754, 937 |
| SlaI | CTCGAG | 1 cut(s) | 1027 |
| SmaI | CCCGGG | 1 cut(s) | 934 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 233, 647 |
| SmlI | CTYRAG | 3 cut(s) | 514, 965, 1027 |
| SmoI | CTYRAG | 3 cut(s) | 514, 965, 1027 |
| SphI | GCATGC | 1 cut(s) | 814 |
| Sse9I | AATT | 4 cut(s) | 136, 184, 463, 898 |
| SseBI | AGGCCT | 1 cut(s) | 512 |
| SsiI | CCGC | 6 cut(s) | 310, 684, 808, 855, 891, 944 |
| SspMI | CTAG | 3 cut(s) | 114, 405, 489 |
| StuI | AGGCCT | 1 cut(s) | 512 |
| StyD4I | CCNGG | 5 cut(s) | 424, 627, 756, 931, 932 |
| StyI | CCWWGG | 1 cut(s) | 404 |
| TaqI | TCGA | 3 cut(s) | 792, 867, 1028 |
| TasI | AATT | 4 cut(s) | 136, 184, 463, 898 |
| TatI | WGTACW | 1 cut(s) | 231 |
| TauI | GCSGC | 1 cut(s) | 313 |
| TfiI | GAWTC | 3 cut(s) | 293, 359, 439 |
| Tru1I | TTAA | 1 cut(s) | 447 |
| Tru9I | TTAA | 1 cut(s) | 447 |
| TscAI | CASTG | 1 cut(s) | 990 |
| TseFI | GTSAC | 2 cut(s) | 237, 671 |
| TseI | GCWGC | 5 cut(s) | 335, 814, 817, 820, 888 |
| Tsp45I | GTSAC | 2 cut(s) | 237, 671 |
| TspDTI | ATGAA | 6 cut(s) | 176, 239, 297, 513, 659, 665 |
| TspGWI | ACGGA | 4 cut(s) | 130, 365, 383, 621 |
| TspMI | CCCGGG | 1 cut(s) | 932 |
| TspRI | CASTG | 1 cut(s) | 990 |
| VpaK11BI | GGWCC | 4 cut(s) | 625, 741, 754, 937 |
| XceI | RCATGY | 3 cut(s) | 232, 238, 814 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 215, 469 |
| XhoI | CTCGAG | 1 cut(s) | 1027 |
| XmaI | CCCGGG | 1 cut(s) | 932 |
| XmaJI | CCTAGG | 1 cut(s) | 404 |
| XspI | CTAG | 3 cut(s) | 114, 405, 489 |