Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Lyase_aromatic | PF00221 | 51 - 522 | 2e-153 | Aromatic amino acid lyase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 154 |
| Acc36I | ACCTGC | 2 cut(s) | 154, 1920 |
| AccB1I | GGYRCC | 1 cut(s) | 557 |
| AccI | GTMKAC | 2 cut(s) | 45, 1479 |
| AccII | CGCG | 4 cut(s) | 201, 569, 1346, 1680 |
| AciI | CCGC | 9 cut(s) | 18, 59, 62, 170, 223, 426, 437, 567, 1678 |
| AclWI | GGATC | 4 cut(s) | 461, 1886, 1925, 2054 |
| AcoI | YGGCCR | 3 cut(s) | 438, 901, 1593 |
| AcsI | RAATTY | 1 cut(s) | 515 |
| AcuI | CTGAAG | 5 cut(s) | 332, 858, 908, 1355, 1862 |
| AfaI | GTAC | 4 cut(s) | 277, 1183, 1685, 1946 |
| AjnI | CCWGG | 4 cut(s) | 468, 898, 1874, 2005 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 567, 599, 1310, 1342 |
| Alw21I | GWGCWC | 1 cut(s) | 933 |
| Alw26I | GTCTC | 4 cut(s) | 40, 570, 647, 1135 |
| AlwI | GGATC | 4 cut(s) | 461, 1886, 1925, 2054 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 249 |
| Ama87I | CYCGRG | 1 cut(s) | 1132 |
| ApeKI | GCWGC | 8 cut(s) | 390, 393, 914, 917, 1070, 1302, 1750, 1823 |
| ApoI | RAATTY | 1 cut(s) | 515 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 345, 769 |
| AspLEI | GCGC | 4 cut(s) | 7, 201, 1750, 2045 |
| AspS9I | GGNCC | 6 cut(s) | 621, 641, 985, 1046, 1602, 1675 |
| AsuC2I | CCSGG | 2 cut(s) | 301, 2047 |
| AsuII | TTCGAA | 3 cut(s) | 179, 994, 1830 |
| AvaI | CYCGRG | 1 cut(s) | 1132 |
| AvaII | GGWCC | 3 cut(s) | 985, 1602, 1675 |
| BaeGI | GKGCMC | 1 cut(s) | 560 |
| BalI | TGGCCA | 2 cut(s) | 903, 1595 |
| BanI | GGYRCC | 1 cut(s) | 557 |
| BbsI | GAAGAC | 2 cut(s) | 1622, 1706 |
| Bbv12I | GWGCWC | 1 cut(s) | 933 |
| BbvCI | CCTCAGC | 1 cut(s) | 669 |
| BbvI | GCAGC | 8 cut(s) | 402, 405, 901, 929, 1082, 1314, 1762, 1810 |
| BccI | CCATC | 6 cut(s) | 250, 569, 935, 1342, 1628, 1814 |
| BceAI | ACGGC | 2 cut(s) | 541, 1193 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 18, 52 |
| BciT130I | CCWGG | 4 cut(s) | 470, 900, 1876, 2007 |
| BclI | TGATCA | 2 cut(s) | 360, 1062 |
| BcnI | CCSGG | 2 cut(s) | 301, 2047 |
| BcoDI | GTCTC | 4 cut(s) | 40, 570, 647, 1135 |
| BfaI | CTAG | 6 cut(s) | 446, 800, 1043, 1458, 1511, 1754 |
| BfmI | CTRYAG | 1 cut(s) | 915 |
| BfoI | RGCGCY | 1 cut(s) | 2046 |
| BfuAI | ACCTGC | 2 cut(s) | 154, 1920 |
| BlpI | GCTNAGC | 1 cut(s) | 1413 |
| Bme1390I | CCNGG | 6 cut(s) | 301, 470, 900, 1876, 2007, 2047 |
| Bme18I | GGWCC | 3 cut(s) | 985, 1602, 1675 |
| BmeT110I | CYCGRG | 1 cut(s) | 1132 |
| BmgT120I | GGNCC | 6 cut(s) | 621, 641, 985, 1046, 1602, 1675 |
| BmiI | GGNNCC | 7 cut(s) | 559, 585, 975, 987, 1048, 1171, 1604 |
| BmrFI | CCNGG | 6 cut(s) | 301, 470, 900, 1876, 2007, 2047 |
| BmrI | ACTGGG | 4 cut(s) | 146, 237, 259, 1976 |
| BmsI | GCATC | 5 cut(s) | 38, 492, 1361, 1722, 1753 |
| BmuI | ACTGGG | 4 cut(s) | 146, 237, 259, 1976 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1710 |
| BpiI | GAAGAC | 2 cut(s) | 1622, 1706 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1085, 1117 |
| BpmI | CTGGAG | 2 cut(s) | 452, 2090 |
| Bpu10I | CCTNAGC | 2 cut(s) | 669, 1002 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1413 |
| Bpu14I | TTCGAA | 3 cut(s) | 179, 994, 1830 |
| BpuEI | CTTGAG | 1 cut(s) | 56 |
| BpuMI | CCSGG | 2 cut(s) | 301, 2047 |
| Bsa29I | ATCGAT | 1 cut(s) | 1125 |
| BsaI | GGTCTC | 1 cut(s) | 647 |
| BsaJI | CCNNGG | 7 cut(s) | 469, 720, 898, 1165, 1188, 1440, 1470 |
| BsaWI | WCCGGW | 2 cut(s) | 117, 321 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 567, 597, 1676, 1706 |
| Bse118I | RCCGGY | 1 cut(s) | 124 |
| Bse1I | ACTGG | 6 cut(s) | 53, 141, 232, 254, 1971, 1990 |
| Bse3DI | GCAATG | 1 cut(s) | 597 |
| BseBI | CCWGG | 4 cut(s) | 470, 900, 1876, 2007 |
| BseCI | ATCGAT | 1 cut(s) | 1125 |
| BseDI | CCNNGG | 7 cut(s) | 469, 720, 898, 1165, 1188, 1440, 1470 |
| BseGI | GGATG | 2 cut(s) | 1466, 1499 |
| BseMI | GCAATG | 1 cut(s) | 597 |
| BseMII | CTCAG | 8 cut(s) | 492, 660, 1239, 1308, 1356, 1404, 1552, 1641 |
| BseNI | ACTGG | 6 cut(s) | 53, 141, 232, 254, 1971, 1990 |
| BseRI | GAGGAG | 4 cut(s) | 230, 455, 1565, 2096 |
| BseSI | GKGCMC | 1 cut(s) | 560 |
| BseXI | GCAGC | 8 cut(s) | 402, 405, 901, 929, 1082, 1314, 1762, 1810 |
| BseYI | CCCAGC | 2 cut(s) | 602, 664 |
| BsgI | GTGCAG | 1 cut(s) | 1356 |
| Bsh1236I | CGCG | 4 cut(s) | 201, 569, 1346, 1680 |
| BshNI | GGYRCC | 1 cut(s) | 557 |
| BshVI | ATCGAT | 1 cut(s) | 1125 |
| BsiHKAI | GWGCWC | 1 cut(s) | 933 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1132 |
| BsiSI | CCGG | 7 cut(s) | 118, 125, 300, 322, 378, 857, 2046 |
| BslFI | GGGAC | 3 cut(s) | 1151, 1458, 1984 |
| BsmAI | GTCTC | 4 cut(s) | 40, 570, 647, 1135 |
| BsmFI | GGGAC | 3 cut(s) | 1151, 1458, 1984 |
| BsmI | GAATGC | 2 cut(s) | 379, 1931 |
| Bso31I | GGTCTC | 1 cut(s) | 647 |
| BsoBI | CYCGRG | 1 cut(s) | 1132 |
| Bsp119I | TTCGAA | 3 cut(s) | 179, 994, 1830 |
| Bsp1286I | GDGCHC | 2 cut(s) | 560, 933 |
| Bsp1407I | TGTACA | 1 cut(s) | 1944 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1413 |
| Bsp19I | CCATGG | 1 cut(s) | 1188 |
| Bsp68I | TCGCGA | 1 cut(s) | 1346 |
| BspACI | CCGC | 9 cut(s) | 18, 59, 62, 170, 223, 426, 437, 567, 1678 |
| BspCNI | CTCAG | 8 cut(s) | 491, 661, 1240, 1307, 1357, 1405, 1551, 1642 |
| BspDI | ATCGAT | 1 cut(s) | 1125 |
| BspFNI | CGCG | 4 cut(s) | 201, 569, 1346, 1680 |
| BspLI | GGNNCC | 7 cut(s) | 559, 585, 975, 987, 1048, 1171, 1604 |
| BspMAI | CTGCAG | 1 cut(s) | 919 |
| BspMI | ACCTGC | 2 cut(s) | 154, 1920 |
| BspPI | GGATC | 4 cut(s) | 461, 1886, 1925, 2054 |
| BspQI | GCTCTTC | 1 cut(s) | 351 |
| BspT104I | TTCGAA | 3 cut(s) | 179, 994, 1830 |
| BspT107I | GGYRCC | 1 cut(s) | 557 |
| BspTNI | GGTCTC | 1 cut(s) | 647 |
| BsrDI | GCAATG | 1 cut(s) | 597 |
| BsrFI | RCCGGY | 1 cut(s) | 124 |
| BsrGI | TGTACA | 1 cut(s) | 1944 |
| BsrI | ACTGG | 6 cut(s) | 53, 141, 232, 254, 1971, 1990 |
| BssAI | RCCGGY | 1 cut(s) | 124 |
| BssECI | CCNNGG | 7 cut(s) | 469, 720, 898, 1165, 1188, 1440, 1470 |
| BssNAI | GTATAC | 1 cut(s) | 46 |
| BssT1I | CCWWGG | 4 cut(s) | 720, 1165, 1188, 1440 |
| Bst1107I | GTATAC | 1 cut(s) | 46 |
| Bst2UI | CCWGG | 4 cut(s) | 470, 900, 1876, 2007 |
| Bst4CI | ACNGT | 3 cut(s) | 290, 1582, 1612 |
| Bst6I | CTCTTC | 7 cut(s) | 84, 92, 351, 555, 996, 1694, 1827 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 833 |
| BstAUI | TGTACA | 1 cut(s) | 1944 |
| BstBI | TTCGAA | 3 cut(s) | 179, 994, 1830 |
| BstC8I | GCNNGC | 4 cut(s) | 241, 545, 620, 1280 |
| BstDSI | CCRYGG | 1 cut(s) | 1188 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 467, 1055 |
| BstF5I | GGATG | 2 cut(s) | 1466, 1499 |
| BstFNI | CGCG | 4 cut(s) | 201, 569, 1346, 1680 |
| BstH2I | RGCGCY | 1 cut(s) | 2046 |
| BstHHI | GCGC | 4 cut(s) | 7, 201, 1750, 2045 |
| BstMAI | GTCTC | 4 cut(s) | 40, 570, 647, 1135 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 205, 434, 809, 833, 853, 1343, 1907, 2042 |
| BstNI | CCWGG | 4 cut(s) | 470, 900, 1876, 2007 |
| BstNSI | RCATGY | 1 cut(s) | 1547 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1710 |
| BstSCI | CCNGG | 6 cut(s) | 299, 468, 898, 1874, 2005, 2045 |
| BstSFI | CTRYAG | 1 cut(s) | 915 |
| BstSLI | GKGCMC | 1 cut(s) | 560 |
| BstUI | CGCG | 4 cut(s) | 201, 569, 1346, 1680 |
| BstV1I | GCAGC | 8 cut(s) | 402, 405, 901, 929, 1082, 1314, 1762, 1810 |
| BstV2I | GAAGAC | 2 cut(s) | 1622, 1706 |
| BstZ17I | GTATAC | 1 cut(s) | 46 |
| Bsu15I | ATCGAT | 1 cut(s) | 1125 |
| BsuTUI | ATCGAT | 1 cut(s) | 1125 |
| BtgI | CCRYGG | 1 cut(s) | 1188 |
| BtgZI | GCGATG | 1 cut(s) | 1361 |
| BtsCI | GGATG | 2 cut(s) | 1466, 1499 |
| BtsI | GCAGTG | 2 cut(s) | 250, 747 |
| BtsIMutI | CAGTG | 2 cut(s) | 250, 747 |
| BtuMI | TCGCGA | 1 cut(s) | 1346 |
| BveI | ACCTGC | 2 cut(s) | 154, 1920 |
| Cac8I | GCNNGC | 4 cut(s) | 241, 545, 620, 1280 |
| CaiI | CAGNNNCTG | 1 cut(s) | 249 |
| CfoI | GCGC | 4 cut(s) | 7, 201, 1750, 2045 |
| Cfr10I | RCCGGY | 1 cut(s) | 124 |
| Cfr13I | GGNCC | 6 cut(s) | 621, 641, 985, 1046, 1602, 1675 |
| ClaI | ATCGAT | 1 cut(s) | 1125 |
| CseI | GACGC | 1 cut(s) | 558 |
| Csp6I | GTAC | 4 cut(s) | 276, 1182, 1684, 1945 |
| CviAII | CATG | 8 cut(s) | 55, 442, 540, 820, 1151, 1189, 1400, 1544 |
| CviQI | GTAC | 4 cut(s) | 276, 1182, 1684, 1945 |
| EaeI | YGGCCR | 3 cut(s) | 438, 901, 1593 |
| Eam1104I | CTCTTC | 7 cut(s) | 84, 92, 351, 555, 996, 1694, 1827 |
| EarI | CTCTTC | 7 cut(s) | 84, 92, 351, 555, 996, 1694, 1827 |
| EciI | GGCGGA | 1 cut(s) | 77 |
| Eco130I | CCWWGG | 4 cut(s) | 720, 1165, 1188, 1440 |
| Eco147I | AGGCCT | 3 cut(s) | 674, 729, 1000 |
| Eco31I | GGTCTC | 1 cut(s) | 647 |
| Eco47I | GGWCC | 3 cut(s) | 985, 1602, 1675 |
| Eco57I | CTGAAG | 5 cut(s) | 332, 858, 908, 1355, 1862 |
| Eco88I | CYCGRG | 1 cut(s) | 1132 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 467, 1055 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1046, 1602 |
| EcoRII | CCWGG | 4 cut(s) | 468, 898, 1874, 2005 |
| EcoT14I | CCWWGG | 4 cut(s) | 720, 1165, 1188, 1440 |
| ErhI | CCWWGG | 4 cut(s) | 720, 1165, 1188, 1440 |
| FaeI | CATG | 8 cut(s) | 58, 445, 543, 823, 1154, 1192, 1403, 1547 |
| FaqI | GGGAC | 3 cut(s) | 1151, 1458, 1984 |
| FatI | CATG | 8 cut(s) | 54, 441, 539, 819, 1150, 1188, 1399, 1543 |
| FbaI | TGATCA | 2 cut(s) | 360, 1062 |
| FblI | GTMKAC | 2 cut(s) | 45, 1479 |
| FokI | GGATG | 2 cut(s) | 1453, 1486 |
| FspBI | CTAG | 6 cut(s) | 446, 800, 1043, 1458, 1511, 1754 |
| GlaI | GCGC | 4 cut(s) | 6, 200, 1749, 2044 |
| GsaI | CCCAGC | 2 cut(s) | 606, 668 |
| GsuI | CTGGAG | 2 cut(s) | 452, 2090 |
| HaeII | RGCGCY | 1 cut(s) | 2046 |
| HapII | CCGG | 7 cut(s) | 118, 125, 300, 322, 378, 857, 2046 |
| HgaI | GACGC | 1 cut(s) | 558 |
| HhaI | GCGC | 4 cut(s) | 7, 201, 1750, 2045 |
| Hin1II | CATG | 8 cut(s) | 58, 445, 543, 823, 1154, 1192, 1403, 1547 |
| Hin6I | GCGC | 4 cut(s) | 5, 199, 1748, 2043 |
| HinP1I | GCGC | 4 cut(s) | 5, 199, 1748, 2043 |
| HincII | GTYRAC | 5 cut(s) | 1108, 1435, 1480, 1702, 1983 |
| HindII | GTYRAC | 5 cut(s) | 1108, 1435, 1480, 1702, 1983 |
| HinfI | GANTC | 7 cut(s) | 65, 260, 366, 381, 401, 877, 1203 |
| HpaII | CCGG | 7 cut(s) | 118, 125, 300, 322, 378, 857, 2046 |
| Hpy166II | GTNNAC | 8 cut(s) | 46, 864, 1108, 1435, 1480, 1675, 1702, 1983 |
| Hpy188I | TCNGA | 8 cut(s) | 214, 351, 365, 1067, 1249, 1366, 1471, 1651 |
| Hpy188III | TCNNGA | 8 cut(s) | 370, 573, 762, 938, 977, 1132, 1345, 1573 |
| Hpy8I | GTNNAC | 8 cut(s) | 46, 864, 1108, 1435, 1480, 1675, 1702, 1983 |
| Hpy99I | CGWCG | 2 cut(s) | 191, 574 |
| HpyAV | CCTTC | 5 cut(s) | 229, 265, 719, 990, 1293 |
| HpyCH4III | ACNGT | 3 cut(s) | 290, 1582, 1612 |
| HpyCH4IV | ACGT | 2 cut(s) | 954, 1566 |
| HpyCH4V | TGCA | 9 cut(s) | 311, 636, 715, 847, 917, 1238, 1337, 1735, 1929 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 205, 434, 809, 833, 853, 1343, 1907, 2042 |
| HpySE526I | ACGT | 2 cut(s) | 954, 1566 |
| Hsp92II | CATG | 8 cut(s) | 58, 445, 543, 823, 1154, 1192, 1403, 1547 |
| HspAI | GCGC | 4 cut(s) | 5, 199, 1748, 2043 |
| Ksp22I | TGATCA | 2 cut(s) | 360, 1062 |
| LguI | GCTCTTC | 1 cut(s) | 351 |
| LmnI | GCTCC | 3 cut(s) | 205, 928, 953 |
| Lsp1109I | GCAGC | 8 cut(s) | 402, 405, 901, 929, 1082, 1314, 1762, 1810 |
| LweI | GCATC | 5 cut(s) | 38, 492, 1361, 1722, 1753 |
| MaeI | CTAG | 6 cut(s) | 446, 800, 1043, 1458, 1511, 1754 |
| MaeII | ACGT | 2 cut(s) | 954, 1566 |
| MaeIII | GTNAC | 6 cut(s) | 245, 292, 473, 1390, 1778, 2018 |
| MfeI | CAATTG | 2 cut(s) | 1176, 1218 |
| MhlI | GDGCHC | 2 cut(s) | 560, 933 |
| MlsI | TGGCCA | 2 cut(s) | 903, 1595 |
| MluCI | AATT | 9 cut(s) | 413, 515, 690, 828, 1176, 1218, 1226, 1241, 1884 |
| MluNI | TGGCCA | 2 cut(s) | 903, 1595 |
| MlyI | GAGTC | 4 cut(s) | 74, 395, 871, 1197 |
| MmeI | TCCRAC | 1 cut(s) | 192 |
| Mox20I | TGGCCA | 2 cut(s) | 903, 1595 |
| MroXI | GAANNNNTTC | 2 cut(s) | 345, 769 |
| MscI | TGGCCA | 2 cut(s) | 903, 1595 |
| MseI | TTAA | 1 cut(s) | 678 |
| MslI | CAYNNNNRTG | 1 cut(s) | 446 |
| Msp20I | TGGCCA | 2 cut(s) | 903, 1595 |
| MspA1I | CMGCKG | 1 cut(s) | 668 |
| MspI | CCGG | 7 cut(s) | 118, 125, 300, 322, 378, 857, 2046 |
| MspR9I | CCNGG | 6 cut(s) | 301, 470, 900, 1876, 2007, 2047 |
| MunI | CAATTG | 2 cut(s) | 1176, 1218 |
| Mva1269I | GAATGC | 2 cut(s) | 379, 1931 |
| MvaI | CCWGG | 4 cut(s) | 470, 900, 1876, 2007 |
| MvnI | CGCG | 4 cut(s) | 201, 569, 1346, 1680 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 205, 434, 809, 833, 853, 1343, 1907, 2042 |
| NciI | CCSGG | 2 cut(s) | 301, 2047 |
| NcoI | CCATGG | 1 cut(s) | 1188 |
| NlaIII | CATG | 8 cut(s) | 58, 445, 543, 823, 1154, 1192, 1403, 1547 |
| NlaIV | GGNNCC | 7 cut(s) | 559, 585, 975, 987, 1048, 1171, 1604 |
| NmuCI | GTSAC | 5 cut(s) | 245, 292, 1390, 1778, 2018 |
| NruI | TCGCGA | 1 cut(s) | 1346 |
| NspI | RCATGY | 1 cut(s) | 1547 |
| NspV | TTCGAA | 3 cut(s) | 179, 994, 1830 |
| PaeR7I | CTCGAG | 1 cut(s) | 1132 |
| PaqCI | CACCTGC | 1 cut(s) | 154 |
| PceI | AGGCCT | 3 cut(s) | 674, 729, 1000 |
| PciSI | GCTCTTC | 1 cut(s) | 351 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1677, 1827 |
| PctI | GAATGC | 2 cut(s) | 379, 1931 |
| PdmI | GAANNNNTTC | 2 cut(s) | 345, 769 |
| PfeI | GAWTC | 3 cut(s) | 260, 366, 381 |
| PleI | GAGTC | 4 cut(s) | 73, 395, 871, 1197 |
| PpsI | GAGTC | 4 cut(s) | 73, 395, 871, 1197 |
| PpuMI | RGGWCCY | 1 cut(s) | 1602 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1710 |
| Psp5II | RGGWCCY | 1 cut(s) | 1602 |
| Psp6I | CCWGG | 4 cut(s) | 468, 898, 1874, 2005 |
| PspFI | CCCAGC | 2 cut(s) | 602, 664 |
| PspGI | CCWGG | 4 cut(s) | 468, 898, 1874, 2005 |
| PspN4I | GGNNCC | 7 cut(s) | 559, 585, 975, 987, 1048, 1171, 1604 |
| PspPI | GGNCC | 6 cut(s) | 621, 641, 985, 1046, 1602, 1675 |
| PspPPI | RGGWCCY | 1 cut(s) | 1602 |
| PstI | CTGCAG | 1 cut(s) | 919 |
| PstNI | CAGNNNCTG | 1 cut(s) | 249 |
| PvuII | CAGCTG | 1 cut(s) | 668 |
| RruI | TCGCGA | 1 cut(s) | 1346 |
| RsaI | GTAC | 4 cut(s) | 277, 1183, 1685, 1946 |
| RsaNI | GTAC | 4 cut(s) | 276, 1182, 1684, 1945 |
| RseI | CAYNNNNRTG | 1 cut(s) | 446 |
| SalI | GTCGAC | 1 cut(s) | 1478 |
| SapI | GCTCTTC | 1 cut(s) | 351 |
| SaqAI | TTAA | 1 cut(s) | 678 |
| Sau96I | GGNCC | 6 cut(s) | 621, 641, 985, 1046, 1602, 1675 |
| SchI | GAGTC | 4 cut(s) | 74, 395, 871, 1197 |
| ScrFI | CCNGG | 6 cut(s) | 301, 470, 900, 1876, 2007, 2047 |
| SduI | GDGCHC | 2 cut(s) | 560, 933 |
| SfaNI | GCATC | 5 cut(s) | 38, 492, 1361, 1722, 1753 |
| SfcI | CTRYAG | 1 cut(s) | 915 |
| Sfr274I | CTCGAG | 1 cut(s) | 1132 |
| SfuI | TTCGAA | 3 cut(s) | 179, 994, 1830 |
| SinI | GGWCC | 3 cut(s) | 985, 1602, 1675 |
| SlaI | CTCGAG | 1 cut(s) | 1132 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 446 |
| SmlI | CTYRAG | 2 cut(s) | 71, 1132 |
| SmoI | CTYRAG | 2 cut(s) | 71, 1132 |
| Sse9I | AATT | 9 cut(s) | 413, 515, 690, 828, 1176, 1218, 1226, 1241, 1884 |
| SseBI | AGGCCT | 3 cut(s) | 674, 729, 1000 |
| SsiI | CCGC | 9 cut(s) | 18, 59, 62, 170, 223, 426, 437, 567, 1678 |
| SspMI | CTAG | 6 cut(s) | 446, 800, 1043, 1458, 1511, 1754 |
| StuI | AGGCCT | 3 cut(s) | 674, 729, 1000 |
| StyD4I | CCNGG | 6 cut(s) | 299, 468, 898, 1874, 2005, 2045 |
| StyI | CCWWGG | 4 cut(s) | 720, 1165, 1188, 1440 |
| TaaI | ACNGT | 3 cut(s) | 290, 1582, 1612 |
| TaiI | ACGT | 2 cut(s) | 957, 1569 |
| TaqI | TCGA | 8 cut(s) | 179, 994, 1125, 1133, 1479, 1830, 1866, 1881 |
| TasI | AATT | 9 cut(s) | 413, 515, 690, 828, 1176, 1218, 1226, 1241, 1884 |
| TatI | WGTACW | 1 cut(s) | 1944 |
| TauI | GCSGC | 4 cut(s) | 21, 62, 173, 440 |
| TfiI | GAWTC | 3 cut(s) | 260, 366, 381 |
| Tru1I | TTAA | 1 cut(s) | 678 |
| Tru9I | TTAA | 1 cut(s) | 678 |
| TscAI | CASTG | 2 cut(s) | 250, 754 |
| TseFI | GTSAC | 5 cut(s) | 245, 292, 1390, 1778, 2018 |
| TseI | GCWGC | 8 cut(s) | 390, 393, 914, 917, 1070, 1302, 1750, 1823 |
| Tsp45I | GTSAC | 5 cut(s) | 245, 292, 1390, 1778, 2018 |
| TspGWI | ACGGA | 3 cut(s) | 351, 663, 763 |
| TspRI | CASTG | 2 cut(s) | 250, 754 |
| VpaK11BI | GGWCC | 3 cut(s) | 985, 1602, 1675 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 467, 1055 |
| XapI | RAATTY | 1 cut(s) | 515 |
| XceI | RCATGY | 1 cut(s) | 1547 |
| XhoI | CTCGAG | 1 cut(s) | 1132 |
| XmiI | GTMKAC | 2 cut(s) | 45, 1479 |
| XmnI | GAANNNNTTC | 2 cut(s) | 345, 769 |
| XspI | CTAG | 6 cut(s) | 446, 800, 1043, 1458, 1511, 1754 |