Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 756 |
| AccB1I | GGYRCC | 1 cut(s) | 1007 |
| AccI | GTMKAC | 1 cut(s) | 68 |
| AciI | CCGC | 3 cut(s) | 5, 201, 371 |
| AclWI | GGATC | 3 cut(s) | 452, 465, 591 |
| AcsI | RAATTY | 2 cut(s) | 1060, 1236 |
| AcuI | CTGAAG | 1 cut(s) | 1155 |
| AfaI | GTAC | 7 cut(s) | 33, 123, 189, 415, 536, 912, 1072 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 44, 742, 886 |
| AflIII | ACRYGT | 2 cut(s) | 787, 1215 |
| AgsI | TTSAA | 5 cut(s) | 177, 796, 985, 1001, 1015 |
| AhlI | ACTAGT | 1 cut(s) | 389 |
| AjiI | CACGTC | 1 cut(s) | 1218 |
| AjnI | CCWGG | 1 cut(s) | 976 |
| AluBI | AGCT | 4 cut(s) | 718, 1090, 1181, 1231 |
| AluI | AGCT | 4 cut(s) | 718, 1090, 1181, 1231 |
| Alw21I | GWGCWC | 2 cut(s) | 139, 1086 |
| Alw26I | GTCTC | 2 cut(s) | 186, 1224 |
| Alw44I | GTGCAC | 1 cut(s) | 135 |
| AlwI | GGATC | 3 cut(s) | 452, 465, 591 |
| Ama87I | CYCGRG | 1 cut(s) | 805 |
| AoxI | GGCC | 6 cut(s) | 227, 441, 527, 733, 1127, 1195 |
| ApaLI | GTGCAC | 1 cut(s) | 135 |
| ApeKI | GCWGC | 2 cut(s) | 559, 562 |
| ApoI | RAATTY | 2 cut(s) | 1060, 1236 |
| AspLEI | GCGC | 1 cut(s) | 757 |
| AspS9I | GGNCC | 5 cut(s) | 227, 398, 468, 527, 916 |
| AsuC2I | CCSGG | 5 cut(s) | 17, 38, 106, 806, 807 |
| AsuHPI | GGTGA | 1 cut(s) | 65 |
| AvaI | CYCGRG | 1 cut(s) | 805 |
| AvaII | GGWCC | 3 cut(s) | 398, 468, 916 |
| AxyI | CCTNAGG | 1 cut(s) | 402 |
| BaeGI | GKGCMC | 1 cut(s) | 139 |
| BamHI | GGATCC | 1 cut(s) | 457 |
| BanI | GGYRCC | 1 cut(s) | 1007 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 15, 47, 105, 137 |
| BbsI | GAAGAC | 3 cut(s) | 155, 288, 312 |
| Bbv12I | GWGCWC | 2 cut(s) | 139, 1086 |
| BbvI | GCAGC | 2 cut(s) | 546, 574 |
| BccI | CCATC | 2 cut(s) | 2, 566 |
| BceAI | ACGGC | 1 cut(s) | 428 |
| BciT130I | CCWGG | 1 cut(s) | 978 |
| BclI | TGATCA | 2 cut(s) | 256, 709 |
| BcnI | CCSGG | 5 cut(s) | 17, 38, 106, 806, 807 |
| BcoDI | GTCTC | 2 cut(s) | 186, 1224 |
| BcuI | ACTAGT | 1 cut(s) | 389 |
| BfaI | CTAG | 7 cut(s) | 252, 390, 434, 453, 650, 1151, 1178 |
| BfmI | CTRYAG | 1 cut(s) | 560 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 449 |
| BisI | GCNGC | 2 cut(s) | 560, 563 |
| BlsI | GCNGC | 2 cut(s) | 561, 564 |
| BmcAI | AGTACT | 1 cut(s) | 415 |
| Bme1390I | CCNGG | 6 cut(s) | 17, 38, 106, 806, 807, 978 |
| Bme18I | GGWCC | 3 cut(s) | 398, 468, 916 |
| BmeT110I | CYCGRG | 1 cut(s) | 805 |
| BmgBI | CACGTC | 1 cut(s) | 1218 |
| BmgT120I | GGNCC | 5 cut(s) | 227, 398, 468, 527, 916 |
| BmiI | GGNNCC | 4 cut(s) | 14, 459, 469, 1009 |
| BmrFI | CCNGG | 6 cut(s) | 17, 38, 106, 806, 807, 978 |
| BmrI | ACTGGG | 3 cut(s) | 960, 964, 1157 |
| BmsI | GCATC | 2 cut(s) | 251, 689 |
| BmuI | ACTGGG | 3 cut(s) | 960, 964, 1157 |
| BpiI | GAAGAC | 3 cut(s) | 155, 288, 312 |
| BpmI | CTGGAG | 1 cut(s) | 402 |
| Bpu10I | CCTNAGC | 1 cut(s) | 210 |
| BpuMI | CCSGG | 5 cut(s) | 17, 38, 106, 806, 807 |
| BsaBI | GATNNNNATC | 1 cut(s) | 708 |
| BsaJI | CCNNGG | 6 cut(s) | 16, 36, 105, 530, 805, 976 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 431, 461 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 44, 742, 886 |
| Bse1I | ACTGG | 4 cut(s) | 419, 955, 970, 1163 |
| Bse21I | CCTNAGG | 1 cut(s) | 402 |
| Bse8I | GATNNNNATC | 1 cut(s) | 708 |
| BseBI | CCWGG | 1 cut(s) | 978 |
| BseDI | CCNNGG | 6 cut(s) | 16, 36, 105, 530, 805, 976 |
| BseGI | GGATG | 3 cut(s) | 13, 197, 801 |
| BseJI | GATNNNNATC | 1 cut(s) | 708 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 44, 742, 886 |
| BseNI | ACTGG | 4 cut(s) | 419, 955, 970, 1163 |
| BseRI | GAGGAG | 1 cut(s) | 668 |
| BseSI | GKGCMC | 1 cut(s) | 139 |
| BseXI | GCAGC | 2 cut(s) | 546, 574 |
| BshFI | GGCC | 6 cut(s) | 229, 443, 529, 735, 1129, 1197 |
| BshNI | GGYRCC | 1 cut(s) | 1007 |
| BsiHKAI | GWGCWC | 2 cut(s) | 139, 1086 |
| BsiHKCI | CYCGRG | 1 cut(s) | 805 |
| BsiSI | CCGG | 5 cut(s) | 16, 38, 105, 806, 919 |
| BslFI | GGGAC | 4 cut(s) | 481, 967, 1083, 1145 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 44, 742, 886 |
| BsmAI | GTCTC | 2 cut(s) | 186, 1224 |
| BsmBI | CGTCTC | 1 cut(s) | 1224 |
| BsmFI | GGGAC | 4 cut(s) | 481, 967, 1083, 1145 |
| BsmI | GAATGC | 2 cut(s) | 757, 1032 |
| BsnI | GGCC | 6 cut(s) | 229, 443, 529, 735, 1129, 1197 |
| BsoBI | CYCGRG | 1 cut(s) | 805 |
| Bsp1286I | GDGCHC | 2 cut(s) | 139, 1086 |
| Bsp1407I | TGTACA | 1 cut(s) | 910 |
| Bsp143I | GATC | 5 cut(s) | 256, 457, 502, 583, 709 |
| Bsp19I | CCATGG | 1 cut(s) | 530 |
| BspACI | CCGC | 3 cut(s) | 5, 201, 371 |
| BspANI | GGCC | 6 cut(s) | 229, 443, 529, 735, 1129, 1197 |
| BspLI | GGNNCC | 4 cut(s) | 14, 459, 469, 1009 |
| BspMAI | CTGCAG | 1 cut(s) | 564 |
| BspPI | GGATC | 3 cut(s) | 452, 465, 591 |
| BspQI | GCTCTTC | 1 cut(s) | 617 |
| BspT107I | GGYRCC | 1 cut(s) | 1007 |
| BsrGI | TGTACA | 1 cut(s) | 910 |
| BsrI | ACTGG | 4 cut(s) | 419, 955, 970, 1163 |
| BssECI | CCNNGG | 6 cut(s) | 16, 36, 105, 530, 805, 976 |
| BssMI | GATC | 5 cut(s) | 256, 457, 502, 583, 709 |
| BssNAI | GTATAC | 1 cut(s) | 69 |
| BssT1I | CCWWGG | 1 cut(s) | 530 |
| Bst1107I | GTATAC | 1 cut(s) | 69 |
| Bst2UI | CCWGG | 1 cut(s) | 978 |
| Bst4CI | ACNGT | 1 cut(s) | 472 |
| Bst6I | CTCTTC | 3 cut(s) | 316, 617, 1131 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 686 |
| BstAUI | TGTACA | 1 cut(s) | 910 |
| BstC8I | GCNNGC | 5 cut(s) | 323, 591, 865, 924, 1131 |
| BstDEI | CTNAG | 3 cut(s) | 210, 315, 402 |
| BstDSI | CCRYGG | 1 cut(s) | 530 |
| BstF5I | GGATG | 3 cut(s) | 13, 197, 801 |
| BstHHI | GCGC | 1 cut(s) | 757 |
| BstKTI | GATC | 5 cut(s) | 259, 460, 505, 586, 712 |
| BstMAI | GTCTC | 2 cut(s) | 186, 1224 |
| BstMBI | GATC | 5 cut(s) | 256, 457, 502, 583, 709 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 449, 686 |
| BstNI | CCWGG | 1 cut(s) | 978 |
| BstNSI | RCATGY | 3 cut(s) | 218, 856, 867 |
| BstSCI | CCNGG | 6 cut(s) | 15, 36, 104, 804, 805, 976 |
| BstSFI | CTRYAG | 1 cut(s) | 560 |
| BstSLI | GKGCMC | 1 cut(s) | 139 |
| BstV1I | GCAGC | 2 cut(s) | 546, 574 |
| BstV2I | GAAGAC | 3 cut(s) | 155, 288, 312 |
| BstX2I | RGATCY | 2 cut(s) | 457, 583 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 977 |
| BstYI | RGATCY | 2 cut(s) | 457, 583 |
| BstZ17I | GTATAC | 1 cut(s) | 69 |
| Bsu36I | CCTNAGG | 1 cut(s) | 402 |
| BsuRI | GGCC | 6 cut(s) | 229, 443, 529, 735, 1129, 1197 |
| BtgI | CCRYGG | 1 cut(s) | 530 |
| BtgZI | GCGATG | 1 cut(s) | 1191 |
| BtrI | CACGTC | 1 cut(s) | 1218 |
| BtsCI | GGATG | 3 cut(s) | 13, 197, 801 |
| BtsIMutI | CAGTG | 1 cut(s) | 1170 |
| Cac8I | GCNNGC | 5 cut(s) | 323, 591, 865, 924, 1131 |
| CfoI | GCGC | 1 cut(s) | 757 |
| Cfr13I | GGNCC | 5 cut(s) | 227, 398, 468, 527, 916 |
| Cfr9I | CCCGGG | 1 cut(s) | 805 |
| Csp6I | GTAC | 7 cut(s) | 32, 122, 188, 414, 535, 911, 1071 |
| CviQI | GTAC | 7 cut(s) | 32, 122, 188, 414, 535, 911, 1071 |
| DdeI | CTNAG | 3 cut(s) | 210, 315, 402 |
| DpnI | GATC | 5 cut(s) | 258, 459, 504, 585, 711 |
| DpnII | GATC | 5 cut(s) | 256, 457, 502, 583, 709 |
| Eam1104I | CTCTTC | 3 cut(s) | 316, 617, 1131 |
| EarI | CTCTTC | 3 cut(s) | 316, 617, 1131 |
| EciI | GGCGGA | 2 cut(s) | 20, 386 |
| Eco130I | CCWWGG | 1 cut(s) | 530 |
| Eco147I | AGGCCT | 2 cut(s) | 735, 1129 |
| Eco47I | GGWCC | 3 cut(s) | 398, 468, 916 |
| Eco57I | CTGAAG | 1 cut(s) | 1155 |
| Eco81I | CCTNAGG | 1 cut(s) | 402 |
| Eco88I | CYCGRG | 1 cut(s) | 805 |
| EcoO109I | RGGNCCY | 1 cut(s) | 398 |
| EcoRII | CCWGG | 1 cut(s) | 976 |
| EcoT14I | CCWWGG | 1 cut(s) | 530 |
| EcoT22I | ATGCAT | 1 cut(s) | 495 |
| ErhI | CCWWGG | 1 cut(s) | 530 |
| Esp3I | CGTCTC | 1 cut(s) | 1224 |
| FaqI | GGGAC | 4 cut(s) | 481, 967, 1083, 1145 |
| FauNDI | CATATG | 2 cut(s) | 261, 384 |
| FbaI | TGATCA | 2 cut(s) | 256, 709 |
| FblI | GTMKAC | 1 cut(s) | 68 |
| Fnu4HI | GCNGC | 2 cut(s) | 560, 563 |
| FokI | GGATG | 3 cut(s) | 20, 184, 788 |
| Fsp4HI | GCNGC | 2 cut(s) | 560, 563 |
| FspBI | CTAG | 7 cut(s) | 252, 390, 434, 453, 650, 1151, 1178 |
| FspI | TGCGCA | 1 cut(s) | 756 |
| GlaI | GCGC | 1 cut(s) | 756 |
| GluI | GCNGC | 2 cut(s) | 560, 563 |
| GsuI | CTGGAG | 1 cut(s) | 402 |
| HaeIII | GGCC | 6 cut(s) | 229, 443, 529, 735, 1129, 1197 |
| HapII | CCGG | 5 cut(s) | 16, 38, 105, 806, 919 |
| HhaI | GCGC | 1 cut(s) | 757 |
| Hin6I | GCGC | 1 cut(s) | 755 |
| HinP1I | GCGC | 1 cut(s) | 755 |
| HinfI | GANTC | 3 cut(s) | 308, 377, 981 |
| HpaII | CCGG | 5 cut(s) | 16, 38, 105, 806, 919 |
| HphI | GGTGA | 1 cut(s) | 65 |
| Hpy166II | GTNNAC | 3 cut(s) | 69, 137, 220 |
| Hpy188I | TCNGA | 3 cut(s) | 131, 343, 963 |
| Hpy188III | TCNNGA | 1 cut(s) | 701 |
| Hpy8I | GTNNAC | 3 cut(s) | 69, 137, 220 |
| HpyAV | CCTTC | 2 cut(s) | 138, 1021 |
| HpyCH4III | ACNGT | 1 cut(s) | 472 |
| HpyCH4IV | ACGT | 2 cut(s) | 787, 1217 |
| HpyCH4V | TGCA | 8 cut(s) | 137, 242, 493, 562, 593, 680, 867, 1030 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 449, 686 |
| HpyF3I | CTNAG | 3 cut(s) | 210, 315, 402 |
| HpySE526I | ACGT | 2 cut(s) | 787, 1217 |
| HspAI | GCGC | 1 cut(s) | 755 |
| Ksp22I | TGATCA | 2 cut(s) | 256, 709 |
| Kzo9I | GATC | 5 cut(s) | 256, 457, 502, 583, 709 |
| LguI | GCTCTTC | 1 cut(s) | 617 |
| LmnI | GCTCC | 1 cut(s) | 267 |
| Lsp1109I | GCAGC | 2 cut(s) | 546, 574 |
| LweI | GCATC | 2 cut(s) | 251, 689 |
| MaeI | CTAG | 7 cut(s) | 252, 390, 434, 453, 650, 1151, 1178 |
| MaeII | ACGT | 2 cut(s) | 787, 1217 |
| MaeIII | GTNAC | 3 cut(s) | 595, 943, 1168 |
| MalI | GATC | 5 cut(s) | 258, 459, 504, 585, 711 |
| MboI | GATC | 5 cut(s) | 256, 457, 502, 583, 709 |
| MfeI | CAATTG | 3 cut(s) | 237, 1050, 1077 |
| MflI | RGATCY | 2 cut(s) | 457, 583 |
| MhlI | GDGCHC | 2 cut(s) | 139, 1086 |
| MluCI | AATT | 7 cut(s) | 237, 627, 822, 1050, 1060, 1077, 1236 |
| MlyI | GAGTC | 1 cut(s) | 302 |
| Mph1103I | ATGCAT | 1 cut(s) | 495 |
| MseI | TTAA | 3 cut(s) | 624, 783, 1124 |
| MslI | CAYNNNNRTG | 2 cut(s) | 488, 906 |
| MspI | CCGG | 5 cut(s) | 16, 38, 105, 806, 919 |
| MspR9I | CCNGG | 6 cut(s) | 17, 38, 106, 806, 807, 978 |
| MunI | CAATTG | 3 cut(s) | 237, 1050, 1077 |
| Mva1269I | GAATGC | 2 cut(s) | 757, 1032 |
| MvaI | CCWGG | 1 cut(s) | 978 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 449, 686 |
| NciI | CCSGG | 5 cut(s) | 17, 38, 106, 806, 807 |
| NcoI | CCATGG | 1 cut(s) | 530 |
| NdeI | CATATG | 2 cut(s) | 261, 384 |
| NdeII | GATC | 5 cut(s) | 256, 457, 502, 583, 709 |
| NlaIV | GGNNCC | 4 cut(s) | 14, 459, 469, 1009 |
| NmuCI | GTSAC | 1 cut(s) | 595 |
| NsbI | TGCGCA | 1 cut(s) | 756 |
| NsiI | ATGCAT | 1 cut(s) | 495 |
| NspI | RCATGY | 3 cut(s) | 218, 856, 867 |
| PaeI | GCATGC | 1 cut(s) | 867 |
| PceI | AGGCCT | 2 cut(s) | 735, 1129 |
| PciSI | GCTCTTC | 1 cut(s) | 617 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1214 |
| PctI | GAATGC | 2 cut(s) | 757, 1032 |
| PfeI | GAWTC | 2 cut(s) | 377, 981 |
| PkrI | GCNGC | 2 cut(s) | 561, 564 |
| PleI | GAGTC | 1 cut(s) | 302 |
| PpsI | GAGTC | 1 cut(s) | 302 |
| PpuMI | RGGWCCY | 1 cut(s) | 398 |
| Psp5II | RGGWCCY | 1 cut(s) | 398 |
| Psp6I | CCWGG | 1 cut(s) | 976 |
| PspGI | CCWGG | 1 cut(s) | 976 |
| PspN4I | GGNNCC | 4 cut(s) | 14, 459, 469, 1009 |
| PspPI | GGNCC | 5 cut(s) | 227, 398, 468, 527, 916 |
| PspPPI | RGGWCCY | 1 cut(s) | 398 |
| PstI | CTGCAG | 1 cut(s) | 564 |
| PsuI | RGATCY | 2 cut(s) | 457, 583 |
| RsaI | GTAC | 7 cut(s) | 33, 123, 189, 415, 536, 912, 1072 |
| RsaNI | GTAC | 7 cut(s) | 32, 122, 188, 414, 535, 911, 1071 |
| RseI | CAYNNNNRTG | 2 cut(s) | 488, 906 |
| SapI | GCTCTTC | 1 cut(s) | 617 |
| SaqAI | TTAA | 3 cut(s) | 624, 783, 1124 |
| SatI | GCNGC | 2 cut(s) | 560, 563 |
| Sau3AI | GATC | 5 cut(s) | 256, 457, 502, 583, 709 |
| Sau96I | GGNCC | 5 cut(s) | 227, 398, 468, 527, 916 |
| ScaI | AGTACT | 1 cut(s) | 415 |
| SchI | GAGTC | 1 cut(s) | 302 |
| ScrFI | CCNGG | 6 cut(s) | 17, 38, 106, 806, 807, 978 |
| SduI | GDGCHC | 2 cut(s) | 139, 1086 |
| SfaNI | GCATC | 2 cut(s) | 251, 689 |
| SfcI | CTRYAG | 1 cut(s) | 560 |
| SinI | GGWCC | 3 cut(s) | 398, 468, 916 |
| SmaI | CCCGGG | 1 cut(s) | 807 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 488, 906 |
| SpeI | ACTAGT | 1 cut(s) | 389 |
| SphI | GCATGC | 1 cut(s) | 867 |
| Sse9I | AATT | 7 cut(s) | 237, 627, 822, 1050, 1060, 1077, 1236 |
| SseBI | AGGCCT | 2 cut(s) | 735, 1129 |
| SsiI | CCGC | 3 cut(s) | 5, 201, 371 |
| SspMI | CTAG | 7 cut(s) | 252, 390, 434, 453, 650, 1151, 1178 |
| StuI | AGGCCT | 2 cut(s) | 735, 1129 |
| StyD4I | CCNGG | 6 cut(s) | 15, 36, 104, 804, 805, 976 |
| StyI | CCWWGG | 1 cut(s) | 530 |
| TaaI | ACNGT | 1 cut(s) | 472 |
| TaiI | ACGT | 2 cut(s) | 790, 1220 |
| TaqI | TCGA | 1 cut(s) | 579 |
| TasI | AATT | 7 cut(s) | 237, 627, 822, 1050, 1060, 1077, 1236 |
| TatI | WGTACW | 3 cut(s) | 121, 413, 910 |
| TfiI | GAWTC | 2 cut(s) | 377, 981 |
| Tru1I | TTAA | 3 cut(s) | 624, 783, 1124 |
| Tru9I | TTAA | 3 cut(s) | 624, 783, 1124 |
| TscAI | CASTG | 1 cut(s) | 1170 |
| TseFI | GTSAC | 1 cut(s) | 595 |
| TseI | GCWGC | 2 cut(s) | 559, 562 |
| Tsp45I | GTSAC | 1 cut(s) | 595 |
| TspDTI | ATGAA | 9 cut(s) | 186, 530, 617, 686, 737, 897, 951, 983, 1010 |
| TspMI | CCCGGG | 1 cut(s) | 805 |
| TspRI | CASTG | 1 cut(s) | 1170 |
| VneI | GTGCAC | 1 cut(s) | 135 |
| VpaK11BI | GGWCC | 3 cut(s) | 398, 468, 916 |
| XapI | RAATTY | 2 cut(s) | 1060, 1236 |
| XceI | RCATGY | 3 cut(s) | 218, 856, 867 |
| XmaI | CCCGGG | 1 cut(s) | 805 |
| XmiI | GTMKAC | 1 cut(s) | 68 |
| XspI | CTAG | 7 cut(s) | 252, 390, 434, 453, 650, 1151, 1178 |
| ZrmI | AGTACT | 1 cut(s) | 415 |
| Zsp2I | ATGCAT | 1 cut(s) | 495 |