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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 805 |
| AccB1I | GGYRCC | 1 cut(s) | 805 |
| AccII | CGCG | 1 cut(s) | 26 |
| AccIII | TCCGGA | 1 cut(s) | 790 |
| AciI | CCGC | 4 cut(s) | 26, 125, 132, 695 |
| AclWI | GGATC | 1 cut(s) | 199 |
| AcoI | YGGCCR | 2 cut(s) | 122, 324 |
| AcsI | RAATTY | 2 cut(s) | 608, 975 |
| AcvI | CACGTG | 1 cut(s) | 781 |
| AfaI | GTAC | 2 cut(s) | 807, 829 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 193, 333, 628 |
| AgsI | TTSAA | 5 cut(s) | 407, 578, 607, 692, 866 |
| AjnI | CCWGG | 1 cut(s) | 612 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 399, 431, 587, 619 |
| AluBI | AGCT | 8 cut(s) | 44, 272, 391, 509, 553, 573, 769, 924 |
| AluI | AGCT | 8 cut(s) | 44, 272, 391, 509, 553, 573, 769, 924 |
| Alw21I | GWGCWC | 2 cut(s) | 555, 759 |
| Alw26I | GTCTC | 1 cut(s) | 208 |
| AlwI | GGATC | 1 cut(s) | 199 |
| Ama87I | CYCGRG | 1 cut(s) | 239 |
| Aor13HI | TCCGGA | 1 cut(s) | 790 |
| AoxI | GGCC | 5 cut(s) | 15, 27, 122, 324, 393 |
| ApeKI | GCWGC | 3 cut(s) | 86, 272, 905 |
| ApoI | RAATTY | 2 cut(s) | 608, 975 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 153, 185, 452, 484 |
| Asp718I | GGTACC | 1 cut(s) | 805 |
| AspS9I | GGNCC | 3 cut(s) | 184, 394, 560 |
| AsuC2I | CCSGG | 1 cut(s) | 398 |
| AsuNHI | GCTAGC | 1 cut(s) | 127 |
| AvaI | CYCGRG | 1 cut(s) | 239 |
| AvaII | GGWCC | 2 cut(s) | 184, 560 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 797, 830 |
| BanI | GGYRCC | 1 cut(s) | 805 |
| BanII | GRGCYC | 1 cut(s) | 555 |
| BauI | CACGAG | 1 cut(s) | 504 |
| BbrPI | CACGTG | 1 cut(s) | 781 |
| BbsI | GAAGAC | 2 cut(s) | 550, 862 |
| Bbv12I | GWGCWC | 2 cut(s) | 555, 759 |
| BbvI | GCAGC | 3 cut(s) | 73, 259, 892 |
| BceAI | ACGGC | 2 cut(s) | 30, 339 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 140, 174 |
| BciT130I | CCWGG | 1 cut(s) | 614 |
| BciVI | GTATCC | 1 cut(s) | 658 |
| BcnI | CCSGG | 1 cut(s) | 398 |
| BcoDI | GTCTC | 1 cut(s) | 208 |
| BfaI | CTAG | 5 cut(s) | 41, 128, 188, 948, 954 |
| BfuI | GTATCC | 1 cut(s) | 658 |
| BisI | GCNGC | 6 cut(s) | 27, 87, 125, 132, 273, 906 |
| BlsI | GCNGC | 6 cut(s) | 28, 88, 126, 133, 274, 907 |
| Bme1390I | CCNGG | 2 cut(s) | 398, 614 |
| Bme18I | GGWCC | 2 cut(s) | 184, 560 |
| BmeT110I | CYCGRG | 1 cut(s) | 239 |
| BmgT120I | GGNCC | 3 cut(s) | 184, 394, 560 |
| BmiI | GGNNCC | 3 cut(s) | 185, 396, 807 |
| BmrFI | CCNGG | 2 cut(s) | 398, 614 |
| BmsI | GCATC | 1 cut(s) | 490 |
| BmtI | GCTAGC | 1 cut(s) | 131 |
| BoxI | GACNNNNGTC | 1 cut(s) | 629 |
| BpiI | GAAGAC | 2 cut(s) | 550, 862 |
| BpmI | CTGGAG | 1 cut(s) | 569 |
| Bpu10I | CCTNAGC | 1 cut(s) | 765 |
| BpuEI | CTTGAG | 1 cut(s) | 734 |
| BpuMI | CCSGG | 1 cut(s) | 398 |
| BsaAI | YACGTR | 2 cut(s) | 650, 781 |
| BsaI | GGTCTC | 1 cut(s) | 208 |
| BsaJI | CCNNGG | 3 cut(s) | 396, 515, 613 |
| BsaWI | WCCGGW | 3 cut(s) | 217, 628, 790 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 928, 958 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 193, 333, 628 |
| Bse1I | ACTGG | 2 cut(s) | 282, 552 |
| BseAI | TCCGGA | 1 cut(s) | 790 |
| BseBI | CCWGG | 1 cut(s) | 614 |
| BseDI | CCNNGG | 3 cut(s) | 396, 515, 613 |
| BseGI | GGATG | 2 cut(s) | 10, 529 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 193, 333, 628 |
| BseMII | CTCAG | 2 cut(s) | 756, 807 |
| BseNI | ACTGG | 2 cut(s) | 282, 552 |
| BseX3I | CGGCCG | 1 cut(s) | 122 |
| BseXI | GCAGC | 3 cut(s) | 73, 259, 892 |
| BsgI | GTGCAG | 1 cut(s) | 72 |
| Bsh1236I | CGCG | 1 cut(s) | 26 |
| Bsh1285I | CGRYCG | 1 cut(s) | 125 |
| BshFI | GGCC | 5 cut(s) | 17, 29, 124, 326, 395 |
| BshNI | GGYRCC | 1 cut(s) | 805 |
| BsiEI | CGRYCG | 1 cut(s) | 125 |
| BsiHKAI | GWGCWC | 2 cut(s) | 555, 759 |
| BsiHKCI | CYCGRG | 1 cut(s) | 239 |
| BsiSI | CCGG | 4 cut(s) | 218, 398, 629, 791 |
| BslFI | GGGAC | 2 cut(s) | 668, 721 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 193, 333, 628 |
| BsmAI | GTCTC | 1 cut(s) | 208 |
| BsmFI | GGGAC | 2 cut(s) | 668, 721 |
| BsmI | GAATGC | 1 cut(s) | 786 |
| BsnI | GGCC | 5 cut(s) | 17, 29, 124, 326, 395 |
| Bso31I | GGTCTC | 1 cut(s) | 208 |
| BsoBI | CYCGRG | 1 cut(s) | 239 |
| Bsp1286I | GDGCHC | 2 cut(s) | 555, 759 |
| Bsp13I | TCCGGA | 1 cut(s) | 790 |
| Bsp143I | GATC | 5 cut(s) | 61, 71, 204, 231, 243 |
| BspACI | CCGC | 4 cut(s) | 26, 125, 132, 695 |
| BspANI | GGCC | 5 cut(s) | 17, 29, 124, 326, 395 |
| BspCNI | CTCAG | 2 cut(s) | 757, 808 |
| BspEI | TCCGGA | 1 cut(s) | 790 |
| BspFNI | CGCG | 1 cut(s) | 26 |
| BspLI | GGNNCC | 3 cut(s) | 185, 396, 807 |
| BspOI | GCTAGC | 1 cut(s) | 131 |
| BspPI | GGATC | 1 cut(s) | 199 |
| BspT107I | GGYRCC | 1 cut(s) | 805 |
| BspTNI | GGTCTC | 1 cut(s) | 208 |
| BsrI | ACTGG | 2 cut(s) | 282, 552 |
| BssECI | CCNNGG | 3 cut(s) | 396, 515, 613 |
| BssMI | GATC | 5 cut(s) | 61, 71, 204, 231, 243 |
| BssSI | CACGAG | 1 cut(s) | 504 |
| BssT1I | CCWWGG | 1 cut(s) | 515 |
| Bst2BI | CACGAG | 1 cut(s) | 504 |
| Bst2UI | CCWGG | 1 cut(s) | 614 |
| Bst6I | CTCTTC | 3 cut(s) | 88, 374, 405 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 500 |
| BstBAI | YACGTR | 2 cut(s) | 650, 781 |
| BstC8I | GCNNGC | 7 cut(s) | 101, 105, 117, 129, 141, 393, 922 |
| BstDEI | CTNAG | 3 cut(s) | 765, 810, 816 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 191 |
| BstF5I | GGATG | 2 cut(s) | 10, 529 |
| BstFNI | CGCG | 1 cut(s) | 26 |
| BstKTI | GATC | 5 cut(s) | 64, 74, 207, 234, 246 |
| BstMAI | GTCTC | 1 cut(s) | 208 |
| BstMBI | GATC | 5 cut(s) | 61, 71, 204, 231, 243 |
| BstMCI | CGRYCG | 1 cut(s) | 125 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 23, 35, 83, 121, 140, 278, 500, 830, 926 |
| BstNI | CCWGG | 1 cut(s) | 614 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 629 |
| BstSCI | CCNGG | 2 cut(s) | 396, 612 |
| BstUI | CGCG | 1 cut(s) | 26 |
| BstV1I | GCAGC | 3 cut(s) | 73, 259, 892 |
| BstV2I | GAAGAC | 2 cut(s) | 550, 862 |
| BstX2I | RGATCY | 1 cut(s) | 204 |
| BstYI | RGATCY | 1 cut(s) | 204 |
| BstZI | CGGCCG | 1 cut(s) | 122 |
| BsuI | GTATCC | 1 cut(s) | 658 |
| BsuRI | GGCC | 5 cut(s) | 17, 29, 124, 326, 395 |
| BtsCI | GGATG | 2 cut(s) | 10, 529 |
| BtsI | GCAGTG | 1 cut(s) | 146 |
| BtsIMutI | CAGTG | 1 cut(s) | 146 |
| Cac8I | GCNNGC | 7 cut(s) | 101, 105, 117, 129, 141, 393, 922 |
| Cfr13I | GGNCC | 3 cut(s) | 184, 394, 560 |
| CseI | GACGC | 1 cut(s) | 544 |
| Csp6I | GTAC | 2 cut(s) | 806, 828 |
| CviAII | CATG | 1 cut(s) | 350 |
| CviQI | GTAC | 2 cut(s) | 806, 828 |
| DdeI | CTNAG | 3 cut(s) | 765, 810, 816 |
| DpnI | GATC | 5 cut(s) | 63, 73, 206, 233, 245 |
| DpnII | GATC | 5 cut(s) | 61, 71, 204, 231, 243 |
| EaeI | YGGCCR | 2 cut(s) | 122, 324 |
| EagI | CGGCCG | 1 cut(s) | 122 |
| Eam1104I | CTCTTC | 3 cut(s) | 88, 374, 405 |
| EarI | CTCTTC | 3 cut(s) | 88, 374, 405 |
| Ecl136II | GAGCTC | 1 cut(s) | 553 |
| EclXI | CGGCCG | 1 cut(s) | 122 |
| Eco130I | CCWWGG | 1 cut(s) | 515 |
| Eco24I | GRGCYC | 1 cut(s) | 555 |
| Eco31I | GGTCTC | 1 cut(s) | 208 |
| Eco47I | GGWCC | 2 cut(s) | 184, 560 |
| Eco52I | CGGCCG | 1 cut(s) | 122 |
| Eco53kI | GAGCTC | 1 cut(s) | 553 |
| Eco72I | CACGTG | 1 cut(s) | 781 |
| Eco88I | CYCGRG | 1 cut(s) | 239 |
| EcoICRI | GAGCTC | 1 cut(s) | 553 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 191 |
| EcoO109I | RGGNCCY | 1 cut(s) | 184 |
| EcoRII | CCWGG | 1 cut(s) | 612 |
| EcoT14I | CCWWGG | 1 cut(s) | 515 |
| EcoT38I | GRGCYC | 1 cut(s) | 555 |
| ErhI | CCWWGG | 1 cut(s) | 515 |
| FaeI | CATG | 1 cut(s) | 353 |
| FaiI | YATR | 9 cut(s) | 109, 260, 269, 351, 557, 569, 591, 803, 894 |
| FaqI | GGGAC | 2 cut(s) | 668, 721 |
| FatI | CATG | 1 cut(s) | 349 |
| Fnu4HI | GCNGC | 6 cut(s) | 27, 87, 125, 132, 273, 906 |
| FokI | GGATG | 2 cut(s) | 17, 536 |
| FriOI | GRGCYC | 1 cut(s) | 555 |
| Fsp4HI | GCNGC | 6 cut(s) | 27, 87, 125, 132, 273, 906 |
| FspBI | CTAG | 5 cut(s) | 41, 128, 188, 948, 954 |
| GluI | GCNGC | 6 cut(s) | 27, 87, 125, 132, 273, 906 |
| GsuI | CTGGAG | 1 cut(s) | 569 |
| HaeIII | GGCC | 5 cut(s) | 17, 29, 124, 326, 395 |
| HapII | CCGG | 4 cut(s) | 218, 398, 629, 791 |
| HgaI | GACGC | 1 cut(s) | 544 |
| Hin1II | CATG | 1 cut(s) | 353 |
| HinfI | GANTC | 3 cut(s) | 165, 618, 625 |
| HpaII | CCGG | 4 cut(s) | 218, 398, 629, 791 |
| Hpy166II | GTNNAC | 2 cut(s) | 529, 774 |
| Hpy188I | TCNGA | 2 cut(s) | 375, 817 |
| Hpy188III | TCNNGA | 5 cut(s) | 69, 241, 622, 791, 863 |
| Hpy8I | GTNNAC | 2 cut(s) | 529, 774 |
| Hpy99I | CGWCG | 3 cut(s) | 165, 177, 538 |
| HpyAV | CCTTC | 3 cut(s) | 31, 167, 892 |
| HpyCH4IV | ACGT | 3 cut(s) | 649, 671, 780 |
| HpyCH4V | TGCA | 5 cut(s) | 89, 151, 494, 503, 647 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 23, 35, 83, 121, 140, 278, 500, 830, 926 |
| HpyF3I | CTNAG | 3 cut(s) | 765, 810, 816 |
| HpySE526I | ACGT | 3 cut(s) | 649, 671, 780 |
| Hsp92II | CATG | 1 cut(s) | 353 |
| Kpn2I | TCCGGA | 1 cut(s) | 790 |
| KpnI | GGTACC | 1 cut(s) | 809 |
| Kzo9I | GATC | 5 cut(s) | 61, 71, 204, 231, 243 |
| LmnI | GCTCC | 3 cut(s) | 148, 550, 762 |
| Lsp1109I | GCAGC | 3 cut(s) | 73, 259, 892 |
| LweI | GCATC | 1 cut(s) | 490 |
| MaeI | CTAG | 5 cut(s) | 41, 128, 188, 948, 954 |
| MaeII | ACGT | 3 cut(s) | 649, 671, 780 |
| MaeIII | GTNAC | 3 cut(s) | 10, 449, 713 |
| MalI | GATC | 5 cut(s) | 63, 73, 206, 233, 245 |
| MboI | GATC | 5 cut(s) | 61, 71, 204, 231, 243 |
| MboII | GAAGA | 7 cut(s) | 105, 391, 415, 419, 422, 555, 867 |
| MflI | RGATCY | 1 cut(s) | 204 |
| MhlI | GDGCHC | 2 cut(s) | 555, 759 |
| MluCI | AATT | 4 cut(s) | 296, 330, 608, 975 |
| MlyI | GAGTC | 1 cut(s) | 619 |
| MroI | TCCGGA | 1 cut(s) | 790 |
| MseI | TTAA | 1 cut(s) | 201 |
| MspI | CCGG | 4 cut(s) | 218, 398, 629, 791 |
| MspR9I | CCNGG | 2 cut(s) | 398, 614 |
| Mva1269I | GAATGC | 1 cut(s) | 786 |
| MvaI | CCWGG | 1 cut(s) | 614 |
| MvnI | CGCG | 1 cut(s) | 26 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 23, 35, 83, 121, 140, 278, 500, 830, 926 |
| NciI | CCSGG | 1 cut(s) | 398 |
| NdeII | GATC | 5 cut(s) | 61, 71, 204, 231, 243 |
| NheI | GCTAGC | 1 cut(s) | 127 |
| NlaIII | CATG | 1 cut(s) | 353 |
| NlaIV | GGNNCC | 3 cut(s) | 185, 396, 807 |
| NmeAIII | GCCGAG | 1 cut(s) | 100 |
| NmuCI | GTSAC | 3 cut(s) | 10, 449, 713 |
| PaeR7I | CTCGAG | 1 cut(s) | 239 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 169 |
| PctI | GAATGC | 1 cut(s) | 786 |
| PfeI | GAWTC | 2 cut(s) | 165, 618 |
| PkrI | GCNGC | 6 cut(s) | 28, 88, 126, 133, 274, 907 |
| PleI | GAGTC | 1 cut(s) | 619 |
| PmaCI | CACGTG | 1 cut(s) | 781 |
| PmlI | CACGTG | 1 cut(s) | 781 |
| PpsI | GAGTC | 1 cut(s) | 619 |
| Ppu21I | YACGTR | 2 cut(s) | 650, 781 |
| PpuMI | RGGWCCY | 1 cut(s) | 184 |
| PshAI | GACNNNNGTC | 1 cut(s) | 629 |
| Psp124BI | GAGCTC | 1 cut(s) | 555 |
| Psp5II | RGGWCCY | 1 cut(s) | 184 |
| Psp6I | CCWGG | 1 cut(s) | 612 |
| PspCI | CACGTG | 1 cut(s) | 781 |
| PspGI | CCWGG | 1 cut(s) | 612 |
| PspN4I | GGNNCC | 3 cut(s) | 185, 396, 807 |
| PspPI | GGNCC | 3 cut(s) | 184, 394, 560 |
| PspPPI | RGGWCCY | 1 cut(s) | 184 |
| PsuI | RGATCY | 1 cut(s) | 204 |
| RsaI | GTAC | 2 cut(s) | 807, 829 |
| RsaNI | GTAC | 2 cut(s) | 806, 828 |
| SacI | GAGCTC | 1 cut(s) | 555 |
| SaqAI | TTAA | 1 cut(s) | 201 |
| SatI | GCNGC | 6 cut(s) | 27, 87, 125, 132, 273, 906 |
| Sau3AI | GATC | 5 cut(s) | 61, 71, 204, 231, 243 |
| Sau96I | GGNCC | 3 cut(s) | 184, 394, 560 |
| SchI | GAGTC | 1 cut(s) | 619 |
| ScrFI | CCNGG | 2 cut(s) | 398, 614 |
| SduI | GDGCHC | 2 cut(s) | 555, 759 |
| SfaNI | GCATC | 1 cut(s) | 490 |
| Sfr274I | CTCGAG | 1 cut(s) | 239 |
| SinI | GGWCC | 2 cut(s) | 184, 560 |
| SlaI | CTCGAG | 1 cut(s) | 239 |
| SmlI | CTYRAG | 2 cut(s) | 239, 749 |
| SmoI | CTYRAG | 2 cut(s) | 239, 749 |
| Sse9I | AATT | 4 cut(s) | 296, 330, 608, 975 |
| SsiI | CCGC | 4 cut(s) | 26, 125, 132, 695 |
| SspMI | CTAG | 5 cut(s) | 41, 128, 188, 948, 954 |
| SstI | GAGCTC | 1 cut(s) | 555 |
| StyD4I | CCNGG | 2 cut(s) | 396, 612 |
| StyI | CCWWGG | 1 cut(s) | 515 |
| TaiI | ACGT | 3 cut(s) | 652, 674, 783 |
| TaqI | TCGA | 3 cut(s) | 160, 240, 246 |
| TasI | AATT | 4 cut(s) | 296, 330, 608, 975 |
| TauI | GCSGC | 3 cut(s) | 29, 127, 134 |
| TfiI | GAWTC | 2 cut(s) | 165, 618 |
| Tru1I | TTAA | 1 cut(s) | 201 |
| Tru9I | TTAA | 1 cut(s) | 201 |
| TscAI | CASTG | 1 cut(s) | 153 |
| TseFI | GTSAC | 3 cut(s) | 10, 449, 713 |
| TseI | GCWGC | 3 cut(s) | 86, 272, 905 |
| Tsp45I | GTSAC | 3 cut(s) | 10, 449, 713 |
| TspDTI | ATGAA | 1 cut(s) | 392 |
| TspRI | CASTG | 1 cut(s) | 153 |
| VpaK11BI | GGWCC | 2 cut(s) | 184, 560 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 191 |
| XapI | RAATTY | 2 cut(s) | 608, 975 |
| XhoI | CTCGAG | 1 cut(s) | 239 |
| XspI | CTAG | 5 cut(s) | 41, 128, 188, 948, 954 |