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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 245 |
| AccB1I | GGYRCC | 1 cut(s) | 556 |
| AcsI | RAATTY | 1 cut(s) | 563 |
| AcuI | CTGAAG | 1 cut(s) | 154 |
| AfaI | GTAC | 2 cut(s) | 190, 379 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 368 |
| AhlI | ACTAGT | 1 cut(s) | 424 |
| AjnI | CCWGG | 1 cut(s) | 447 |
| AluBI | AGCT | 7 cut(s) | 48, 168, 174, 195, 355, 548, 576 |
| AluI | AGCT | 7 cut(s) | 48, 168, 174, 195, 355, 548, 576 |
| Alw26I | GTCTC | 1 cut(s) | 446 |
| ApeKI | GCWGC | 3 cut(s) | 86, 545, 569 |
| ApoI | RAATTY | 1 cut(s) | 563 |
| AseI | ATTAAT | 1 cut(s) | 459 |
| AspLEI | GCGC | 1 cut(s) | 246 |
| AsuHPI | GGTGA | 1 cut(s) | 194 |
| BanI | GGYRCC | 1 cut(s) | 556 |
| BbvI | GCAGC | 2 cut(s) | 98, 557 |
| BccI | CCATC | 2 cut(s) | 370, 512 |
| BciT130I | CCWGG | 1 cut(s) | 449 |
| BcoDI | GTCTC | 1 cut(s) | 446 |
| BcuI | ACTAGT | 1 cut(s) | 424 |
| BfaI | CTAG | 3 cut(s) | 51, 192, 425 |
| BfmI | CTRYAG | 1 cut(s) | 399 |
| BisI | GCNGC | 3 cut(s) | 87, 546, 570 |
| BlsI | GCNGC | 3 cut(s) | 88, 547, 571 |
| Bme1390I | CCNGG | 1 cut(s) | 449 |
| BmiI | GGNNCC | 2 cut(s) | 315, 558 |
| BmrFI | CCNGG | 1 cut(s) | 449 |
| BmsI | GCATC | 1 cut(s) | 220 |
| BsaJI | CCNNGG | 1 cut(s) | 69 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 368 |
| Bse1I | ACTGG | 2 cut(s) | 251, 536 |
| BseBI | CCWGG | 1 cut(s) | 449 |
| BseDI | CCNNGG | 1 cut(s) | 69 |
| BseGI | GGATG | 1 cut(s) | 523 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 368 |
| BseMII | CTCAG | 1 cut(s) | 357 |
| BseNI | ACTGG | 2 cut(s) | 251, 536 |
| BseXI | GCAGC | 2 cut(s) | 98, 557 |
| BshNI | GGYRCC | 1 cut(s) | 556 |
| BsiSI | CCGG | 1 cut(s) | 560 |
| BslFI | GGGAC | 2 cut(s) | 184, 407 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 368 |
| BsmAI | GTCTC | 1 cut(s) | 446 |
| BsmFI | GGGAC | 2 cut(s) | 184, 407 |
| BsmI | GAATGC | 1 cut(s) | 415 |
| Bsp143I | GATC | 2 cut(s) | 30, 184 |
| Bsp19I | CCATGG | 1 cut(s) | 69 |
| BspCNI | CTCAG | 1 cut(s) | 358 |
| BspLI | GGNNCC | 2 cut(s) | 315, 558 |
| BspT107I | GGYRCC | 1 cut(s) | 556 |
| BsrI | ACTGG | 2 cut(s) | 251, 536 |
| BssECI | CCNNGG | 1 cut(s) | 69 |
| BssMI | GATC | 2 cut(s) | 30, 184 |
| BssT1I | CCWWGG | 1 cut(s) | 69 |
| Bst2UI | CCWGG | 1 cut(s) | 449 |
| Bst4CI | ACNGT | 2 cut(s) | 139, 556 |
| BstC8I | GCNNGC | 2 cut(s) | 524, 574 |
| BstDEI | CTNAG | 2 cut(s) | 34, 366 |
| BstDSI | CCRYGG | 1 cut(s) | 69 |
| BstF5I | GGATG | 1 cut(s) | 523 |
| BstHHI | GCGC | 1 cut(s) | 246 |
| BstKTI | GATC | 2 cut(s) | 33, 187 |
| BstMAI | GTCTC | 1 cut(s) | 446 |
| BstMBI | GATC | 2 cut(s) | 30, 184 |
| BstNI | CCWGG | 1 cut(s) | 449 |
| BstSCI | CCNGG | 1 cut(s) | 447 |
| BstSFI | CTRYAG | 1 cut(s) | 399 |
| BstV1I | GCAGC | 2 cut(s) | 98, 557 |
| BtgI | CCRYGG | 1 cut(s) | 69 |
| BtsCI | GGATG | 1 cut(s) | 523 |
| BtsI | GCAGTG | 1 cut(s) | 504 |
| BtsIMutI | CAGTG | 3 cut(s) | 135, 258, 504 |
| Cac8I | GCNNGC | 2 cut(s) | 524, 574 |
| CfoI | GCGC | 1 cut(s) | 246 |
| Csp6I | GTAC | 2 cut(s) | 189, 378 |
| CviAII | CATG | 4 cut(s) | 70, 92, 161, 209 |
| CviJI | RGCY | 9 cut(s) | 48, 153, 168, 174, 195, 337, 355, 548, 576 |
| CviKI_1 | RGCY | 9 cut(s) | 48, 153, 168, 174, 195, 337, 355, 548, 576 |
| CviQI | GTAC | 2 cut(s) | 189, 378 |
| DdeI | CTNAG | 2 cut(s) | 34, 366 |
| DpnI | GATC | 2 cut(s) | 32, 186 |
| DpnII | GATC | 2 cut(s) | 30, 184 |
| DraI | TTTAAA | 1 cut(s) | 178 |
| Eco130I | CCWWGG | 1 cut(s) | 69 |
| Eco57I | CTGAAG | 1 cut(s) | 154 |
| EcoRII | CCWGG | 1 cut(s) | 447 |
| EcoT14I | CCWWGG | 1 cut(s) | 69 |
| ErhI | CCWWGG | 1 cut(s) | 69 |
| FaeI | CATG | 4 cut(s) | 73, 95, 164, 212 |
| FaiI | YATR | 9 cut(s) | 56, 71, 93, 102, 117, 162, 210, 359, 374 |
| FaqI | GGGAC | 2 cut(s) | 184, 407 |
| FatI | CATG | 4 cut(s) | 69, 91, 160, 208 |
| Fnu4HI | GCNGC | 3 cut(s) | 87, 546, 570 |
| FokI | GGATG | 1 cut(s) | 530 |
| Fsp4HI | GCNGC | 3 cut(s) | 87, 546, 570 |
| FspBI | CTAG | 3 cut(s) | 51, 192, 425 |
| FspI | TGCGCA | 1 cut(s) | 245 |
| GlaI | GCGC | 1 cut(s) | 245 |
| GluI | GCNGC | 3 cut(s) | 87, 546, 570 |
| HapII | CCGG | 1 cut(s) | 560 |
| HhaI | GCGC | 1 cut(s) | 246 |
| Hin1II | CATG | 4 cut(s) | 73, 95, 164, 212 |
| Hin6I | GCGC | 1 cut(s) | 244 |
| HinP1I | GCGC | 1 cut(s) | 244 |
| HincII | GTYRAC | 2 cut(s) | 76, 445 |
| HindII | GTYRAC | 2 cut(s) | 76, 445 |
| HinfI | GANTC | 1 cut(s) | 395 |
| HpaII | CCGG | 1 cut(s) | 560 |
| HphI | GGTGA | 1 cut(s) | 194 |
| Hpy166II | GTNNAC | 3 cut(s) | 76, 302, 445 |
| Hpy188I | TCNGA | 3 cut(s) | 286, 318, 367 |
| Hpy188III | TCNNGA | 1 cut(s) | 123 |
| Hpy8I | GTNNAC | 3 cut(s) | 76, 302, 445 |
| HpyAV | CCTTC | 1 cut(s) | 283 |
| HpyCH4III | ACNGT | 2 cut(s) | 139, 556 |
| HpyCH4V | TGCA | 6 cut(s) | 160, 212, 350, 385, 413, 569 |
| HpyF3I | CTNAG | 2 cut(s) | 34, 366 |
| Hsp92II | CATG | 4 cut(s) | 73, 95, 164, 212 |
| HspAI | GCGC | 1 cut(s) | 244 |
| Kzo9I | GATC | 2 cut(s) | 30, 184 |
| Lsp1109I | GCAGC | 2 cut(s) | 98, 557 |
| LweI | GCATC | 1 cut(s) | 220 |
| MaeI | CTAG | 3 cut(s) | 51, 192, 425 |
| MaeIII | GTNAC | 1 cut(s) | 463 |
| MalI | GATC | 2 cut(s) | 32, 186 |
| MboI | GATC | 2 cut(s) | 30, 184 |
| MboII | GAAGA | 1 cut(s) | 138 |
| MluCI | AATT | 4 cut(s) | 64, 129, 456, 563 |
| MlyI | GAGTC | 1 cut(s) | 389 |
| MnlI | CCTC | 4 cut(s) | 212, 216, 337, 361 |
| MseI | TTAA | 2 cut(s) | 177, 459 |
| MspI | CCGG | 1 cut(s) | 560 |
| MspR9I | CCNGG | 1 cut(s) | 449 |
| Mva1269I | GAATGC | 1 cut(s) | 415 |
| MvaI | CCWGG | 1 cut(s) | 449 |
| NcoI | CCATGG | 1 cut(s) | 69 |
| NdeII | GATC | 2 cut(s) | 30, 184 |
| NlaIII | CATG | 4 cut(s) | 73, 95, 164, 212 |
| NlaIV | GGNNCC | 2 cut(s) | 315, 558 |
| NmuCI | GTSAC | 1 cut(s) | 463 |
| NsbI | TGCGCA | 1 cut(s) | 245 |
| PctI | GAATGC | 1 cut(s) | 415 |
| PflFI | GACNNNGTC | 1 cut(s) | 137 |
| PkrI | GCNGC | 3 cut(s) | 88, 547, 571 |
| PleI | GAGTC | 1 cut(s) | 389 |
| PpsI | GAGTC | 1 cut(s) | 389 |
| PshBI | ATTAAT | 1 cut(s) | 459 |
| Psp6I | CCWGG | 1 cut(s) | 447 |
| PspGI | CCWGG | 1 cut(s) | 447 |
| PspN4I | GGNNCC | 2 cut(s) | 315, 558 |
| PsyI | GACNNNGTC | 1 cut(s) | 137 |
| RsaI | GTAC | 2 cut(s) | 190, 379 |
| RsaNI | GTAC | 2 cut(s) | 189, 378 |
| SaqAI | TTAA | 2 cut(s) | 177, 459 |
| SatI | GCNGC | 3 cut(s) | 87, 546, 570 |
| Sau3AI | GATC | 2 cut(s) | 30, 184 |
| SchI | GAGTC | 1 cut(s) | 389 |
| ScrFI | CCNGG | 1 cut(s) | 449 |
| SfaNI | GCATC | 1 cut(s) | 220 |
| SfcI | CTRYAG | 1 cut(s) | 399 |
| SpeI | ACTAGT | 1 cut(s) | 424 |
| Sse9I | AATT | 4 cut(s) | 64, 129, 456, 563 |
| SspI | AATATT | 1 cut(s) | 331 |
| SspMI | CTAG | 3 cut(s) | 51, 192, 425 |
| StyD4I | CCNGG | 1 cut(s) | 447 |
| StyI | CCWWGG | 1 cut(s) | 69 |
| TaaI | ACNGT | 2 cut(s) | 139, 556 |
| TasI | AATT | 4 cut(s) | 64, 129, 456, 563 |
| TatI | WGTACW | 1 cut(s) | 377 |
| Tru1I | TTAA | 2 cut(s) | 177, 459 |
| Tru9I | TTAA | 2 cut(s) | 177, 459 |
| TscAI | CASTG | 3 cut(s) | 142, 258, 511 |
| TseFI | GTSAC | 1 cut(s) | 463 |
| TseI | GCWGC | 3 cut(s) | 86, 545, 569 |
| Tsp45I | GTSAC | 1 cut(s) | 463 |
| TspRI | CASTG | 3 cut(s) | 142, 258, 511 |
| Tth111I | GACNNNGTC | 1 cut(s) | 137 |
| VspI | ATTAAT | 1 cut(s) | 459 |
| XapI | RAATTY | 1 cut(s) | 563 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 76 |
| XspI | CTAG | 3 cut(s) | 51, 192, 425 |