ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 835 |
| Acc16I | TGCGCA | 1 cut(s) | 96 |
| Acc36I | ACCTGC | 2 cut(s) | 563, 1292 |
| AccI | GTMKAC | 1 cut(s) | 189 |
| AciI | CCGC | 1 cut(s) | 1181 |
| AclWI | GGATC | 6 cut(s) | 172, 242, 255, 309, 1172, 1185 |
| AcoI | YGGCCR | 1 cut(s) | 138 |
| AcsI | RAATTY | 3 cut(s) | 433, 1035, 1118 |
| AcuI | CTGAAG | 2 cut(s) | 819, 1167 |
| AfaI | GTAC | 1 cut(s) | 1295 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1010 |
| AflIII | ACRYGT | 1 cut(s) | 772 |
| AgeI | ACCGGT | 1 cut(s) | 616 |
| AgsI | TTSAA | 6 cut(s) | 407, 740, 819, 890, 936, 1033 |
| AjnI | CCWGG | 2 cut(s) | 1081, 1153 |
| AluBI | AGCT | 1 cut(s) | 1107 |
| AluI | AGCT | 1 cut(s) | 1107 |
| Alw26I | GTCTC | 2 cut(s) | 737, 1137 |
| AlwI | GGATC | 6 cut(s) | 172, 242, 255, 309, 1172, 1185 |
| AoxI | GGCC | 3 cut(s) | 138, 780, 1138 |
| ApeKI | GCWGC | 5 cut(s) | 35, 808, 1158, 1268, 1271 |
| ApoI | RAATTY | 3 cut(s) | 433, 1035, 1118 |
| AsiGI | ACCGGT | 1 cut(s) | 616 |
| AspA2I | CCTAGG | 1 cut(s) | 398 |
| AspLEI | GCGC | 1 cut(s) | 97 |
| AsuC2I | CCSGG | 1 cut(s) | 884 |
| AsuHPI | GGTGA | 3 cut(s) | 226, 825, 1291 |
| AsuNHI | GCTAGC | 2 cut(s) | 53, 712 |
| AvrII | CCTAGG | 1 cut(s) | 398 |
| AxyI | CCTNAGG | 2 cut(s) | 467, 1009 |
| BalI | TGGCCA | 1 cut(s) | 140 |
| BamHI | GGATCC | 2 cut(s) | 247, 1177 |
| BanII | GRGCYC | 1 cut(s) | 1001 |
| BbvI | GCAGC | 5 cut(s) | 22, 820, 1170, 1255, 1258 |
| BccI | CCATC | 4 cut(s) | 158, 292, 890, 976 |
| BceAI | ACGGC | 1 cut(s) | 39 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 690, 724 |
| BciT130I | CCWGG | 2 cut(s) | 1083, 1155 |
| BcnI | CCSGG | 1 cut(s) | 884 |
| BcoDI | GTCTC | 2 cut(s) | 737, 1137 |
| BfaI | CTAG | 7 cut(s) | 54, 356, 399, 510, 713, 1104, 1317 |
| BfmI | CTRYAG | 5 cut(s) | 186, 570, 699, 806, 869 |
| BfuAI | ACCTGC | 2 cut(s) | 563, 1292 |
| BglII | AGATCT | 1 cut(s) | 219 |
| BisI | GCNGC | 5 cut(s) | 36, 809, 1159, 1269, 1272 |
| BlnI | CCTAGG | 1 cut(s) | 398 |
| BlpI | GCTNAGC | 1 cut(s) | 129 |
| BlsI | GCNGC | 5 cut(s) | 37, 810, 1160, 1270, 1273 |
| Bme1390I | CCNGG | 3 cut(s) | 884, 1083, 1155 |
| BmiI | GGNNCC | 3 cut(s) | 249, 696, 1179 |
| BmrFI | CCNGG | 3 cut(s) | 884, 1083, 1155 |
| BmsI | GCATC | 5 cut(s) | 14, 35, 47, 281, 1066 |
| BmtI | GCTAGC | 2 cut(s) | 57, 716 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 129 |
| BpuEI | CTTGAG | 2 cut(s) | 359, 560 |
| BpuMI | CCSGG | 1 cut(s) | 884 |
| BsaAI | YACGTR | 2 cut(s) | 656, 674 |
| BsaI | GGTCTC | 2 cut(s) | 737, 1137 |
| BsaJI | CCNNGG | 4 cut(s) | 398, 690, 1082, 1173 |
| BsaWI | WCCGGW | 1 cut(s) | 616 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 739, 769, 1291, 1321 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1010 |
| Bse118I | RCCGGY | 2 cut(s) | 604, 616 |
| Bse1I | ACTGG | 2 cut(s) | 491, 725 |
| Bse21I | CCTNAGG | 2 cut(s) | 467, 1009 |
| Bse3DI | GCAATG | 2 cut(s) | 64, 961 |
| BseBI | CCWGG | 2 cut(s) | 1083, 1155 |
| BseDI | CCNNGG | 4 cut(s) | 398, 690, 1082, 1173 |
| BseGI | GGATG | 4 cut(s) | 5, 26, 228, 987 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1010 |
| BseMI | GCAATG | 2 cut(s) | 64, 961 |
| BseMII | CTCAG | 1 cut(s) | 481 |
| BseNI | ACTGG | 2 cut(s) | 491, 725 |
| BseRI | GAGGAG | 2 cut(s) | 362, 959 |
| BseXI | GCAGC | 5 cut(s) | 22, 820, 1170, 1255, 1258 |
| BsgI | GTGCAG | 1 cut(s) | 1257 |
| Bsh1285I | CGRYCG | 1 cut(s) | 86 |
| BshFI | GGCC | 3 cut(s) | 140, 782, 1140 |
| BshTI | ACCGGT | 1 cut(s) | 616 |
| BsiEI | CGRYCG | 1 cut(s) | 86 |
| BsiSI | CCGG | 3 cut(s) | 605, 617, 884 |
| BslFI | GGGAC | 2 cut(s) | 841, 1178 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1010 |
| BsmAI | GTCTC | 2 cut(s) | 737, 1137 |
| BsmFI | GGGAC | 2 cut(s) | 841, 1178 |
| BsnI | GGCC | 3 cut(s) | 140, 782, 1140 |
| Bso31I | GGTCTC | 2 cut(s) | 737, 1137 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1001 |
| Bsp143I | GATC | 6 cut(s) | 70, 177, 219, 247, 301, 1177 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 129 |
| Bsp19I | CCATGG | 1 cut(s) | 690 |
| BspACI | CCGC | 1 cut(s) | 1181 |
| BspANI | GGCC | 3 cut(s) | 140, 782, 1140 |
| BspCNI | CTCAG | 1 cut(s) | 480 |
| BspHI | TCATGA | 1 cut(s) | 349 |
| BspLI | GGNNCC | 3 cut(s) | 249, 696, 1179 |
| BspMAI | CTGCAG | 3 cut(s) | 574, 703, 810 |
| BspMI | ACCTGC | 2 cut(s) | 563, 1292 |
| BspOI | GCTAGC | 2 cut(s) | 57, 716 |
| BspPI | GGATC | 6 cut(s) | 172, 242, 255, 309, 1172, 1185 |
| BspTNI | GGTCTC | 2 cut(s) | 737, 1137 |
| BsrDI | GCAATG | 2 cut(s) | 64, 961 |
| BsrFI | RCCGGY | 2 cut(s) | 604, 616 |
| BsrI | ACTGG | 2 cut(s) | 491, 725 |
| BssAI | RCCGGY | 2 cut(s) | 604, 616 |
| BssECI | CCNNGG | 4 cut(s) | 398, 690, 1082, 1173 |
| BssMI | GATC | 6 cut(s) | 70, 177, 219, 247, 301, 1177 |
| BssT1I | CCWWGG | 3 cut(s) | 398, 690, 1173 |
| Bst2UI | CCWGG | 2 cut(s) | 1083, 1155 |
| Bst4CI | ACNGT | 4 cut(s) | 84, 204, 837, 873 |
| Bst6I | CTCTTC | 1 cut(s) | 1205 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 32, 44, 456 |
| BstBAI | YACGTR | 2 cut(s) | 656, 674 |
| BstC8I | GCNNGC | 3 cut(s) | 55, 596, 714 |
| BstDEI | CTNAG | 4 cut(s) | 129, 467, 1009, 1302 |
| BstDSI | CCRYGG | 1 cut(s) | 690 |
| BstEII | GGTNACC | 1 cut(s) | 1279 |
| BstF5I | GGATG | 4 cut(s) | 5, 26, 228, 987 |
| BstHHI | GCGC | 1 cut(s) | 97 |
| BstKTI | GATC | 6 cut(s) | 73, 180, 222, 250, 304, 1180 |
| BstMAI | GTCTC | 2 cut(s) | 737, 1137 |
| BstMBI | GATC | 6 cut(s) | 70, 177, 219, 247, 301, 1177 |
| BstMCI | CGRYCG | 1 cut(s) | 86 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 32, 44, 456, 1113 |
| BstNI | CCWGG | 2 cut(s) | 1083, 1155 |
| BstNSI | RCATGY | 1 cut(s) | 776 |
| BstPI | GGTNACC | 1 cut(s) | 1279 |
| BstSCI | CCNGG | 3 cut(s) | 882, 1081, 1153 |
| BstSFI | CTRYAG | 5 cut(s) | 186, 570, 699, 806, 869 |
| BstV1I | GCAGC | 5 cut(s) | 22, 820, 1170, 1255, 1258 |
| BstX2I | RGATCY | 3 cut(s) | 219, 247, 1177 |
| BstYI | RGATCY | 3 cut(s) | 219, 247, 1177 |
| Bsu36I | CCTNAGG | 2 cut(s) | 467, 1009 |
| BsuRI | GGCC | 3 cut(s) | 140, 782, 1140 |
| BtgI | CCRYGG | 1 cut(s) | 690 |
| BtsCI | GGATG | 4 cut(s) | 5, 26, 228, 987 |
| BtsI | GCAGTG | 1 cut(s) | 1122 |
| BtsIMutI | CAGTG | 3 cut(s) | 200, 1122, 1143 |
| BveI | ACCTGC | 2 cut(s) | 563, 1292 |
| Cac8I | GCNNGC | 3 cut(s) | 55, 596, 714 |
| CciI | TCATGA | 1 cut(s) | 349 |
| CfoI | GCGC | 1 cut(s) | 97 |
| Cfr10I | RCCGGY | 2 cut(s) | 604, 616 |
| Csp6I | GTAC | 1 cut(s) | 1294 |
| CspAI | ACCGGT | 1 cut(s) | 616 |
| CviAII | CATG | 7 cut(s) | 236, 350, 499, 590, 691, 773, 901 |
| CviQI | GTAC | 1 cut(s) | 1294 |
| DdeI | CTNAG | 4 cut(s) | 129, 467, 1009, 1302 |
| DpnI | GATC | 6 cut(s) | 72, 179, 221, 249, 303, 1179 |
| DpnII | GATC | 6 cut(s) | 70, 177, 219, 247, 301, 1177 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 835 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 835 |
| EaeI | YGGCCR | 1 cut(s) | 138 |
| Eam1104I | CTCTTC | 1 cut(s) | 1205 |
| EarI | CTCTTC | 1 cut(s) | 1205 |
| Eco130I | CCWWGG | 3 cut(s) | 398, 690, 1173 |
| Eco24I | GRGCYC | 1 cut(s) | 1001 |
| Eco31I | GGTCTC | 2 cut(s) | 737, 1137 |
| Eco32I | GATATC | 2 cut(s) | 64, 268 |
| Eco57I | CTGAAG | 2 cut(s) | 819, 1167 |
| Eco81I | CCTNAGG | 2 cut(s) | 467, 1009 |
| Eco91I | GGTNACC | 1 cut(s) | 1279 |
| EcoO65I | GGTNACC | 1 cut(s) | 1279 |
| EcoRII | CCWGG | 2 cut(s) | 1081, 1153 |
| EcoRV | GATATC | 2 cut(s) | 64, 268 |
| EcoT14I | CCWWGG | 3 cut(s) | 398, 690, 1173 |
| EcoT38I | GRGCYC | 1 cut(s) | 1001 |
| ErhI | CCWWGG | 3 cut(s) | 398, 690, 1173 |
| FaeI | CATG | 7 cut(s) | 239, 353, 502, 593, 694, 776, 904 |
| FaqI | GGGAC | 2 cut(s) | 841, 1178 |
| FatI | CATG | 7 cut(s) | 235, 349, 498, 589, 690, 772, 900 |
| FblI | GTMKAC | 1 cut(s) | 189 |
| Fnu4HI | GCNGC | 5 cut(s) | 36, 809, 1159, 1269, 1272 |
| FokI | GGATG | 3 cut(s) | 13, 215, 994 |
| FriOI | GRGCYC | 1 cut(s) | 1001 |
| Fsp4HI | GCNGC | 5 cut(s) | 36, 809, 1159, 1269, 1272 |
| FspBI | CTAG | 7 cut(s) | 54, 356, 399, 510, 713, 1104, 1317 |
| FspI | TGCGCA | 1 cut(s) | 96 |
| GlaI | GCGC | 1 cut(s) | 96 |
| GluI | GCNGC | 5 cut(s) | 36, 809, 1159, 1269, 1272 |
| HaeIII | GGCC | 3 cut(s) | 140, 782, 1140 |
| HapII | CCGG | 3 cut(s) | 605, 617, 884 |
| HhaI | GCGC | 1 cut(s) | 97 |
| Hin1II | CATG | 7 cut(s) | 239, 353, 502, 593, 694, 776, 904 |
| Hin6I | GCGC | 1 cut(s) | 95 |
| HinP1I | GCGC | 1 cut(s) | 95 |
| HinfI | GANTC | 3 cut(s) | 905, 932, 947 |
| HpaII | CCGG | 3 cut(s) | 605, 617, 884 |
| HphI | GGTGA | 3 cut(s) | 226, 825, 1291 |
| Hpy166II | GTNNAC | 3 cut(s) | 190, 200, 659 |
| Hpy188I | TCNGA | 3 cut(s) | 639, 1023, 1059 |
| Hpy8I | GTNNAC | 3 cut(s) | 190, 200, 659 |
| Hpy99I | CGWCG | 1 cut(s) | 105 |
| HpyAV | CCTTC | 6 cut(s) | 322, 430, 470, 564, 746, 825 |
| HpyCH4III | ACNGT | 4 cut(s) | 84, 204, 837, 873 |
| HpyCH4IV | ACGT | 3 cut(s) | 100, 655, 673 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 32, 44, 456, 1113 |
| HpyF3I | CTNAG | 4 cut(s) | 129, 467, 1009, 1302 |
| HpySE526I | ACGT | 3 cut(s) | 100, 655, 673 |
| Hsp92II | CATG | 7 cut(s) | 239, 353, 502, 593, 694, 776, 904 |
| HspAI | GCGC | 1 cut(s) | 95 |
| Kzo9I | GATC | 6 cut(s) | 70, 177, 219, 247, 301, 1177 |
| LmnI | GCTCC | 3 cut(s) | 400, 690, 1047 |
| Lsp1109I | GCAGC | 5 cut(s) | 22, 820, 1170, 1255, 1258 |
| LweI | GCATC | 5 cut(s) | 14, 35, 47, 281, 1066 |
| MaeI | CTAG | 7 cut(s) | 54, 356, 399, 510, 713, 1104, 1317 |
| MaeII | ACGT | 3 cut(s) | 100, 655, 673 |
| MaeIII | GTNAC | 4 cut(s) | 19, 674, 906, 1279 |
| MalI | GATC | 6 cut(s) | 72, 179, 221, 249, 303, 1179 |
| MboI | GATC | 6 cut(s) | 70, 177, 219, 247, 301, 1177 |
| MboII | GAAGA | 6 cut(s) | 229, 391, 779, 1036, 1099, 1222 |
| MflI | RGATCY | 3 cut(s) | 219, 247, 1177 |
| MhlI | GDGCHC | 1 cut(s) | 1001 |
| MlsI | TGGCCA | 1 cut(s) | 140 |
| MluNI | TGGCCA | 1 cut(s) | 140 |
| MlyI | GAGTC | 2 cut(s) | 914, 956 |
| MmeI | TCCRAC | 3 cut(s) | 421, 782, 1028 |
| Mox20I | TGGCCA | 1 cut(s) | 140 |
| MscI | TGGCCA | 1 cut(s) | 140 |
| MseI | TTAA | 1 cut(s) | 1166 |
| Msp20I | TGGCCA | 1 cut(s) | 140 |
| MspI | CCGG | 3 cut(s) | 605, 617, 884 |
| MspR9I | CCNGG | 3 cut(s) | 884, 1083, 1155 |
| MvaI | CCWGG | 2 cut(s) | 1083, 1155 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 32, 44, 456, 1113 |
| NciI | CCSGG | 1 cut(s) | 884 |
| NcoI | CCATGG | 1 cut(s) | 690 |
| NdeII | GATC | 6 cut(s) | 70, 177, 219, 247, 301, 1177 |
| NheI | GCTAGC | 2 cut(s) | 53, 712 |
| NlaIII | CATG | 7 cut(s) | 239, 353, 502, 593, 694, 776, 904 |
| NlaIV | GGNNCC | 3 cut(s) | 249, 696, 1179 |
| NmuCI | GTSAC | 3 cut(s) | 674, 906, 1279 |
| NsbI | TGCGCA | 1 cut(s) | 96 |
| NspI | RCATGY | 1 cut(s) | 776 |
| PagI | TCATGA | 1 cut(s) | 349 |
| PciI | ACATGT | 1 cut(s) | 772 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 106 |
| PfeI | GAWTC | 1 cut(s) | 932 |
| PinAI | ACCGGT | 1 cut(s) | 616 |
| PkrI | GCNGC | 5 cut(s) | 37, 810, 1160, 1270, 1273 |
| PleI | GAGTC | 2 cut(s) | 913, 955 |
| PpsI | GAGTC | 2 cut(s) | 913, 955 |
| Ppu21I | YACGTR | 2 cut(s) | 656, 674 |
| PscI | ACATGT | 1 cut(s) | 772 |
| Psp6I | CCWGG | 2 cut(s) | 1081, 1153 |
| PspEI | GGTNACC | 1 cut(s) | 1279 |
| PspGI | CCWGG | 2 cut(s) | 1081, 1153 |
| PspN4I | GGNNCC | 3 cut(s) | 249, 696, 1179 |
| PstI | CTGCAG | 3 cut(s) | 574, 703, 810 |
| PsuI | RGATCY | 3 cut(s) | 219, 247, 1177 |
| RsaI | GTAC | 1 cut(s) | 1295 |
| RsaNI | GTAC | 1 cut(s) | 1294 |
| SaqAI | TTAA | 1 cut(s) | 1166 |
| SatI | GCNGC | 5 cut(s) | 36, 809, 1159, 1269, 1272 |
| Sau3AI | GATC | 6 cut(s) | 70, 177, 219, 247, 301, 1177 |
| SchI | GAGTC | 2 cut(s) | 914, 956 |
| ScrFI | CCNGG | 3 cut(s) | 884, 1083, 1155 |
| SduI | GDGCHC | 1 cut(s) | 1001 |
| SfaNI | GCATC | 5 cut(s) | 14, 35, 47, 281, 1066 |
| SfcI | CTRYAG | 5 cut(s) | 186, 570, 699, 806, 869 |
| SmlI | CTYRAG | 2 cut(s) | 374, 539 |
| SmoI | CTYRAG | 2 cut(s) | 374, 539 |
| SsiI | CCGC | 1 cut(s) | 1181 |
| SspI | AATATT | 1 cut(s) | 793 |
| SspMI | CTAG | 7 cut(s) | 54, 356, 399, 510, 713, 1104, 1317 |
| StyD4I | CCNGG | 3 cut(s) | 882, 1081, 1153 |
| StyI | CCWWGG | 3 cut(s) | 398, 690, 1173 |
| TaaI | ACNGT | 4 cut(s) | 84, 204, 837, 873 |
| TaiI | ACGT | 3 cut(s) | 103, 658, 676 |
| TaqI | TCGA | 4 cut(s) | 86, 109, 972, 1232 |
| TaqII | GACCGA | 2 cut(s) | 529, 1119 |
| TfiI | GAWTC | 1 cut(s) | 932 |
| Tru1I | TTAA | 1 cut(s) | 1166 |
| Tru9I | TTAA | 1 cut(s) | 1166 |
| TscAI | CASTG | 3 cut(s) | 207, 1129, 1150 |
| TseFI | GTSAC | 3 cut(s) | 674, 906, 1279 |
| TseI | GCWGC | 5 cut(s) | 35, 808, 1158, 1268, 1271 |
| Tsp45I | GTSAC | 3 cut(s) | 674, 906, 1279 |
| TspDTI | ATGAA | 3 cut(s) | 546, 578, 1109 |
| TspRI | CASTG | 3 cut(s) | 207, 1129, 1150 |
| XapI | RAATTY | 3 cut(s) | 433, 1035, 1118 |
| XceI | RCATGY | 1 cut(s) | 776 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1258 |
| XmaJI | CCTAGG | 1 cut(s) | 398 |
| XmiI | GTMKAC | 1 cut(s) | 189 |
| XspI | CTAG | 7 cut(s) | 54, 356, 399, 510, 713, 1104, 1317 |