isoform X1
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 188 |
| AccB1I | GGYRCC | 3 cut(s) | 475, 499, 726 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 550 |
| AccI | GTMKAC | 1 cut(s) | 697 |
| AccII | CGCG | 1 cut(s) | 795 |
| AciI | CCGC | 5 cut(s) | 730, 736, 793, 795, 799 |
| AcoI | YGGCCR | 1 cut(s) | 796 |
| AcsI | RAATTY | 1 cut(s) | 506 |
| AcuI | CTGAAG | 2 cut(s) | 97, 695 |
| AcyI | GRCGYC | 1 cut(s) | 727 |
| AfaI | GTAC | 6 cut(s) | 60, 133, 322, 625, 754, 835 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 311, 550 |
| AgeI | ACCGGT | 1 cut(s) | 478 |
| AgsI | TTSAA | 3 cut(s) | 18, 613, 922 |
| AjnI | CCWGG | 1 cut(s) | 851 |
| AluBI | AGCT | 8 cut(s) | 111, 117, 298, 491, 515, 533, 631, 673 |
| AluI | AGCT | 8 cut(s) | 111, 117, 298, 491, 515, 533, 631, 673 |
| Alw21I | GWGCWC | 1 cut(s) | 157 |
| Alw44I | GTGCAC | 1 cut(s) | 153 |
| Ama87I | CYCGRG | 1 cut(s) | 558 |
| AoxI | GGCC | 3 cut(s) | 541, 578, 796 |
| ApaLI | GTGCAC | 1 cut(s) | 153 |
| ApeKI | GCWGC | 3 cut(s) | 488, 512, 526 |
| ApoI | RAATTY | 1 cut(s) | 506 |
| AseI | ATTAAT | 1 cut(s) | 402 |
| AsiGI | ACCGGT | 1 cut(s) | 478 |
| AspLEI | GCGC | 2 cut(s) | 189, 729 |
| AspS9I | GGNCC | 1 cut(s) | 900 |
| AsuC2I | CCSGG | 1 cut(s) | 831 |
| AsuHPI | GGTGA | 2 cut(s) | 757, 774 |
| AsuII | TTCGAA | 1 cut(s) | 932 |
| AvaI | CYCGRG | 1 cut(s) | 558 |
| AvaII | GGWCC | 1 cut(s) | 900 |
| AxyI | CCTNAGG | 1 cut(s) | 282 |
| BaeGI | GKGCMC | 1 cut(s) | 157 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 736, 769 |
| BanI | GGYRCC | 3 cut(s) | 475, 499, 726 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 568, 600 |
| BauI | CACGAG | 1 cut(s) | 150 |
| BbsI | GAAGAC | 3 cut(s) | 401, 697, 885 |
| Bbv12I | GWGCWC | 1 cut(s) | 157 |
| BbvI | GCAGC | 3 cut(s) | 500, 524, 538 |
| BccI | CCATC | 4 cut(s) | 313, 455, 793, 836 |
| BceAI | ACGGC | 2 cut(s) | 735, 740 |
| BciT130I | CCWGG | 1 cut(s) | 853 |
| BcnI | CCSGG | 1 cut(s) | 831 |
| BfaI | CTAG | 4 cut(s) | 368, 639, 771, 937 |
| BfmI | CTRYAG | 2 cut(s) | 342, 745 |
| BfoI | RGCGCY | 1 cut(s) | 730 |
| BisI | GCNGC | 6 cut(s) | 489, 513, 527, 730, 796, 799 |
| BlsI | GCNGC | 6 cut(s) | 490, 514, 528, 731, 797, 800 |
| BmcAI | AGTACT | 1 cut(s) | 625 |
| Bme1390I | CCNGG | 2 cut(s) | 831, 853 |
| Bme18I | GGWCC | 1 cut(s) | 900 |
| BmeT110I | CYCGRG | 1 cut(s) | 558 |
| BmgT120I | GGNCC | 1 cut(s) | 900 |
| BmiI | GGNNCC | 4 cut(s) | 258, 477, 501, 728 |
| BmrFI | CCNGG | 2 cut(s) | 831, 853 |
| BmrI | ACTGGG | 1 cut(s) | 626 |
| BmsI | GCATC | 3 cut(s) | 163, 361, 669 |
| BmuI | ACTGGG | 1 cut(s) | 626 |
| BpiI | GAAGAC | 3 cut(s) | 401, 697, 885 |
| Bpu14I | TTCGAA | 1 cut(s) | 932 |
| BpuMI | CCSGG | 1 cut(s) | 831 |
| BsaBI | GATNNNNATC | 1 cut(s) | 83 |
| BsaHI | GRCGYC | 1 cut(s) | 727 |
| BsaJI | CCNNGG | 3 cut(s) | 645, 709, 793 |
| BsaWI | WCCGGW | 1 cut(s) | 478 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 583, 613 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 311, 550 |
| Bse118I | RCCGGY | 1 cut(s) | 478 |
| Bse1I | ACTGG | 3 cut(s) | 194, 621, 701 |
| Bse21I | CCTNAGG | 1 cut(s) | 282 |
| Bse3DI | GCAATG | 1 cut(s) | 808 |
| Bse8I | GATNNNNATC | 1 cut(s) | 83 |
| BseBI | CCWGG | 1 cut(s) | 853 |
| BseDI | CCNNGG | 3 cut(s) | 645, 709, 793 |
| BseGI | GGATG | 3 cut(s) | 466, 655, 874 |
| BseJI | GATNNNNATC | 1 cut(s) | 83 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 311, 550 |
| BseMI | GCAATG | 1 cut(s) | 808 |
| BseMII | CTCAG | 2 cut(s) | 300, 618 |
| BseNI | ACTGG | 3 cut(s) | 194, 621, 701 |
| BseSI | GKGCMC | 1 cut(s) | 157 |
| BseX3I | CGGCCG | 1 cut(s) | 796 |
| BseXI | GCAGC | 3 cut(s) | 500, 524, 538 |
| BsgI | GTGCAG | 1 cut(s) | 545 |
| Bsh1236I | CGCG | 1 cut(s) | 795 |
| Bsh1285I | CGRYCG | 1 cut(s) | 799 |
| BshFI | GGCC | 3 cut(s) | 543, 580, 798 |
| BshNI | GGYRCC | 3 cut(s) | 475, 499, 726 |
| BshTI | ACCGGT | 1 cut(s) | 478 |
| BsiEI | CGRYCG | 1 cut(s) | 799 |
| BsiHKAI | GWGCWC | 1 cut(s) | 157 |
| BsiHKCI | CYCGRG | 1 cut(s) | 558 |
| BsiSI | CCGG | 3 cut(s) | 479, 503, 830 |
| BslFI | GGGAC | 2 cut(s) | 127, 350 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 311, 550 |
| BsmFI | GGGAC | 2 cut(s) | 127, 350 |
| BsmI | GAATGC | 1 cut(s) | 358 |
| BsnI | GGCC | 3 cut(s) | 543, 580, 798 |
| BsoBI | CYCGRG | 1 cut(s) | 558 |
| Bsp119I | TTCGAA | 1 cut(s) | 932 |
| Bsp1286I | GDGCHC | 1 cut(s) | 157 |
| Bsp19I | CCATGG | 1 cut(s) | 645 |
| BspACI | CCGC | 5 cut(s) | 730, 736, 793, 795, 799 |
| BspANI | GGCC | 3 cut(s) | 543, 580, 798 |
| BspCNI | CTCAG | 2 cut(s) | 301, 619 |
| BspFNI | CGCG | 1 cut(s) | 795 |
| BspLI | GGNNCC | 4 cut(s) | 258, 477, 501, 728 |
| BspT104I | TTCGAA | 1 cut(s) | 932 |
| BspT107I | GGYRCC | 3 cut(s) | 475, 499, 726 |
| BsrDI | GCAATG | 1 cut(s) | 808 |
| BsrFI | RCCGGY | 1 cut(s) | 478 |
| BsrI | ACTGG | 3 cut(s) | 194, 621, 701 |
| BssAI | RCCGGY | 1 cut(s) | 478 |
| BssECI | CCNNGG | 3 cut(s) | 645, 709, 793 |
| BssNI | GRCGYC | 1 cut(s) | 727 |
| BssSI | CACGAG | 1 cut(s) | 150 |
| BssT1I | CCWWGG | 2 cut(s) | 645, 709 |
| Bst2BI | CACGAG | 1 cut(s) | 150 |
| Bst2UI | CCWGG | 1 cut(s) | 853 |
| Bst4CI | ACNGT | 5 cut(s) | 22, 379, 499, 523, 595 |
| BstACI | GRCGYC | 1 cut(s) | 727 |
| BstBI | TTCGAA | 1 cut(s) | 932 |
| BstC8I | GCNNGC | 2 cut(s) | 467, 531 |
| BstDEI | CTNAG | 4 cut(s) | 282, 309, 603, 627 |
| BstDSI | CCRYGG | 2 cut(s) | 645, 793 |
| BstF5I | GGATG | 3 cut(s) | 466, 655, 874 |
| BstFNI | CGCG | 1 cut(s) | 795 |
| BstH2I | RGCGCY | 1 cut(s) | 730 |
| BstHHI | GCGC | 2 cut(s) | 189, 729 |
| BstMCI | CGRYCG | 1 cut(s) | 799 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 679, 735 |
| BstNI | CCWGG | 1 cut(s) | 853 |
| BstSCI | CCNGG | 2 cut(s) | 829, 851 |
| BstSFI | CTRYAG | 2 cut(s) | 342, 745 |
| BstSLI | GKGCMC | 1 cut(s) | 157 |
| BstUI | CGCG | 1 cut(s) | 795 |
| BstV1I | GCAGC | 3 cut(s) | 500, 524, 538 |
| BstV2I | GAAGAC | 3 cut(s) | 401, 697, 885 |
| BstZI | CGGCCG | 1 cut(s) | 796 |
| Bsu36I | CCTNAGG | 1 cut(s) | 282 |
| BsuRI | GGCC | 3 cut(s) | 543, 580, 798 |
| BtgI | CCRYGG | 2 cut(s) | 645, 793 |
| BtsCI | GGATG | 3 cut(s) | 466, 655, 874 |
| BtsI | GCAGTG | 1 cut(s) | 447 |
| BtsIMutI | CAGTG | 3 cut(s) | 201, 447, 528 |
| Cac8I | GCNNGC | 2 cut(s) | 467, 531 |
| CciNI | GCGGCCGC | 1 cut(s) | 796 |
| CfoI | GCGC | 2 cut(s) | 189, 729 |
| Cfr10I | RCCGGY | 1 cut(s) | 478 |
| Cfr13I | GGNCC | 1 cut(s) | 900 |
| Cfr42I | CCGCGG | 1 cut(s) | 796 |
| Csp6I | GTAC | 6 cut(s) | 59, 132, 321, 624, 753, 834 |
| CspAI | ACCGGT | 1 cut(s) | 478 |
| CviAII | CATG | 3 cut(s) | 104, 419, 646 |
| CviQI | GTAC | 6 cut(s) | 59, 132, 321, 624, 753, 834 |
| DdeI | CTNAG | 4 cut(s) | 282, 309, 603, 627 |
| DinI | GGCGCC | 1 cut(s) | 728 |
| DraI | TTTAAA | 1 cut(s) | 121 |
| EaeI | YGGCCR | 1 cut(s) | 796 |
| EagI | CGGCCG | 1 cut(s) | 796 |
| EclXI | CGGCCG | 1 cut(s) | 796 |
| Eco130I | CCWWGG | 2 cut(s) | 645, 709 |
| Eco147I | AGGCCT | 1 cut(s) | 580 |
| Eco32I | GATATC | 1 cut(s) | 658 |
| Eco47I | GGWCC | 1 cut(s) | 900 |
| Eco52I | CGGCCG | 1 cut(s) | 796 |
| Eco57I | CTGAAG | 2 cut(s) | 97, 695 |
| Eco81I | CCTNAGG | 1 cut(s) | 282 |
| Eco88I | CYCGRG | 1 cut(s) | 558 |
| EcoRII | CCWGG | 1 cut(s) | 851 |
| EcoRV | GATATC | 1 cut(s) | 658 |
| EcoT14I | CCWWGG | 2 cut(s) | 645, 709 |
| EcoT22I | ATGCAT | 1 cut(s) | 358 |
| EgeI | GGCGCC | 1 cut(s) | 728 |
| EheI | GGCGCC | 1 cut(s) | 728 |
| ErhI | CCWWGG | 2 cut(s) | 645, 709 |
| FaeI | CATG | 3 cut(s) | 107, 422, 649 |
| FaiI | YATR | 7 cut(s) | 105, 302, 317, 358, 420, 647, 888 |
| FaqI | GGGAC | 2 cut(s) | 127, 350 |
| FatI | CATG | 3 cut(s) | 103, 418, 645 |
| FblI | GTMKAC | 1 cut(s) | 697 |
| Fnu4HI | GCNGC | 6 cut(s) | 489, 513, 527, 730, 796, 799 |
| FokI | GGATG | 3 cut(s) | 473, 662, 881 |
| Fsp4HI | GCNGC | 6 cut(s) | 489, 513, 527, 730, 796, 799 |
| FspBI | CTAG | 4 cut(s) | 368, 639, 771, 937 |
| FspI | TGCGCA | 1 cut(s) | 188 |
| GlaI | GCGC | 2 cut(s) | 188, 728 |
| GluI | GCNGC | 6 cut(s) | 489, 513, 527, 730, 796, 799 |
| HaeII | RGCGCY | 1 cut(s) | 730 |
| HaeIII | GGCC | 3 cut(s) | 543, 580, 798 |
| HapII | CCGG | 3 cut(s) | 479, 503, 830 |
| HhaI | GCGC | 2 cut(s) | 189, 729 |
| Hin1I | GRCGYC | 1 cut(s) | 727 |
| Hin1II | CATG | 3 cut(s) | 107, 422, 649 |
| Hin6I | GCGC | 2 cut(s) | 187, 727 |
| HinP1I | GCGC | 2 cut(s) | 187, 727 |
| HincII | GTYRAC | 1 cut(s) | 388 |
| HindII | GTYRAC | 1 cut(s) | 388 |
| HinfI | GANTC | 3 cut(s) | 338, 694, 881 |
| HpaII | CCGG | 3 cut(s) | 479, 503, 830 |
| HphI | GGTGA | 2 cut(s) | 757, 774 |
| Hpy166II | GTNNAC | 5 cut(s) | 155, 245, 388, 698, 782 |
| Hpy188I | TCNGA | 4 cut(s) | 229, 261, 310, 904 |
| Hpy188III | TCNNGA | 1 cut(s) | 76 |
| Hpy8I | GTNNAC | 5 cut(s) | 155, 245, 388, 698, 782 |
| HpyAV | CCTTC | 5 cut(s) | 24, 226, 533, 591, 899 |
| HpyCH4III | ACNGT | 5 cut(s) | 22, 379, 499, 523, 595 |
| HpyCH4V | TGCA | 8 cut(s) | 40, 103, 155, 293, 328, 356, 512, 526 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 679, 735 |
| HpyF3I | CTNAG | 4 cut(s) | 282, 309, 603, 627 |
| Hsp92I | GRCGYC | 1 cut(s) | 727 |
| Hsp92II | CATG | 3 cut(s) | 107, 422, 649 |
| HspAI | GCGC | 2 cut(s) | 187, 727 |
| KasI | GGCGCC | 1 cut(s) | 726 |
| KspI | CCGCGG | 1 cut(s) | 796 |
| LmnI | GCTCC | 1 cut(s) | 108 |
| Lsp1109I | GCAGC | 3 cut(s) | 500, 524, 538 |
| LweI | GCATC | 3 cut(s) | 163, 361, 669 |
| MaeI | CTAG | 4 cut(s) | 368, 639, 771, 937 |
| MaeIII | GTNAC | 1 cut(s) | 763 |
| MboII | GAAGA | 7 cut(s) | 406, 576, 688, 697, 887, 890, 904 |
| MhlI | GDGCHC | 1 cut(s) | 157 |
| MluCI | AATT | 4 cut(s) | 67, 399, 506, 684 |
| Mly113I | GGCGCC | 1 cut(s) | 727 |
| MlyI | GAGTC | 3 cut(s) | 332, 703, 875 |
| MnlI | CCTC | 7 cut(s) | 21, 155, 159, 280, 304, 646, 919 |
| Mph1103I | ATGCAT | 1 cut(s) | 358 |
| MseI | TTAA | 5 cut(s) | 24, 120, 402, 564, 687 |
| MspA1I | CMGCKG | 1 cut(s) | 795 |
| MspI | CCGG | 3 cut(s) | 479, 503, 830 |
| MspR9I | CCNGG | 2 cut(s) | 831, 853 |
| Mva1269I | GAATGC | 1 cut(s) | 358 |
| MvaI | CCWGG | 1 cut(s) | 853 |
| MvnI | CGCG | 1 cut(s) | 795 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 679, 735 |
| NarI | GGCGCC | 1 cut(s) | 727 |
| NciI | CCSGG | 1 cut(s) | 831 |
| NcoI | CCATGG | 1 cut(s) | 645 |
| NlaIII | CATG | 3 cut(s) | 107, 422, 649 |
| NlaIV | GGNNCC | 4 cut(s) | 258, 477, 501, 728 |
| NmuCI | GTSAC | 1 cut(s) | 763 |
| NotI | GCGGCCGC | 1 cut(s) | 796 |
| NsbI | TGCGCA | 1 cut(s) | 188 |
| NsiI | ATGCAT | 1 cut(s) | 358 |
| NspV | TTCGAA | 1 cut(s) | 932 |
| PaeR7I | CTCGAG | 1 cut(s) | 558 |
| PceI | AGGCCT | 1 cut(s) | 580 |
| PctI | GAATGC | 1 cut(s) | 358 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 550 |
| PinAI | ACCGGT | 1 cut(s) | 478 |
| PkrI | GCNGC | 6 cut(s) | 490, 514, 528, 731, 797, 800 |
| PleI | GAGTC | 3 cut(s) | 332, 702, 875 |
| PluTI | GGCGCC | 1 cut(s) | 730 |
| PpsI | GAGTC | 3 cut(s) | 332, 702, 875 |
| PshBI | ATTAAT | 1 cut(s) | 402 |
| Psp6I | CCWGG | 1 cut(s) | 851 |
| PspGI | CCWGG | 1 cut(s) | 851 |
| PspN4I | GGNNCC | 4 cut(s) | 258, 477, 501, 728 |
| PspPI | GGNCC | 1 cut(s) | 900 |
| PspXI | VCTCGAGB | 1 cut(s) | 558 |
| RsaI | GTAC | 6 cut(s) | 60, 133, 322, 625, 754, 835 |
| RsaNI | GTAC | 6 cut(s) | 59, 132, 321, 624, 753, 834 |
| SacII | CCGCGG | 1 cut(s) | 796 |
| SaqAI | TTAA | 5 cut(s) | 24, 120, 402, 564, 687 |
| SatI | GCNGC | 6 cut(s) | 489, 513, 527, 730, 796, 799 |
| Sau96I | GGNCC | 1 cut(s) | 900 |
| ScaI | AGTACT | 1 cut(s) | 625 |
| SchI | GAGTC | 3 cut(s) | 332, 703, 875 |
| ScrFI | CCNGG | 2 cut(s) | 831, 853 |
| SduI | GDGCHC | 1 cut(s) | 157 |
| SfaNI | GCATC | 3 cut(s) | 163, 361, 669 |
| SfcI | CTRYAG | 2 cut(s) | 342, 745 |
| SfoI | GGCGCC | 1 cut(s) | 728 |
| Sfr274I | CTCGAG | 1 cut(s) | 558 |
| Sfr303I | CCGCGG | 1 cut(s) | 796 |
| SfuI | TTCGAA | 1 cut(s) | 932 |
| SgrBI | CCGCGG | 1 cut(s) | 796 |
| SinI | GGWCC | 1 cut(s) | 900 |
| SlaI | CTCGAG | 1 cut(s) | 558 |
| SmlI | CTYRAG | 1 cut(s) | 558 |
| SmoI | CTYRAG | 1 cut(s) | 558 |
| Sse9I | AATT | 4 cut(s) | 67, 399, 506, 684 |
| SseBI | AGGCCT | 1 cut(s) | 580 |
| SsiI | CCGC | 5 cut(s) | 730, 736, 793, 795, 799 |
| SspDI | GGCGCC | 1 cut(s) | 726 |
| SspI | AATATT | 2 cut(s) | 274, 913 |
| SspMI | CTAG | 4 cut(s) | 368, 639, 771, 937 |
| StuI | AGGCCT | 1 cut(s) | 580 |
| StyD4I | CCNGG | 2 cut(s) | 829, 851 |
| StyI | CCWWGG | 2 cut(s) | 645, 709 |
| TaaI | ACNGT | 5 cut(s) | 22, 379, 499, 523, 595 |
| TaqI | TCGA | 2 cut(s) | 559, 932 |
| TasI | AATT | 4 cut(s) | 67, 399, 506, 684 |
| TatI | WGTACW | 3 cut(s) | 58, 320, 623 |
| TauI | GCSGC | 3 cut(s) | 732, 798, 801 |
| Tru1I | TTAA | 5 cut(s) | 24, 120, 402, 564, 687 |
| Tru9I | TTAA | 5 cut(s) | 24, 120, 402, 564, 687 |
| TscAI | CASTG | 3 cut(s) | 201, 454, 528 |
| TseFI | GTSAC | 1 cut(s) | 763 |
| TseI | GCWGC | 3 cut(s) | 488, 512, 526 |
| Tsp45I | GTSAC | 1 cut(s) | 763 |
| TspDTI | ATGAA | 1 cut(s) | 888 |
| TspRI | CASTG | 3 cut(s) | 201, 454, 528 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 550 |
| VneI | GTGCAC | 1 cut(s) | 153 |
| VpaK11BI | GGWCC | 1 cut(s) | 900 |
| VspI | ATTAAT | 1 cut(s) | 402 |
| XapI | RAATTY | 1 cut(s) | 506 |
| XhoI | CTCGAG | 1 cut(s) | 558 |
| XmiI | GTMKAC | 1 cut(s) | 697 |
| XspI | CTAG | 4 cut(s) | 368, 639, 771, 937 |
| ZrmI | AGTACT | 1 cut(s) | 625 |
| Zsp2I | ATGCAT | 1 cut(s) | 358 |