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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 31 |
| AciI | CCGC | 1 cut(s) | 82 |
| AclWI | GGATC | 2 cut(s) | 34, 356 |
| AcuI | CTGAAG | 1 cut(s) | 92 |
| AfaI | GTAC | 1 cut(s) | 343 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 31, 338 |
| AgsI | TTSAA | 1 cut(s) | 359 |
| AjnI | CCWGG | 1 cut(s) | 30 |
| Alw26I | GTCTC | 1 cut(s) | 209 |
| AlwI | GGATC | 2 cut(s) | 34, 356 |
| Ama87I | CYCGRG | 1 cut(s) | 257 |
| ApeKI | GCWGC | 1 cut(s) | 277 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 171 |
| AsuC2I | CCSGG | 2 cut(s) | 258, 259 |
| AsuHPI | GGTGA | 1 cut(s) | 84 |
| AvaI | CYCGRG | 1 cut(s) | 257 |
| AxyI | CCTNAGG | 1 cut(s) | 333 |
| BanII | GRGCYC | 1 cut(s) | 60 |
| BbvI | GCAGC | 1 cut(s) | 264 |
| BccI | CCATC | 2 cut(s) | 121, 259 |
| BceAI | ACGGC | 1 cut(s) | 157 |
| BciT130I | CCWGG | 1 cut(s) | 32 |
| BcnI | CCSGG | 2 cut(s) | 258, 259 |
| BcoDI | GTCTC | 1 cut(s) | 209 |
| BfaI | CTAG | 2 cut(s) | 222, 233 |
| BisI | GCNGC | 2 cut(s) | 82, 278 |
| BlsI | GCNGC | 2 cut(s) | 83, 279 |
| Bme1390I | CCNGG | 3 cut(s) | 32, 258, 259 |
| BmeT110I | CYCGRG | 1 cut(s) | 257 |
| BmiI | GGNNCC | 2 cut(s) | 57, 66 |
| BmrFI | CCNGG | 3 cut(s) | 32, 258, 259 |
| BmsI | GCATC | 1 cut(s) | 243 |
| BoxI | GACNNNNGTC | 1 cut(s) | 289 |
| BpuMI | CCSGG | 2 cut(s) | 258, 259 |
| BsaJI | CCNNGG | 4 cut(s) | 30, 60, 257, 258 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 31, 338 |
| Bse1I | ACTGG | 2 cut(s) | 19, 239 |
| Bse21I | CCTNAGG | 1 cut(s) | 333 |
| BseBI | CCWGG | 1 cut(s) | 32 |
| BseDI | CCNNGG | 4 cut(s) | 30, 60, 257, 258 |
| BseGI | GGATG | 2 cut(s) | 136, 270 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 31, 338 |
| BseMII | CTCAG | 1 cut(s) | 347 |
| BseNI | ACTGG | 2 cut(s) | 19, 239 |
| BseRI | GAGGAG | 1 cut(s) | 68 |
| BseXI | GCAGC | 1 cut(s) | 264 |
| BsgI | GTGCAG | 1 cut(s) | 135 |
| BsiHKCI | CYCGRG | 1 cut(s) | 257 |
| BsiSI | CCGG | 1 cut(s) | 258 |
| BslFI | GGGAC | 1 cut(s) | 277 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 31, 338 |
| BsmAI | GTCTC | 1 cut(s) | 209 |
| BsmFI | GGGAC | 1 cut(s) | 277 |
| BsoBI | CYCGRG | 1 cut(s) | 257 |
| Bsp1286I | GDGCHC | 1 cut(s) | 60 |
| Bsp143I | GATC | 3 cut(s) | 39, 361, 366 |
| Bsp19I | CCATGG | 1 cut(s) | 60 |
| BspACI | CCGC | 1 cut(s) | 82 |
| BspCNI | CTCAG | 1 cut(s) | 346 |
| BspHI | TCATGA | 1 cut(s) | 249 |
| BspLI | GGNNCC | 2 cut(s) | 57, 66 |
| BspPI | GGATC | 2 cut(s) | 34, 356 |
| BspQI | GCTCTTC | 1 cut(s) | 186 |
| BsrI | ACTGG | 2 cut(s) | 19, 239 |
| BssECI | CCNNGG | 4 cut(s) | 30, 60, 257, 258 |
| BssMI | GATC | 3 cut(s) | 39, 361, 366 |
| BssT1I | CCWWGG | 1 cut(s) | 60 |
| Bst2UI | CCWGG | 1 cut(s) | 32 |
| Bst6I | CTCTTC | 1 cut(s) | 186 |
| BstC8I | GCNNGC | 1 cut(s) | 275 |
| BstDEI | CTNAG | 2 cut(s) | 333, 370 |
| BstDSI | CCRYGG | 1 cut(s) | 60 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 336 |
| BstF5I | GGATG | 2 cut(s) | 136, 270 |
| BstKTI | GATC | 3 cut(s) | 42, 364, 369 |
| BstMAI | GTCTC | 1 cut(s) | 209 |
| BstMBI | GATC | 3 cut(s) | 39, 361, 366 |
| BstNI | CCWGG | 1 cut(s) | 32 |
| BstNSI | RCATGY | 1 cut(s) | 277 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 289 |
| BstSCI | CCNGG | 3 cut(s) | 30, 256, 257 |
| BstV1I | GCAGC | 1 cut(s) | 264 |
| BstX2I | RGATCY | 1 cut(s) | 361 |
| BstYI | RGATCY | 1 cut(s) | 361 |
| Bsu36I | CCTNAGG | 1 cut(s) | 333 |
| BtgI | CCRYGG | 1 cut(s) | 60 |
| BtsCI | GGATG | 2 cut(s) | 136, 270 |
| BtsI | GCAGTG | 1 cut(s) | 189 |
| BtsIMutI | CAGTG | 3 cut(s) | 18, 189, 246 |
| Cac8I | GCNNGC | 1 cut(s) | 275 |
| CciI | TCATGA | 1 cut(s) | 249 |
| Cfr9I | CCCGGG | 1 cut(s) | 257 |
| Csp6I | GTAC | 1 cut(s) | 342 |
| CviAII | CATG | 4 cut(s) | 61, 157, 250, 274 |
| CviJI | RGCY | 2 cut(s) | 58, 81 |
| CviKI_1 | RGCY | 2 cut(s) | 58, 81 |
| CviQI | GTAC | 1 cut(s) | 342 |
| DdeI | CTNAG | 2 cut(s) | 333, 370 |
| DpnI | GATC | 3 cut(s) | 41, 363, 368 |
| DpnII | GATC | 3 cut(s) | 39, 361, 366 |
| Eam1104I | CTCTTC | 1 cut(s) | 186 |
| EarI | CTCTTC | 1 cut(s) | 186 |
| Eco130I | CCWWGG | 1 cut(s) | 60 |
| Eco24I | GRGCYC | 1 cut(s) | 60 |
| Eco57I | CTGAAG | 1 cut(s) | 92 |
| Eco81I | CCTNAGG | 1 cut(s) | 333 |
| Eco88I | CYCGRG | 1 cut(s) | 257 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 336 |
| EcoRII | CCWGG | 1 cut(s) | 30 |
| EcoT14I | CCWWGG | 1 cut(s) | 60 |
| EcoT38I | GRGCYC | 1 cut(s) | 60 |
| ErhI | CCWWGG | 1 cut(s) | 60 |
| FaeI | CATG | 4 cut(s) | 64, 160, 253, 277 |
| FaiI | YATR | 6 cut(s) | 62, 125, 158, 230, 251, 275 |
| FaqI | GGGAC | 1 cut(s) | 277 |
| FatI | CATG | 4 cut(s) | 60, 156, 249, 273 |
| Fnu4HI | GCNGC | 2 cut(s) | 82, 278 |
| FokI | GGATG | 2 cut(s) | 143, 277 |
| FriOI | GRGCYC | 1 cut(s) | 60 |
| Fsp4HI | GCNGC | 2 cut(s) | 82, 278 |
| FspBI | CTAG | 2 cut(s) | 222, 233 |
| GluI | GCNGC | 2 cut(s) | 82, 278 |
| HapII | CCGG | 1 cut(s) | 258 |
| Hin1II | CATG | 4 cut(s) | 64, 160, 253, 277 |
| HinfI | GANTC | 3 cut(s) | 134, 172, 217 |
| HpaII | CCGG | 1 cut(s) | 258 |
| HphI | GGTGA | 1 cut(s) | 84 |
| Hpy188I | TCNGA | 3 cut(s) | 72, 366, 373 |
| Hpy188III | TCNNGA | 3 cut(s) | 43, 250, 359 |
| HpyAV | CCTTC | 1 cut(s) | 157 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 11, 152, 280 |
| HpyF3I | CTNAG | 2 cut(s) | 333, 370 |
| Hsp92II | CATG | 4 cut(s) | 64, 160, 253, 277 |
| Kzo9I | GATC | 3 cut(s) | 39, 361, 366 |
| LguI | GCTCTTC | 1 cut(s) | 186 |
| LmnI | GCTCC | 2 cut(s) | 55, 107 |
| LpnPI | CCDG | 6 cut(s) | 17, 44, 252, 271, 320, 330 |
| Lsp1109I | GCAGC | 1 cut(s) | 264 |
| LweI | GCATC | 1 cut(s) | 243 |
| MaeI | CTAG | 2 cut(s) | 222, 233 |
| MalI | GATC | 3 cut(s) | 41, 363, 368 |
| MboI | GATC | 3 cut(s) | 39, 361, 366 |
| MboII | GAAGA | 2 cut(s) | 172, 173 |
| MflI | RGATCY | 1 cut(s) | 361 |
| MhlI | GDGCHC | 1 cut(s) | 60 |
| MluCI | AATT | 1 cut(s) | 299 |
| MlyI | GAGTC | 2 cut(s) | 143, 211 |
| MnlI | CCTC | 9 cut(s) | 46, 78, 96, 100, 238, 262, 327, 332, 342 |
| MroXI | GAANNNNTTC | 1 cut(s) | 171 |
| MseI | TTAA | 2 cut(s) | 48, 379 |
| MspI | CCGG | 1 cut(s) | 258 |
| MspR9I | CCNGG | 3 cut(s) | 32, 258, 259 |
| MvaI | CCWGG | 1 cut(s) | 32 |
| NciI | CCSGG | 2 cut(s) | 258, 259 |
| NcoI | CCATGG | 1 cut(s) | 60 |
| NdeII | GATC | 3 cut(s) | 39, 361, 366 |
| NlaIII | CATG | 4 cut(s) | 64, 160, 253, 277 |
| NlaIV | GGNNCC | 2 cut(s) | 57, 66 |
| NspI | RCATGY | 1 cut(s) | 277 |
| PaeI | GCATGC | 1 cut(s) | 277 |
| PagI | TCATGA | 1 cut(s) | 249 |
| PciSI | GCTCTTC | 1 cut(s) | 186 |
| PdmI | GAANNNNTTC | 1 cut(s) | 171 |
| PfeI | GAWTC | 1 cut(s) | 172 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 31 |
| PkrI | GCNGC | 2 cut(s) | 83, 279 |
| PleI | GAGTC | 2 cut(s) | 142, 211 |
| PpsI | GAGTC | 2 cut(s) | 142, 211 |
| PshAI | GACNNNNGTC | 1 cut(s) | 289 |
| Psp6I | CCWGG | 1 cut(s) | 30 |
| PspGI | CCWGG | 1 cut(s) | 30 |
| PspN4I | GGNNCC | 2 cut(s) | 57, 66 |
| PsuI | RGATCY | 1 cut(s) | 361 |
| RsaI | GTAC | 1 cut(s) | 343 |
| RsaNI | GTAC | 1 cut(s) | 342 |
| SapI | GCTCTTC | 1 cut(s) | 186 |
| SaqAI | TTAA | 2 cut(s) | 48, 379 |
| SatI | GCNGC | 2 cut(s) | 82, 278 |
| Sau3AI | GATC | 3 cut(s) | 39, 361, 366 |
| SchI | GAGTC | 2 cut(s) | 143, 211 |
| ScrFI | CCNGG | 3 cut(s) | 32, 258, 259 |
| SduI | GDGCHC | 1 cut(s) | 60 |
| SetI | ASST | 3 cut(s) | 70, 249, 343 |
| SfaNI | GCATC | 1 cut(s) | 243 |
| SmaI | CCCGGG | 1 cut(s) | 259 |
| SphI | GCATGC | 1 cut(s) | 277 |
| Sse9I | AATT | 1 cut(s) | 299 |
| SsiI | CCGC | 1 cut(s) | 82 |
| SspMI | CTAG | 2 cut(s) | 222, 233 |
| StyD4I | CCNGG | 3 cut(s) | 30, 256, 257 |
| StyI | CCWWGG | 1 cut(s) | 60 |
| TasI | AATT | 1 cut(s) | 299 |
| TauI | GCSGC | 1 cut(s) | 84 |
| TfiI | GAWTC | 1 cut(s) | 172 |
| Tru1I | TTAA | 2 cut(s) | 48, 379 |
| Tru9I | TTAA | 2 cut(s) | 48, 379 |
| TscAI | CASTG | 3 cut(s) | 25, 196, 246 |
| TseI | GCWGC | 1 cut(s) | 277 |
| TspDTI | ATGAA | 1 cut(s) | 173 |
| TspMI | CCCGGG | 1 cut(s) | 257 |
| TspRI | CASTG | 3 cut(s) | 25, 196, 246 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 31 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 336 |
| XceI | RCATGY | 1 cut(s) | 277 |
| XmaI | CCCGGG | 1 cut(s) | 257 |
| XmnI | GAANNNNTTC | 1 cut(s) | 171 |
| XspI | CTAG | 2 cut(s) | 222, 233 |