ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 365 |
| AccBSI | CCGCTC | 1 cut(s) | 646 |
| AccII | CGCG | 1 cut(s) | 731 |
| AciI | CCGC | 4 cut(s) | 254, 565, 644, 731 |
| AclWI | GGATC | 1 cut(s) | 715 |
| AcsI | RAATTY | 1 cut(s) | 387 |
| AcuI | CTGAAG | 1 cut(s) | 63 |
| AcyI | GRCGYC | 1 cut(s) | 366 |
| AdeI | CACNNNGTG | 1 cut(s) | 733 |
| AfaI | GTAC | 1 cut(s) | 988 |
| AfeI | AGCGCT | 1 cut(s) | 993 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 703 |
| AgsI | TTSAA | 7 cut(s) | 161, 170, 235, 272, 386, 701, 826 |
| AjnI | CCWGG | 1 cut(s) | 920 |
| AloI | GAACNNNNNNTCC | 1 cut(s) | 32 |
| AluBI | AGCT | 7 cut(s) | 173, 185, 298, 311, 570, 762, 1012 |
| AluI | AGCT | 7 cut(s) | 173, 185, 298, 311, 570, 762, 1012 |
| Alw21I | GWGCWC | 2 cut(s) | 300, 729 |
| Alw26I | GTCTC | 5 cut(s) | 30, 393, 431, 532, 686 |
| AlwI | GGATC | 1 cut(s) | 715 |
| Ama87I | CYCGRG | 2 cut(s) | 809, 892 |
| Aor51HI | AGCGCT | 1 cut(s) | 993 |
| ApeKI | GCWGC | 9 cut(s) | 59, 84, 173, 553, 567, 570, 762, 817, 1000 |
| ApoI | RAATTY | 1 cut(s) | 387 |
| AspLEI | GCGC | 3 cut(s) | 368, 674, 994 |
| AspS9I | GGNCC | 1 cut(s) | 902 |
| AsuC2I | CCSGG | 3 cut(s) | 241, 810, 811 |
| AsuHPI | GGTGA | 2 cut(s) | 22, 745 |
| AvaI | CYCGRG | 2 cut(s) | 809, 892 |
| AvaII | GGWCC | 1 cut(s) | 902 |
| BanI | GGYRCC | 1 cut(s) | 365 |
| BanII | GRGCYC | 1 cut(s) | 300 |
| Bbv12I | GWGCWC | 2 cut(s) | 300, 729 |
| BbvCI | CCTCAGC | 1 cut(s) | 995 |
| BbvI | GCAGC | 9 cut(s) | 46, 96, 160, 540, 557, 579, 749, 804, 987 |
| BccI | CCATC | 6 cut(s) | 219, 286, 513, 526, 589, 827 |
| BceAI | ACGGC | 1 cut(s) | 458 |
| BciT130I | CCWGG | 1 cut(s) | 922 |
| BcnI | CCSGG | 3 cut(s) | 241, 810, 811 |
| BcoDI | GTCTC | 5 cut(s) | 30, 393, 431, 532, 686 |
| BfaI | CTAG | 1 cut(s) | 26 |
| BfmI | CTRYAG | 2 cut(s) | 763, 818 |
| BfoI | RGCGCY | 2 cut(s) | 369, 995 |
| BisI | GCNGC | 9 cut(s) | 60, 85, 174, 554, 568, 571, 763, 818, 1001 |
| BlpI | GCTNAGC | 2 cut(s) | 260, 1013 |
| BlsI | GCNGC | 9 cut(s) | 61, 86, 175, 555, 569, 572, 764, 819, 1002 |
| Bme1390I | CCNGG | 4 cut(s) | 241, 810, 811, 922 |
| Bme18I | GGWCC | 1 cut(s) | 902 |
| BmeT110I | CYCGRG | 2 cut(s) | 809, 892 |
| BmgT120I | GGNCC | 1 cut(s) | 902 |
| BmiI | GGNNCC | 1 cut(s) | 367 |
| BmrFI | CCNGG | 4 cut(s) | 241, 810, 811, 922 |
| BmsI | GCATC | 3 cut(s) | 460, 949, 1011 |
| Bpu10I | CCTNAGC | 2 cut(s) | 80, 995 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 260, 1013 |
| BpuEI | CTTGAG | 1 cut(s) | 632 |
| BpuMI | CCSGG | 3 cut(s) | 241, 810, 811 |
| BsaBI | GATNNNNATC | 1 cut(s) | 446 |
| BsaHI | GRCGYC | 1 cut(s) | 366 |
| BsaI | GGTCTC | 2 cut(s) | 532, 686 |
| BsaJI | CCNNGG | 3 cut(s) | 240, 474, 809 |
| BsaWI | WCCGGW | 1 cut(s) | 32 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 30, 960, 990 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 703 |
| Bse118I | RCCGGY | 1 cut(s) | 250 |
| Bse1I | ACTGG | 1 cut(s) | 594 |
| Bse8I | GATNNNNATC | 1 cut(s) | 446 |
| BseBI | CCWGG | 1 cut(s) | 922 |
| BseDI | CCNNGG | 3 cut(s) | 240, 474, 809 |
| BseGI | GGATG | 2 cut(s) | 581, 632 |
| BseJI | GATNNNNATC | 1 cut(s) | 446 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 703 |
| BseMII | CTCAG | 3 cut(s) | 99, 986, 1027 |
| BseNI | ACTGG | 1 cut(s) | 594 |
| BseXI | GCAGC | 9 cut(s) | 46, 96, 160, 540, 557, 579, 749, 804, 987 |
| BseYI | CCCAGC | 1 cut(s) | 980 |
| Bsh1236I | CGCG | 1 cut(s) | 731 |
| BshNI | GGYRCC | 1 cut(s) | 365 |
| BsiHKAI | GWGCWC | 2 cut(s) | 300, 729 |
| BsiHKCI | CYCGRG | 2 cut(s) | 809, 892 |
| BsiSI | CCGG | 5 cut(s) | 33, 240, 251, 660, 810 |
| BslFI | GGGAC | 1 cut(s) | 899 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 703 |
| BsmAI | GTCTC | 5 cut(s) | 30, 393, 431, 532, 686 |
| BsmBI | CGTCTC | 2 cut(s) | 30, 431 |
| BsmFI | GGGAC | 1 cut(s) | 899 |
| Bso31I | GGTCTC | 2 cut(s) | 532, 686 |
| BsoBI | CYCGRG | 2 cut(s) | 809, 892 |
| Bsp1286I | GDGCHC | 2 cut(s) | 300, 729 |
| Bsp143I | GATC | 2 cut(s) | 441, 707 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 260, 1013 |
| BspACI | CCGC | 4 cut(s) | 254, 565, 644, 731 |
| BspCNI | CTCAG | 3 cut(s) | 100, 987, 1026 |
| BspFNI | CGCG | 1 cut(s) | 731 |
| BspLI | GGNNCC | 1 cut(s) | 367 |
| BspMAI | CTGCAG | 2 cut(s) | 767, 822 |
| BspPI | GGATC | 1 cut(s) | 715 |
| BspT107I | GGYRCC | 1 cut(s) | 365 |
| BspTNI | GGTCTC | 2 cut(s) | 532, 686 |
| BsrBI | CCGCTC | 1 cut(s) | 646 |
| BsrFI | RCCGGY | 1 cut(s) | 250 |
| BsrI | ACTGG | 1 cut(s) | 594 |
| BssAI | RCCGGY | 1 cut(s) | 250 |
| BssECI | CCNNGG | 3 cut(s) | 240, 474, 809 |
| BssMI | GATC | 2 cut(s) | 441, 707 |
| BssNI | GRCGYC | 1 cut(s) | 366 |
| Bst2UI | CCWGG | 1 cut(s) | 922 |
| Bst4CI | ACNGT | 2 cut(s) | 101, 918 |
| Bst6I | CTCTTC | 2 cut(s) | 535, 696 |
| BstACI | GRCGYC | 1 cut(s) | 366 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 946 |
| BstC8I | GCNNGC | 5 cut(s) | 89, 455, 459, 729, 1005 |
| BstDEI | CTNAG | 7 cut(s) | 80, 108, 181, 191, 260, 995, 1013 |
| BstDSI | CCRYGG | 1 cut(s) | 474 |
| BstEII | GGTNACC | 1 cut(s) | 74 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 701 |
| BstF5I | GGATG | 2 cut(s) | 581, 632 |
| BstFNI | CGCG | 1 cut(s) | 731 |
| BstH2I | RGCGCY | 2 cut(s) | 369, 995 |
| BstHHI | GCGC | 3 cut(s) | 368, 674, 994 |
| BstKTI | GATC | 2 cut(s) | 444, 710 |
| BstMAI | GTCTC | 5 cut(s) | 30, 393, 431, 532, 686 |
| BstMBI | GATC | 2 cut(s) | 441, 707 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 170, 182, 251, 680, 762, 814, 946, 1000, 1009 |
| BstNI | CCWGG | 1 cut(s) | 922 |
| BstNSI | RCATGY | 1 cut(s) | 457 |
| BstPI | GGTNACC | 1 cut(s) | 74 |
| BstSCI | CCNGG | 4 cut(s) | 239, 808, 809, 920 |
| BstSFI | CTRYAG | 2 cut(s) | 763, 818 |
| BstUI | CGCG | 1 cut(s) | 731 |
| BstV1I | GCAGC | 9 cut(s) | 46, 96, 160, 540, 557, 579, 749, 804, 987 |
| BtgI | CCRYGG | 1 cut(s) | 474 |
| BtsCI | GGATG | 2 cut(s) | 581, 632 |
| Cac8I | GCNNGC | 5 cut(s) | 89, 455, 459, 729, 1005 |
| CfoI | GCGC | 3 cut(s) | 368, 674, 994 |
| Cfr10I | RCCGGY | 1 cut(s) | 250 |
| Cfr13I | GGNCC | 1 cut(s) | 902 |
| Cfr9I | CCCGGG | 1 cut(s) | 809 |
| CseI | GACGC | 1 cut(s) | 47 |
| Csp6I | GTAC | 1 cut(s) | 987 |
| CviAII | CATG | 4 cut(s) | 421, 454, 840, 1018 |
| CviQI | GTAC | 1 cut(s) | 987 |
| DdeI | CTNAG | 7 cut(s) | 80, 108, 181, 191, 260, 995, 1013 |
| DinI | GGCGCC | 1 cut(s) | 367 |
| DpnI | GATC | 2 cut(s) | 443, 709 |
| DpnII | GATC | 2 cut(s) | 441, 707 |
| DraIII | CACNNNGTG | 1 cut(s) | 733 |
| Eam1104I | CTCTTC | 2 cut(s) | 535, 696 |
| EarI | CTCTTC | 2 cut(s) | 535, 696 |
| Ecl136II | GAGCTC | 1 cut(s) | 298 |
| Eco24I | GRGCYC | 1 cut(s) | 300 |
| Eco31I | GGTCTC | 2 cut(s) | 532, 686 |
| Eco32I | GATATC | 1 cut(s) | 135 |
| Eco47I | GGWCC | 1 cut(s) | 902 |
| Eco47III | AGCGCT | 1 cut(s) | 993 |
| Eco53kI | GAGCTC | 1 cut(s) | 298 |
| Eco57I | CTGAAG | 1 cut(s) | 63 |
| Eco88I | CYCGRG | 2 cut(s) | 809, 892 |
| Eco91I | GGTNACC | 1 cut(s) | 74 |
| EcoICRI | GAGCTC | 1 cut(s) | 298 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 701 |
| EcoO65I | GGTNACC | 1 cut(s) | 74 |
| EcoRII | CCWGG | 1 cut(s) | 920 |
| EcoRV | GATATC | 1 cut(s) | 135 |
| EcoT38I | GRGCYC | 1 cut(s) | 300 |
| EgeI | GGCGCC | 1 cut(s) | 367 |
| EheI | GGCGCC | 1 cut(s) | 367 |
| Esp3I | CGTCTC | 2 cut(s) | 30, 431 |
| FaeI | CATG | 4 cut(s) | 424, 457, 843, 1021 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 450, 482 |
| FaqI | GGGAC | 1 cut(s) | 899 |
| FatI | CATG | 4 cut(s) | 420, 453, 839, 1017 |
| FauNDI | CATATG | 1 cut(s) | 752 |
| Fnu4HI | GCNGC | 9 cut(s) | 60, 85, 174, 554, 568, 571, 763, 818, 1001 |
| FokI | GGATG | 2 cut(s) | 568, 619 |
| FriOI | GRGCYC | 1 cut(s) | 300 |
| Fsp4HI | GCNGC | 9 cut(s) | 60, 85, 174, 554, 568, 571, 763, 818, 1001 |
| FspBI | CTAG | 1 cut(s) | 26 |
| GlaI | GCGC | 3 cut(s) | 367, 673, 993 |
| GluI | GCNGC | 9 cut(s) | 60, 85, 174, 554, 568, 571, 763, 818, 1001 |
| GsaI | CCCAGC | 1 cut(s) | 984 |
| HaeII | RGCGCY | 2 cut(s) | 369, 995 |
| HapII | CCGG | 5 cut(s) | 33, 240, 251, 660, 810 |
| HgaI | GACGC | 1 cut(s) | 47 |
| HhaI | GCGC | 3 cut(s) | 368, 674, 994 |
| Hin1I | GRCGYC | 1 cut(s) | 366 |
| Hin1II | CATG | 4 cut(s) | 424, 457, 843, 1021 |
| Hin6I | GCGC | 3 cut(s) | 366, 672, 992 |
| HinP1I | GCGC | 3 cut(s) | 366, 672, 992 |
| HinfI | GANTC | 3 cut(s) | 319, 640, 738 |
| HpaII | CCGG | 5 cut(s) | 33, 240, 251, 660, 810 |
| HphI | GGTGA | 2 cut(s) | 22, 745 |
| Hpy188I | TCNGA | 1 cut(s) | 906 |
| Hpy188III | TCNNGA | 1 cut(s) | 398 |
| HpyAV | CCTTC | 4 cut(s) | 278, 592, 791, 959 |
| HpyCH4III | ACNGT | 2 cut(s) | 101, 918 |
| HpyCH4V | TGCA | 9 cut(s) | 333, 457, 556, 608, 765, 820, 949, 962, 1024 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 170, 182, 251, 680, 762, 814, 946, 1000, 1009 |
| HpyF3I | CTNAG | 7 cut(s) | 80, 108, 181, 191, 260, 995, 1013 |
| Hsp92I | GRCGYC | 1 cut(s) | 366 |
| Hsp92II | CATG | 4 cut(s) | 424, 457, 843, 1021 |
| HspAI | GCGC | 3 cut(s) | 366, 672, 992 |
| KasI | GGCGCC | 1 cut(s) | 365 |
| Kzo9I | GATC | 2 cut(s) | 441, 707 |
| LmnI | GCTCC | 2 cut(s) | 21, 295 |
| Lsp1109I | GCAGC | 9 cut(s) | 46, 96, 160, 540, 557, 579, 749, 804, 987 |
| LweI | GCATC | 3 cut(s) | 460, 949, 1011 |
| MaeI | CTAG | 1 cut(s) | 26 |
| MaeIII | GTNAC | 2 cut(s) | 28, 74 |
| MalI | GATC | 2 cut(s) | 443, 709 |
| MbiI | CCGCTC | 1 cut(s) | 646 |
| MboI | GATC | 2 cut(s) | 441, 707 |
| MboII | GAAGA | 3 cut(s) | 522, 621, 713 |
| MfeI | CAATTG | 2 cut(s) | 351, 675 |
| MhlI | GDGCHC | 2 cut(s) | 300, 729 |
| MluCI | AATT | 5 cut(s) | 351, 387, 675, 866, 954 |
| Mly113I | GGCGCC | 1 cut(s) | 366 |
| MspA1I | CMGCKG | 1 cut(s) | 570 |
| MspI | CCGG | 5 cut(s) | 33, 240, 251, 660, 810 |
| MspR9I | CCNGG | 4 cut(s) | 241, 810, 811, 922 |
| MunI | CAATTG | 2 cut(s) | 351, 675 |
| MvaI | CCWGG | 1 cut(s) | 922 |
| MvnI | CGCG | 1 cut(s) | 731 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 170, 182, 251, 680, 762, 814, 946, 1000, 1009 |
| NarI | GGCGCC | 1 cut(s) | 366 |
| NciI | CCSGG | 3 cut(s) | 241, 810, 811 |
| NdeI | CATATG | 1 cut(s) | 752 |
| NdeII | GATC | 2 cut(s) | 441, 707 |
| NlaIII | CATG | 4 cut(s) | 424, 457, 843, 1021 |
| NlaIV | GGNNCC | 1 cut(s) | 367 |
| NmuCI | GTSAC | 1 cut(s) | 28 |
| NspI | RCATGY | 1 cut(s) | 457 |
| PaeI | GCATGC | 1 cut(s) | 457 |
| PaeR7I | CTCGAG | 1 cut(s) | 892 |
| PfeI | GAWTC | 3 cut(s) | 319, 640, 738 |
| PfoI | TCCNGGA | 1 cut(s) | 920 |
| PkrI | GCNGC | 9 cut(s) | 61, 86, 175, 555, 569, 572, 764, 819, 1002 |
| PluTI | GGCGCC | 1 cut(s) | 369 |
| Psp124BI | GAGCTC | 1 cut(s) | 300 |
| Psp6I | CCWGG | 1 cut(s) | 920 |
| PspEI | GGTNACC | 1 cut(s) | 74 |
| PspFI | CCCAGC | 1 cut(s) | 980 |
| PspGI | CCWGG | 1 cut(s) | 920 |
| PspN4I | GGNNCC | 1 cut(s) | 367 |
| PspPI | GGNCC | 1 cut(s) | 902 |
| PspXI | VCTCGAGB | 1 cut(s) | 892 |
| PstI | CTGCAG | 2 cut(s) | 767, 822 |
| PvuII | CAGCTG | 1 cut(s) | 570 |
| RsaI | GTAC | 1 cut(s) | 988 |
| RsaNI | GTAC | 1 cut(s) | 987 |
| SacI | GAGCTC | 1 cut(s) | 300 |
| SatI | GCNGC | 9 cut(s) | 60, 85, 174, 554, 568, 571, 763, 818, 1001 |
| Sau3AI | GATC | 2 cut(s) | 441, 707 |
| Sau96I | GGNCC | 1 cut(s) | 902 |
| ScrFI | CCNGG | 4 cut(s) | 241, 810, 811, 922 |
| SduI | GDGCHC | 2 cut(s) | 300, 729 |
| SfaNI | GCATC | 3 cut(s) | 460, 949, 1011 |
| SfcI | CTRYAG | 2 cut(s) | 763, 818 |
| SfoI | GGCGCC | 1 cut(s) | 367 |
| Sfr274I | CTCGAG | 1 cut(s) | 892 |
| SinI | GGWCC | 1 cut(s) | 902 |
| SlaI | CTCGAG | 1 cut(s) | 892 |
| SmaI | CCCGGG | 1 cut(s) | 811 |
| SmlI | CTYRAG | 2 cut(s) | 647, 892 |
| SmoI | CTYRAG | 2 cut(s) | 647, 892 |
| SphI | GCATGC | 1 cut(s) | 457 |
| Sse9I | AATT | 5 cut(s) | 351, 387, 675, 866, 954 |
| SsiI | CCGC | 4 cut(s) | 254, 565, 644, 731 |
| SspDI | GGCGCC | 1 cut(s) | 365 |
| SspMI | CTAG | 1 cut(s) | 26 |
| SstI | GAGCTC | 1 cut(s) | 300 |
| StyD4I | CCNGG | 4 cut(s) | 239, 808, 809, 920 |
| TaaI | ACNGT | 2 cut(s) | 101, 918 |
| TaqI | TCGA | 2 cut(s) | 397, 893 |
| TasI | AATT | 5 cut(s) | 351, 387, 675, 866, 954 |
| TatI | WGTACW | 1 cut(s) | 986 |
| TfiI | GAWTC | 3 cut(s) | 319, 640, 738 |
| TseFI | GTSAC | 1 cut(s) | 28 |
| TseI | GCWGC | 9 cut(s) | 59, 84, 173, 553, 567, 570, 762, 817, 1000 |
| Tsp45I | GTSAC | 1 cut(s) | 28 |
| TspDTI | ATGAA | 4 cut(s) | 134, 437, 621, 739 |
| TspGWI | ACGGA | 1 cut(s) | 792 |
| TspMI | CCCGGG | 1 cut(s) | 809 |
| VpaK11BI | GGWCC | 1 cut(s) | 902 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 701 |
| XapI | RAATTY | 1 cut(s) | 387 |
| XceI | RCATGY | 1 cut(s) | 457 |
| XhoI | CTCGAG | 1 cut(s) | 892 |
| XmaI | CCCGGG | 1 cut(s) | 809 |
| XspI | CTAG | 1 cut(s) | 26 |