ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Ycf54 | PF10674 | 86 - 175 | 4.6e-34 | Ycf54 protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 134 |
| Acc36I | ACCTGC | 2 cut(s) | 134, 246 |
| AccBSI | CCGCTC | 1 cut(s) | 331 |
| AciI | CCGC | 3 cut(s) | 207, 234, 331 |
| AcoI | YGGCCR | 1 cut(s) | 273 |
| AcyI | GRCGYC | 2 cut(s) | 42, 59 |
| AfaI | GTAC | 2 cut(s) | 196, 260 |
| AgsI | TTSAA | 2 cut(s) | 521, 574 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 269, 301, 476, 508 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 308, 340 |
| AluBI | AGCT | 6 cut(s) | 49, 116, 226, 231, 487, 524 |
| AluI | AGCT | 6 cut(s) | 49, 116, 226, 231, 487, 524 |
| Alw26I | GTCTC | 1 cut(s) | 457 |
| AoxI | GGCC | 5 cut(s) | 273, 434, 463, 629, 660 |
| ApaI | GGGCCC | 1 cut(s) | 633 |
| ApeKI | GCWGC | 3 cut(s) | 5, 32, 129 |
| AspS9I | GGNCC | 4 cut(s) | 464, 496, 629, 630 |
| AsuC2I | CCSGG | 1 cut(s) | 39 |
| AsuHPI | GGTGA | 2 cut(s) | 147, 157 |
| AvaII | GGWCC | 1 cut(s) | 496 |
| BaeGI | GKGCMC | 1 cut(s) | 633 |
| BalI | TGGCCA | 1 cut(s) | 275 |
| BanII | GRGCYC | 2 cut(s) | 390, 633 |
| BbvI | GCAGC | 3 cut(s) | 17, 19, 141 |
| BceAI | ACGGC | 2 cut(s) | 185, 194 |
| BcnI | CCSGG | 1 cut(s) | 39 |
| BcoDI | GTCTC | 1 cut(s) | 457 |
| BfaI | CTAG | 2 cut(s) | 420, 533 |
| BfmI | CTRYAG | 2 cut(s) | 127, 550 |
| BfuAI | ACCTGC | 2 cut(s) | 134, 246 |
| BisI | GCNGC | 5 cut(s) | 6, 33, 130, 207, 332 |
| BlpI | GCTNAGC | 1 cut(s) | 227 |
| BlsI | GCNGC | 5 cut(s) | 7, 34, 131, 208, 333 |
| Bme1390I | CCNGG | 1 cut(s) | 39 |
| Bme18I | GGWCC | 1 cut(s) | 496 |
| BmgT120I | GGNCC | 4 cut(s) | 464, 496, 629, 630 |
| BmiI | GGNNCC | 2 cut(s) | 630, 631 |
| BmrFI | CCNGG | 1 cut(s) | 39 |
| BmsI | GCATC | 1 cut(s) | 14 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 227 |
| BpuMI | CCSGG | 1 cut(s) | 39 |
| BsaHI | GRCGYC | 2 cut(s) | 42, 59 |
| BsaI | GGTCTC | 1 cut(s) | 457 |
| BsaJI | CCNNGG | 1 cut(s) | 467 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 308, 338 |
| BseDI | CCNNGG | 1 cut(s) | 467 |
| BseMII | CTCAG | 6 cut(s) | 32, 126, 241, 479, 516, 609 |
| BseRI | GAGGAG | 8 cut(s) | 138, 166, 169, 172, 175, 314, 317, 671 |
| BseSI | GKGCMC | 1 cut(s) | 633 |
| BseXI | GCAGC | 3 cut(s) | 17, 19, 141 |
| BseYI | CCCAGC | 1 cut(s) | 27 |
| BshFI | GGCC | 5 cut(s) | 275, 436, 465, 631, 662 |
| BsiSI | CCGG | 1 cut(s) | 39 |
| BsmAI | GTCTC | 1 cut(s) | 457 |
| BsnI | GGCC | 5 cut(s) | 275, 436, 465, 631, 662 |
| Bso31I | GGTCTC | 1 cut(s) | 457 |
| Bsp120I | GGGCCC | 1 cut(s) | 629 |
| Bsp1286I | GDGCHC | 2 cut(s) | 390, 633 |
| Bsp143I | GATC | 2 cut(s) | 381, 647 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 227 |
| BspACI | CCGC | 3 cut(s) | 207, 234, 331 |
| BspANI | GGCC | 5 cut(s) | 275, 436, 465, 631, 662 |
| BspCNI | CTCAG | 6 cut(s) | 31, 125, 240, 480, 517, 610 |
| BspLI | GGNNCC | 2 cut(s) | 630, 631 |
| BspMAI | CTGCAG | 2 cut(s) | 131, 554 |
| BspMI | ACCTGC | 2 cut(s) | 134, 246 |
| BspTNI | GGTCTC | 1 cut(s) | 457 |
| BsrBI | CCGCTC | 1 cut(s) | 331 |
| BssECI | CCNNGG | 1 cut(s) | 467 |
| BssMI | GATC | 2 cut(s) | 381, 647 |
| BssNI | GRCGYC | 2 cut(s) | 42, 59 |
| BssT1I | CCWWGG | 1 cut(s) | 467 |
| Bst4CI | ACNGT | 1 cut(s) | 324 |
| Bst6I | CTCTTC | 2 cut(s) | 108, 140 |
| BstACI | GRCGYC | 2 cut(s) | 42, 59 |
| BstC8I | GCNNGC | 3 cut(s) | 434, 438, 550 |
| BstDEI | CTNAG | 6 cut(s) | 18, 112, 227, 488, 525, 618 |
| BstKTI | GATC | 2 cut(s) | 384, 650 |
| BstMAI | GTCTC | 1 cut(s) | 457 |
| BstMBI | GATC | 2 cut(s) | 381, 647 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 206, 637 |
| BstSCI | CCNGG | 1 cut(s) | 37 |
| BstSFI | CTRYAG | 2 cut(s) | 127, 550 |
| BstSLI | GKGCMC | 1 cut(s) | 633 |
| BstV1I | GCAGC | 3 cut(s) | 17, 19, 141 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 397, 588 |
| BsuRI | GGCC | 5 cut(s) | 275, 436, 465, 631, 662 |
| BveI | ACCTGC | 2 cut(s) | 134, 246 |
| Cac8I | GCNNGC | 3 cut(s) | 434, 438, 550 |
| Cfr13I | GGNCC | 4 cut(s) | 464, 496, 629, 630 |
| CseI | GACGC | 2 cut(s) | 31, 67 |
| Csp6I | GTAC | 2 cut(s) | 195, 259 |
| CviAII | CATG | 1 cut(s) | 289 |
| CviQI | GTAC | 2 cut(s) | 195, 259 |
| DdeI | CTNAG | 6 cut(s) | 18, 112, 227, 488, 525, 618 |
| DpnI | GATC | 2 cut(s) | 383, 649 |
| DpnII | GATC | 2 cut(s) | 381, 647 |
| EaeI | YGGCCR | 1 cut(s) | 273 |
| Eam1104I | CTCTTC | 2 cut(s) | 108, 140 |
| EarI | CTCTTC | 2 cut(s) | 108, 140 |
| EciI | GGCGGA | 1 cut(s) | 223 |
| Eco130I | CCWWGG | 1 cut(s) | 467 |
| Eco147I | AGGCCT | 1 cut(s) | 436 |
| Eco24I | GRGCYC | 2 cut(s) | 390, 633 |
| Eco31I | GGTCTC | 1 cut(s) | 457 |
| Eco47I | GGWCC | 1 cut(s) | 496 |
| EcoO109I | RGGNCCY | 2 cut(s) | 629, 630 |
| EcoT14I | CCWWGG | 1 cut(s) | 467 |
| EcoT38I | GRGCYC | 2 cut(s) | 390, 633 |
| ErhI | CCWWGG | 1 cut(s) | 467 |
| FaeI | CATG | 1 cut(s) | 292 |
| FaiI | YATR | 4 cut(s) | 290, 482, 601, 612 |
| FatI | CATG | 1 cut(s) | 288 |
| Fnu4HI | GCNGC | 5 cut(s) | 6, 33, 130, 207, 332 |
| FriOI | GRGCYC | 2 cut(s) | 390, 633 |
| Fsp4HI | GCNGC | 5 cut(s) | 6, 33, 130, 207, 332 |
| FspBI | CTAG | 2 cut(s) | 420, 533 |
| GluI | GCNGC | 5 cut(s) | 6, 33, 130, 207, 332 |
| GsaI | CCCAGC | 1 cut(s) | 31 |
| HaeIII | GGCC | 5 cut(s) | 275, 436, 465, 631, 662 |
| HapII | CCGG | 1 cut(s) | 39 |
| HgaI | GACGC | 2 cut(s) | 31, 67 |
| Hin1I | GRCGYC | 2 cut(s) | 42, 59 |
| Hin1II | CATG | 1 cut(s) | 292 |
| HinfI | GANTC | 3 cut(s) | 215, 529, 614 |
| HpaII | CCGG | 1 cut(s) | 39 |
| HphI | GGTGA | 2 cut(s) | 147, 157 |
| Hpy188I | TCNGA | 4 cut(s) | 21, 220, 511, 619 |
| Hpy188III | TCNNGA | 4 cut(s) | 314, 410, 533, 574 |
| Hpy99I | CGWCG | 3 cut(s) | 61, 206, 215 |
| HpyAV | CCTTC | 3 cut(s) | 151, 172, 643 |
| HpyCH4III | ACNGT | 1 cut(s) | 324 |
| HpyCH4V | TGCA | 2 cut(s) | 129, 552 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 206, 637 |
| HpyF3I | CTNAG | 6 cut(s) | 18, 112, 227, 488, 525, 618 |
| Hsp92I | GRCGYC | 2 cut(s) | 42, 59 |
| Hsp92II | CATG | 1 cut(s) | 292 |
| Kzo9I | GATC | 2 cut(s) | 381, 647 |
| LmnI | GCTCC | 4 cut(s) | 40, 236, 304, 316 |
| Lsp1109I | GCAGC | 3 cut(s) | 17, 19, 141 |
| LweI | GCATC | 1 cut(s) | 14 |
| MaeI | CTAG | 2 cut(s) | 420, 533 |
| MalI | GATC | 2 cut(s) | 383, 649 |
| MbiI | CCGCTC | 1 cut(s) | 331 |
| MboI | GATC | 2 cut(s) | 381, 647 |
| MboII | GAAGA | 4 cut(s) | 95, 127, 435, 548 |
| MhlI | GDGCHC | 2 cut(s) | 390, 633 |
| MlsI | TGGCCA | 1 cut(s) | 275 |
| MluNI | TGGCCA | 1 cut(s) | 275 |
| MlyI | GAGTC | 2 cut(s) | 224, 538 |
| MmeI | TCCRAC | 1 cut(s) | 581 |
| Mox20I | TGGCCA | 1 cut(s) | 275 |
| MscI | TGGCCA | 1 cut(s) | 275 |
| MseI | TTAA | 1 cut(s) | 345 |
| Msp20I | TGGCCA | 1 cut(s) | 275 |
| MspI | CCGG | 1 cut(s) | 39 |
| MspR9I | CCNGG | 1 cut(s) | 39 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 206, 637 |
| NciI | CCSGG | 1 cut(s) | 39 |
| NdeII | GATC | 2 cut(s) | 381, 647 |
| NlaIII | CATG | 1 cut(s) | 292 |
| NlaIV | GGNNCC | 2 cut(s) | 630, 631 |
| PaqCI | CACCTGC | 1 cut(s) | 134 |
| PceI | AGGCCT | 1 cut(s) | 436 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 210 |
| PfeI | GAWTC | 1 cut(s) | 614 |
| PkrI | GCNGC | 5 cut(s) | 7, 34, 131, 208, 333 |
| PleI | GAGTC | 2 cut(s) | 223, 537 |
| PpsI | GAGTC | 2 cut(s) | 223, 537 |
| PspFI | CCCAGC | 1 cut(s) | 27 |
| PspN4I | GGNNCC | 2 cut(s) | 630, 631 |
| PspOMI | GGGCCC | 1 cut(s) | 629 |
| PspPI | GGNCC | 4 cut(s) | 464, 496, 629, 630 |
| PstI | CTGCAG | 2 cut(s) | 131, 554 |
| RsaI | GTAC | 2 cut(s) | 196, 260 |
| RsaNI | GTAC | 2 cut(s) | 195, 259 |
| SaqAI | TTAA | 1 cut(s) | 345 |
| SatI | GCNGC | 5 cut(s) | 6, 33, 130, 207, 332 |
| Sau3AI | GATC | 2 cut(s) | 381, 647 |
| Sau96I | GGNCC | 4 cut(s) | 464, 496, 629, 630 |
| SchI | GAGTC | 2 cut(s) | 224, 538 |
| ScrFI | CCNGG | 1 cut(s) | 39 |
| SduI | GDGCHC | 2 cut(s) | 390, 633 |
| SetI | ASST | 9 cut(s) | 51, 118, 128, 164, 228, 233, 260, 489, 526 |
| SfaNI | GCATC | 1 cut(s) | 14 |
| SfcI | CTRYAG | 2 cut(s) | 127, 550 |
| SinI | GGWCC | 1 cut(s) | 496 |
| SseBI | AGGCCT | 1 cut(s) | 436 |
| SsiI | CCGC | 3 cut(s) | 207, 234, 331 |
| SspI | AATATT | 1 cut(s) | 565 |
| SspMI | CTAG | 2 cut(s) | 420, 533 |
| StuI | AGGCCT | 1 cut(s) | 436 |
| StyD4I | CCNGG | 1 cut(s) | 37 |
| StyI | CCWWGG | 1 cut(s) | 467 |
| TaaI | ACNGT | 1 cut(s) | 324 |
| TaqI | TCGA | 6 cut(s) | 213, 294, 327, 337, 384, 650 |
| TaqII | GACCGA | 1 cut(s) | 513 |
| TauI | GCSGC | 2 cut(s) | 209, 334 |
| TfiI | GAWTC | 1 cut(s) | 614 |
| Tru1I | TTAA | 1 cut(s) | 345 |
| Tru9I | TTAA | 1 cut(s) | 345 |
| TseI | GCWGC | 3 cut(s) | 5, 32, 129 |
| TspDTI | ATGAA | 3 cut(s) | 277, 497, 627 |
| TspGWI | ACGGA | 2 cut(s) | 178, 182 |
| VpaK11BI | GGWCC | 1 cut(s) | 496 |
| XbaI | TCTAGA | 1 cut(s) | 532 |
| XspI | CTAG | 2 cut(s) | 420, 533 |