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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 511 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 98 |
| AciI | CCGC | 5 cut(s) | 8, 17, 171, 282, 637 |
| AclWI | GGATC | 1 cut(s) | 69 |
| AcoI | YGGCCR | 1 cut(s) | 89 |
| AfaI | GTAC | 2 cut(s) | 149, 685 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 32, 98, 149, 152, 186 |
| AflIII | ACRYGT | 1 cut(s) | 448 |
| AgsI | TTSAA | 1 cut(s) | 475 |
| AjiI | CACGTC | 1 cut(s) | 159 |
| AluBI | AGCT | 2 cut(s) | 291, 498 |
| AluI | AGCT | 2 cut(s) | 291, 498 |
| Alw26I | GTCTC | 4 cut(s) | 5, 425, 547, 669 |
| AlwI | GGATC | 1 cut(s) | 69 |
| AoxI | GGCC | 4 cut(s) | 89, 205, 250, 644 |
| ApeKI | GCWGC | 4 cut(s) | 52, 112, 495, 565 |
| AspLEI | GCGC | 1 cut(s) | 140 |
| AsuC2I | CCSGG | 3 cut(s) | 27, 117, 254 |
| AsuHPI | GGTGA | 1 cut(s) | 392 |
| AxyI | CCTNAGG | 1 cut(s) | 624 |
| BanI | GGYRCC | 1 cut(s) | 511 |
| BbsI | GAAGAC | 1 cut(s) | 309 |
| BbvI | GCAGC | 4 cut(s) | 64, 99, 507, 577 |
| BccI | CCATC | 1 cut(s) | 658 |
| BceAI | ACGGC | 1 cut(s) | 30 |
| BciVI | GTATCC | 1 cut(s) | 421 |
| BclI | TGATCA | 1 cut(s) | 339 |
| BcnI | CCSGG | 3 cut(s) | 27, 117, 254 |
| BcoDI | GTCTC | 4 cut(s) | 5, 425, 547, 669 |
| BfmI | CTRYAG | 2 cut(s) | 50, 563 |
| BfoI | RGCGCY | 1 cut(s) | 141 |
| BfuI | GTATCC | 1 cut(s) | 421 |
| BisI | GCNGC | 4 cut(s) | 53, 113, 496, 566 |
| BlsI | GCNGC | 4 cut(s) | 54, 114, 497, 567 |
| Bme1390I | CCNGG | 3 cut(s) | 27, 117, 254 |
| BmgBI | CACGTC | 1 cut(s) | 159 |
| BmiI | GGNNCC | 1 cut(s) | 513 |
| BmrFI | CCNGG | 3 cut(s) | 27, 117, 254 |
| BmsI | GCATC | 1 cut(s) | 696 |
| BpiI | GAAGAC | 1 cut(s) | 309 |
| BpmI | CTGGAG | 1 cut(s) | 484 |
| BpuEI | CTTGAG | 4 cut(s) | 407, 529, 578, 662 |
| BpuMI | CCSGG | 3 cut(s) | 27, 117, 254 |
| BsaI | GGTCTC | 2 cut(s) | 425, 547 |
| BsaJI | CCNNGG | 3 cut(s) | 78, 107, 116 |
| BsaWI | WCCGGW | 1 cut(s) | 212 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 32, 98, 149, 152, 186 |
| Bse21I | CCTNAGG | 1 cut(s) | 624 |
| BseDI | CCNNGG | 3 cut(s) | 78, 107, 116 |
| BseGI | GGATG | 2 cut(s) | 493, 650 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 32, 98, 149, 152, 186 |
| BseMII | CTCAG | 2 cut(s) | 495, 638 |
| BseRI | GAGGAG | 5 cut(s) | 74, 132, 147, 216, 251 |
| BseXI | GCAGC | 4 cut(s) | 64, 99, 507, 577 |
| BseYI | CCCAGC | 1 cut(s) | 284 |
| BshFI | GGCC | 4 cut(s) | 91, 207, 252, 646 |
| BshNI | GGYRCC | 1 cut(s) | 511 |
| BsiSI | CCGG | 6 cut(s) | 26, 56, 88, 116, 213, 253 |
| BsiWI | CGTACG | 1 cut(s) | 147 |
| BslFI | GGGAC | 1 cut(s) | 27 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 32, 98, 149, 152, 186 |
| BsmAI | GTCTC | 4 cut(s) | 5, 425, 547, 669 |
| BsmBI | CGTCTC | 1 cut(s) | 5 |
| BsmFI | GGGAC | 1 cut(s) | 27 |
| BsmI | GAATGC | 1 cut(s) | 589 |
| BsnI | GGCC | 4 cut(s) | 91, 207, 252, 646 |
| Bso31I | GGTCTC | 2 cut(s) | 425, 547 |
| Bsp143I | GATC | 3 cut(s) | 74, 225, 339 |
| BspACI | CCGC | 5 cut(s) | 8, 17, 171, 282, 637 |
| BspANI | GGCC | 4 cut(s) | 91, 207, 252, 646 |
| BspCNI | CTCAG | 2 cut(s) | 494, 637 |
| BspLI | GGNNCC | 1 cut(s) | 513 |
| BspMAI | CTGCAG | 2 cut(s) | 54, 567 |
| BspPI | GGATC | 1 cut(s) | 69 |
| BspT107I | GGYRCC | 1 cut(s) | 511 |
| BspTNI | GGTCTC | 2 cut(s) | 425, 547 |
| BssECI | CCNNGG | 3 cut(s) | 78, 107, 116 |
| BssMI | GATC | 3 cut(s) | 74, 225, 339 |
| BssT1I | CCWWGG | 1 cut(s) | 107 |
| Bst4CI | ACNGT | 1 cut(s) | 152 |
| BstC8I | GCNNGC | 1 cut(s) | 570 |
| BstDEI | CTNAG | 2 cut(s) | 481, 624 |
| BstDSI | CCRYGG | 1 cut(s) | 78 |
| BstF5I | GGATG | 2 cut(s) | 493, 650 |
| BstH2I | RGCGCY | 1 cut(s) | 141 |
| BstHHI | GCGC | 1 cut(s) | 140 |
| BstKTI | GATC | 3 cut(s) | 77, 228, 342 |
| BstMAI | GTCTC | 4 cut(s) | 5, 425, 547, 669 |
| BstMBI | GATC | 3 cut(s) | 74, 225, 339 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 14, 643 |
| BstNSI | RCATGY | 1 cut(s) | 452 |
| BstSCI | CCNGG | 3 cut(s) | 25, 115, 252 |
| BstSFI | CTRYAG | 2 cut(s) | 50, 563 |
| BstV1I | GCAGC | 4 cut(s) | 64, 99, 507, 577 |
| BstV2I | GAAGAC | 1 cut(s) | 309 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 508 |
| Bsu36I | CCTNAGG | 1 cut(s) | 624 |
| BsuI | GTATCC | 1 cut(s) | 421 |
| BsuRI | GGCC | 4 cut(s) | 91, 207, 252, 646 |
| BtgI | CCRYGG | 1 cut(s) | 78 |
| BtrI | CACGTC | 1 cut(s) | 159 |
| BtsCI | GGATG | 2 cut(s) | 493, 650 |
| Cac8I | GCNNGC | 1 cut(s) | 570 |
| CfoI | GCGC | 1 cut(s) | 140 |
| Csp6I | GTAC | 2 cut(s) | 148, 684 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 534, 569 |
| CviAII | CATG | 2 cut(s) | 449, 659 |
| CviJI | RGCY | 9 cut(s) | 55, 91, 112, 207, 252, 291, 439, 498, 646 |
| CviKI_1 | RGCY | 9 cut(s) | 55, 91, 112, 207, 252, 291, 439, 498, 646 |
| CviQI | GTAC | 2 cut(s) | 148, 684 |
| DdeI | CTNAG | 2 cut(s) | 481, 624 |
| DpnI | GATC | 3 cut(s) | 76, 227, 341 |
| DpnII | GATC | 3 cut(s) | 74, 225, 339 |
| EaeI | YGGCCR | 1 cut(s) | 89 |
| EciI | GGCGGA | 3 cut(s) | 23, 32, 186 |
| Eco130I | CCWWGG | 1 cut(s) | 107 |
| Eco147I | AGGCCT | 1 cut(s) | 646 |
| Eco31I | GGTCTC | 2 cut(s) | 425, 547 |
| Eco81I | CCTNAGG | 1 cut(s) | 624 |
| EcoT14I | CCWWGG | 1 cut(s) | 107 |
| EcoT22I | ATGCAT | 1 cut(s) | 711 |
| ErhI | CCWWGG | 1 cut(s) | 107 |
| Esp3I | CGTCTC | 1 cut(s) | 5 |
| FaeI | CATG | 2 cut(s) | 452, 662 |
| FaiI | YATR | 4 cut(s) | 165, 308, 450, 660 |
| FaqI | GGGAC | 1 cut(s) | 27 |
| FatI | CATG | 2 cut(s) | 448, 658 |
| FauI | CCCGC | 2 cut(s) | 289, 630 |
| FbaI | TGATCA | 1 cut(s) | 339 |
| Fnu4HI | GCNGC | 4 cut(s) | 53, 113, 496, 566 |
| FokI | GGATG | 2 cut(s) | 500, 637 |
| Fsp4HI | GCNGC | 4 cut(s) | 53, 113, 496, 566 |
| GlaI | GCGC | 1 cut(s) | 139 |
| GluI | GCNGC | 4 cut(s) | 53, 113, 496, 566 |
| GsaI | CCCAGC | 1 cut(s) | 288 |
| GsuI | CTGGAG | 1 cut(s) | 484 |
| HaeII | RGCGCY | 1 cut(s) | 141 |
| HaeIII | GGCC | 4 cut(s) | 91, 207, 252, 646 |
| HapII | CCGG | 6 cut(s) | 26, 56, 88, 116, 213, 253 |
| HhaI | GCGC | 1 cut(s) | 140 |
| Hin1II | CATG | 2 cut(s) | 452, 662 |
| Hin6I | GCGC | 1 cut(s) | 138 |
| HinP1I | GCGC | 1 cut(s) | 138 |
| HinfI | GANTC | 3 cut(s) | 20, 30, 174 |
| HpaII | CCGG | 6 cut(s) | 26, 56, 88, 116, 213, 253 |
| HphI | GGTGA | 1 cut(s) | 392 |
| Hpy166II | GTNNAC | 1 cut(s) | 383 |
| Hpy188I | TCNGA | 6 cut(s) | 127, 189, 266, 461, 538, 705 |
| Hpy188III | TCNNGA | 3 cut(s) | 331, 501, 679 |
| Hpy8I | GTNNAC | 1 cut(s) | 383 |
| Hpy99I | CGWCG | 1 cut(s) | 583 |
| HpyAV | CCTTC | 3 cut(s) | 191, 599, 636 |
| HpyCH4III | ACNGT | 1 cut(s) | 152 |
| HpyCH4IV | ACGT | 1 cut(s) | 158 |
| HpyCH4V | TGCA | 6 cut(s) | 52, 296, 356, 565, 587, 709 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 14, 643 |
| HpyF3I | CTNAG | 2 cut(s) | 481, 624 |
| HpySE526I | ACGT | 1 cut(s) | 158 |
| Hsp92II | CATG | 2 cut(s) | 452, 662 |
| HspAI | GCGC | 1 cut(s) | 138 |
| Ksp22I | TGATCA | 1 cut(s) | 339 |
| Kzo9I | GATC | 3 cut(s) | 74, 225, 339 |
| LmnI | GCTCC | 3 cut(s) | 145, 288, 503 |
| Lsp1109I | GCAGC | 4 cut(s) | 64, 99, 507, 577 |
| LweI | GCATC | 1 cut(s) | 696 |
| MaeII | ACGT | 1 cut(s) | 158 |
| MalI | GATC | 3 cut(s) | 76, 227, 341 |
| MboI | GATC | 3 cut(s) | 74, 225, 339 |
| MboII | GAAGA | 1 cut(s) | 314 |
| MluCI | AATT | 3 cut(s) | 399, 532, 715 |
| Mph1103I | ATGCAT | 1 cut(s) | 711 |
| MseI | TTAA | 1 cut(s) | 718 |
| MspA1I | CMGCKG | 1 cut(s) | 284 |
| MspI | CCGG | 6 cut(s) | 26, 56, 88, 116, 213, 253 |
| MspR9I | CCNGG | 3 cut(s) | 27, 117, 254 |
| Mva1269I | GAATGC | 1 cut(s) | 589 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 14, 643 |
| NciI | CCSGG | 3 cut(s) | 27, 117, 254 |
| NdeII | GATC | 3 cut(s) | 74, 225, 339 |
| NlaIII | CATG | 2 cut(s) | 452, 662 |
| NlaIV | GGNNCC | 1 cut(s) | 513 |
| NsiI | ATGCAT | 1 cut(s) | 711 |
| NspI | RCATGY | 1 cut(s) | 452 |
| PceI | AGGCCT | 1 cut(s) | 646 |
| PciI | ACATGT | 1 cut(s) | 448 |
| PctI | GAATGC | 1 cut(s) | 589 |
| PfeI | GAWTC | 3 cut(s) | 20, 30, 174 |
| Pfl23II | CGTACG | 1 cut(s) | 147 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 98 |
| PkrI | GCNGC | 4 cut(s) | 54, 114, 497, 567 |
| PscI | ACATGT | 1 cut(s) | 448 |
| PspFI | CCCAGC | 1 cut(s) | 284 |
| PspLI | CGTACG | 1 cut(s) | 147 |
| PspN4I | GGNNCC | 1 cut(s) | 513 |
| PstI | CTGCAG | 2 cut(s) | 54, 567 |
| RsaI | GTAC | 2 cut(s) | 149, 685 |
| RsaNI | GTAC | 2 cut(s) | 148, 684 |
| SaqAI | TTAA | 1 cut(s) | 718 |
| SatI | GCNGC | 4 cut(s) | 53, 113, 496, 566 |
| Sau3AI | GATC | 3 cut(s) | 74, 225, 339 |
| ScrFI | CCNGG | 3 cut(s) | 27, 117, 254 |
| SfaNI | GCATC | 1 cut(s) | 696 |
| SfcI | CTRYAG | 2 cut(s) | 50, 563 |
| SmlI | CTYRAG | 4 cut(s) | 422, 544, 593, 677 |
| SmoI | CTYRAG | 4 cut(s) | 422, 544, 593, 677 |
| Sse9I | AATT | 3 cut(s) | 399, 532, 715 |
| SseBI | AGGCCT | 1 cut(s) | 646 |
| SsiI | CCGC | 5 cut(s) | 8, 17, 171, 282, 637 |
| StuI | AGGCCT | 1 cut(s) | 646 |
| StyD4I | CCNGG | 3 cut(s) | 25, 115, 252 |
| StyI | CCWWGG | 1 cut(s) | 107 |
| TaaI | ACNGT | 1 cut(s) | 152 |
| TaiI | ACGT | 1 cut(s) | 161 |
| TaqI | TCGA | 2 cut(s) | 73, 442 |
| TasI | AATT | 3 cut(s) | 399, 532, 715 |
| TatI | WGTACW | 1 cut(s) | 683 |
| TfiI | GAWTC | 3 cut(s) | 20, 30, 174 |
| Tru1I | TTAA | 1 cut(s) | 718 |
| Tru9I | TTAA | 1 cut(s) | 718 |
| TseI | GCWGC | 4 cut(s) | 52, 112, 495, 565 |
| TspGWI | ACGGA | 2 cut(s) | 67, 135 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 98 |
| XceI | RCATGY | 1 cut(s) | 452 |
| Zsp2I | ATGCAT | 1 cut(s) | 711 |