Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 190 |
| AatII | GACGTC | 1 cut(s) | 391 |
| Acc36I | ACCTGC | 1 cut(s) | 190 |
| AccB1I | GGYRCC | 1 cut(s) | 526 |
| AciI | CCGC | 1 cut(s) | 125 |
| AclWI | GGATC | 2 cut(s) | 116, 129 |
| AcsI | RAATTY | 4 cut(s) | 533, 545, 588, 774 |
| AcuI | CTGAAG | 3 cut(s) | 53, 444, 729 |
| AcyI | GRCGYC | 1 cut(s) | 388 |
| AfaI | GTAC | 4 cut(s) | 74, 93, 328, 457 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 280, 574, 605 |
| AgsI | TTSAA | 1 cut(s) | 670 |
| AjnI | CCWGG | 1 cut(s) | 580 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 300, 332 |
| AluBI | AGCT | 4 cut(s) | 256, 446, 473, 521 |
| AluI | AGCT | 4 cut(s) | 256, 446, 473, 521 |
| Alw21I | GWGCWC | 1 cut(s) | 367 |
| Alw26I | GTCTC | 1 cut(s) | 564 |
| AlwI | GGATC | 2 cut(s) | 116, 129 |
| AoxI | GGCC | 3 cut(s) | 271, 419, 565 |
| ApeKI | GCWGC | 2 cut(s) | 97, 473 |
| ApoI | RAATTY | 4 cut(s) | 533, 545, 588, 774 |
| AspS9I | GGNCC | 2 cut(s) | 65, 608 |
| AsuHPI | GGTGA | 1 cut(s) | 13 |
| AsuNHI | GCTAGC | 1 cut(s) | 442 |
| AvaII | GGWCC | 2 cut(s) | 65, 608 |
| AxyI | CCTNAGG | 1 cut(s) | 600 |
| BamHI | GGATCC | 1 cut(s) | 121 |
| BanI | GGYRCC | 1 cut(s) | 526 |
| BbsI | GAAGAC | 1 cut(s) | 630 |
| Bbv12I | GWGCWC | 1 cut(s) | 367 |
| BbvI | GCAGC | 2 cut(s) | 84, 460 |
| BccI | CCATC | 2 cut(s) | 104, 509 |
| BciT130I | CCWGG | 1 cut(s) | 582 |
| BciVI | GTATCC | 1 cut(s) | 145 |
| BclI | TGATCA | 2 cut(s) | 247, 636 |
| BcoDI | GTCTC | 1 cut(s) | 564 |
| BfaI | CTAG | 5 cut(s) | 188, 443, 662, 735, 753 |
| BfuAI | ACCTGC | 1 cut(s) | 190 |
| BfuI | GTATCC | 1 cut(s) | 145 |
| BisI | GCNGC | 2 cut(s) | 98, 474 |
| BlsI | GCNGC | 2 cut(s) | 99, 475 |
| Bme1390I | CCNGG | 1 cut(s) | 582 |
| Bme18I | GGWCC | 2 cut(s) | 65, 608 |
| BmgT120I | GGNCC | 2 cut(s) | 65, 608 |
| BmiI | GGNNCC | 3 cut(s) | 123, 528, 579 |
| BmrFI | CCNGG | 1 cut(s) | 582 |
| BmsI | GCATC | 1 cut(s) | 244 |
| BmtI | GCTAGC | 1 cut(s) | 446 |
| BpiI | GAAGAC | 1 cut(s) | 630 |
| BpmI | CTGGAG | 1 cut(s) | 564 |
| Bpu10I | CCTNAGC | 1 cut(s) | 522 |
| BsaBI | GATNNNNATC | 1 cut(s) | 246 |
| BsaHI | GRCGYC | 1 cut(s) | 388 |
| BsaJI | CCNNGG | 1 cut(s) | 68 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 280, 574, 605 |
| Bse21I | CCTNAGG | 1 cut(s) | 600 |
| Bse8I | GATNNNNATC | 1 cut(s) | 246 |
| BseBI | CCWGG | 1 cut(s) | 582 |
| BseDI | CCNNGG | 1 cut(s) | 68 |
| BseJI | GATNNNNATC | 1 cut(s) | 246 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 280, 574, 605 |
| BseMII | CTCAG | 1 cut(s) | 710 |
| BseXI | GCAGC | 2 cut(s) | 84, 460 |
| BseYI | CCCAGC | 1 cut(s) | 4 |
| BshFI | GGCC | 3 cut(s) | 273, 421, 567 |
| BshNI | GGYRCC | 1 cut(s) | 526 |
| BsiHKAI | GWGCWC | 1 cut(s) | 367 |
| BsiSI | CCGG | 1 cut(s) | 530 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 280, 574, 605 |
| BsmAI | GTCTC | 1 cut(s) | 564 |
| BsnI | GGCC | 3 cut(s) | 273, 421, 567 |
| Bsp1286I | GDGCHC | 1 cut(s) | 367 |
| Bsp143I | GATC | 4 cut(s) | 40, 121, 247, 636 |
| Bsp19I | CCATGG | 1 cut(s) | 68 |
| BspACI | CCGC | 1 cut(s) | 125 |
| BspANI | GGCC | 3 cut(s) | 273, 421, 567 |
| BspCNI | CTCAG | 1 cut(s) | 711 |
| BspLI | GGNNCC | 3 cut(s) | 123, 528, 579 |
| BspMI | ACCTGC | 1 cut(s) | 190 |
| BspOI | GCTAGC | 1 cut(s) | 446 |
| BspPI | GGATC | 2 cut(s) | 116, 129 |
| BspT107I | GGYRCC | 1 cut(s) | 526 |
| BssECI | CCNNGG | 1 cut(s) | 68 |
| BssMI | GATC | 4 cut(s) | 40, 121, 247, 636 |
| BssNI | GRCGYC | 1 cut(s) | 388 |
| BssT1I | CCWWGG | 1 cut(s) | 68 |
| Bst2UI | CCWGG | 1 cut(s) | 582 |
| Bst4CI | ACNGT | 2 cut(s) | 439, 692 |
| Bst6I | CTCTTC | 3 cut(s) | 29, 155, 420 |
| BstACI | GRCGYC | 1 cut(s) | 388 |
| BstC8I | GCNNGC | 3 cut(s) | 229, 233, 444 |
| BstDEI | CTNAG | 3 cut(s) | 522, 600, 719 |
| BstDSI | CCRYGG | 1 cut(s) | 68 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 572, 603 |
| BstKTI | GATC | 4 cut(s) | 43, 124, 250, 639 |
| BstMAI | GTCTC | 1 cut(s) | 564 |
| BstMBI | GATC | 4 cut(s) | 40, 121, 247, 636 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 224, 371 |
| BstNI | CCWGG | 1 cut(s) | 582 |
| BstNSI | RCATGY | 2 cut(s) | 299, 631 |
| BstSCI | CCNGG | 1 cut(s) | 580 |
| BstV1I | GCAGC | 2 cut(s) | 84, 460 |
| BstV2I | GAAGAC | 1 cut(s) | 630 |
| BstX2I | RGATCY | 1 cut(s) | 121 |
| BstYI | RGATCY | 1 cut(s) | 121 |
| Bsu36I | CCTNAGG | 1 cut(s) | 600 |
| BsuI | GTATCC | 1 cut(s) | 145 |
| BsuRI | GGCC | 3 cut(s) | 273, 421, 567 |
| BtgI | CCRYGG | 1 cut(s) | 68 |
| BveI | ACCTGC | 1 cut(s) | 190 |
| Cac8I | GCNNGC | 3 cut(s) | 229, 233, 444 |
| Cfr13I | GGNCC | 2 cut(s) | 65, 608 |
| CseI | GACGC | 1 cut(s) | 498 |
| Csp6I | GTAC | 4 cut(s) | 73, 92, 327, 456 |
| CviAII | CATG | 5 cut(s) | 69, 139, 287, 296, 628 |
| CviQI | GTAC | 4 cut(s) | 73, 92, 327, 456 |
| DdeI | CTNAG | 3 cut(s) | 522, 600, 719 |
| DpnI | GATC | 4 cut(s) | 42, 123, 249, 638 |
| DpnII | GATC | 4 cut(s) | 40, 121, 247, 636 |
| Eam1104I | CTCTTC | 3 cut(s) | 29, 155, 420 |
| EarI | CTCTTC | 3 cut(s) | 29, 155, 420 |
| Eco130I | CCWWGG | 1 cut(s) | 68 |
| Eco147I | AGGCCT | 2 cut(s) | 273, 421 |
| Eco47I | GGWCC | 2 cut(s) | 65, 608 |
| Eco57I | CTGAAG | 3 cut(s) | 53, 444, 729 |
| Eco81I | CCTNAGG | 1 cut(s) | 600 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 572, 603 |
| EcoO109I | RGGNCCY | 1 cut(s) | 608 |
| EcoRI | GAATTC | 1 cut(s) | 533 |
| EcoRII | CCWGG | 1 cut(s) | 580 |
| EcoT14I | CCWWGG | 1 cut(s) | 68 |
| ErhI | CCWWGG | 1 cut(s) | 68 |
| FaeI | CATG | 5 cut(s) | 72, 142, 290, 299, 631 |
| FaiI | YATR | 9 cut(s) | 70, 140, 209, 288, 297, 302, 372, 507, 629 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 642, 674 |
| FatI | CATG | 5 cut(s) | 68, 138, 286, 295, 627 |
| FbaI | TGATCA | 2 cut(s) | 247, 636 |
| Fnu4HI | GCNGC | 2 cut(s) | 98, 474 |
| Fsp4HI | GCNGC | 2 cut(s) | 98, 474 |
| FspBI | CTAG | 5 cut(s) | 188, 443, 662, 735, 753 |
| GluI | GCNGC | 2 cut(s) | 98, 474 |
| GsaI | CCCAGC | 1 cut(s) | 8 |
| GsuI | CTGGAG | 1 cut(s) | 564 |
| HaeIII | GGCC | 3 cut(s) | 273, 421, 567 |
| HapII | CCGG | 1 cut(s) | 530 |
| HgaI | GACGC | 1 cut(s) | 498 |
| Hin1I | GRCGYC | 1 cut(s) | 388 |
| Hin1II | CATG | 5 cut(s) | 72, 142, 290, 299, 631 |
| HinfI | GANTC | 2 cut(s) | 142, 595 |
| HpaII | CCGG | 1 cut(s) | 530 |
| HphI | GGTGA | 1 cut(s) | 13 |
| Hpy188I | TCNGA | 1 cut(s) | 252 |
| Hpy188III | TCNNGA | 3 cut(s) | 239, 481, 640 |
| Hpy99I | CGWCG | 1 cut(s) | 390 |
| HpyAV | CCTTC | 3 cut(s) | 322, 599, 648 |
| HpyCH4III | ACNGT | 2 cut(s) | 439, 692 |
| HpyCH4IV | ACGT | 1 cut(s) | 388 |
| HpyCH4V | TGCA | 4 cut(s) | 100, 227, 374, 631 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 224, 371 |
| HpyF3I | CTNAG | 3 cut(s) | 522, 600, 719 |
| HpySE526I | ACGT | 1 cut(s) | 388 |
| Hsp92I | GRCGYC | 1 cut(s) | 388 |
| Hsp92II | CATG | 5 cut(s) | 72, 142, 290, 299, 631 |
| Ksp22I | TGATCA | 2 cut(s) | 247, 636 |
| Kzo9I | GATC | 4 cut(s) | 40, 121, 247, 636 |
| LmnI | GCTCC | 3 cut(s) | 370, 514, 583 |
| Lsp1109I | GCAGC | 2 cut(s) | 84, 460 |
| LweI | GCATC | 1 cut(s) | 244 |
| MaeI | CTAG | 5 cut(s) | 188, 443, 662, 735, 753 |
| MaeII | ACGT | 1 cut(s) | 388 |
| MaeIII | GTNAC | 1 cut(s) | 700 |
| MalI | GATC | 4 cut(s) | 42, 123, 249, 638 |
| MboI | GATC | 4 cut(s) | 40, 121, 247, 636 |
| MboII | GAAGA | 9 cut(s) | 46, 142, 145, 422, 437, 635, 655, 658, 722 |
| MfeI | CAATTG | 1 cut(s) | 393 |
| MflI | RGATCY | 1 cut(s) | 121 |
| MhlI | GDGCHC | 1 cut(s) | 367 |
| MluCI | AATT | 5 cut(s) | 393, 533, 545, 588, 774 |
| MmeI | TCCRAC | 1 cut(s) | 711 |
| MnlI | CCTC | 8 cut(s) | 56, 393, 421, 462, 479, 568, 578, 753 |
| MseI | TTAA | 2 cut(s) | 27, 759 |
| MspA1I | CMGCKG | 1 cut(s) | 127 |
| MspI | CCGG | 1 cut(s) | 530 |
| MspR9I | CCNGG | 1 cut(s) | 582 |
| MunI | CAATTG | 1 cut(s) | 393 |
| MvaI | CCWGG | 1 cut(s) | 582 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 224, 371 |
| NcoI | CCATGG | 1 cut(s) | 68 |
| NdeII | GATC | 4 cut(s) | 40, 121, 247, 636 |
| NheI | GCTAGC | 1 cut(s) | 442 |
| NlaIII | CATG | 5 cut(s) | 72, 142, 290, 299, 631 |
| NlaIV | GGNNCC | 3 cut(s) | 123, 528, 579 |
| NmuCI | GTSAC | 1 cut(s) | 700 |
| NspI | RCATGY | 2 cut(s) | 299, 631 |
| PaqCI | CACCTGC | 1 cut(s) | 190 |
| PceI | AGGCCT | 2 cut(s) | 273, 421 |
| PfeI | GAWTC | 2 cut(s) | 142, 595 |
| PfoI | TCCNGGA | 1 cut(s) | 580 |
| PkrI | GCNGC | 2 cut(s) | 99, 475 |
| PpuMI | RGGWCCY | 1 cut(s) | 608 |
| Psp5II | RGGWCCY | 1 cut(s) | 608 |
| Psp6I | CCWGG | 1 cut(s) | 580 |
| PspFI | CCCAGC | 1 cut(s) | 4 |
| PspGI | CCWGG | 1 cut(s) | 580 |
| PspN4I | GGNNCC | 3 cut(s) | 123, 528, 579 |
| PspPI | GGNCC | 2 cut(s) | 65, 608 |
| PspPPI | RGGWCCY | 1 cut(s) | 608 |
| PsuI | RGATCY | 1 cut(s) | 121 |
| RsaI | GTAC | 4 cut(s) | 74, 93, 328, 457 |
| RsaNI | GTAC | 4 cut(s) | 73, 92, 327, 456 |
| SaqAI | TTAA | 2 cut(s) | 27, 759 |
| SatI | GCNGC | 2 cut(s) | 98, 474 |
| Sau3AI | GATC | 4 cut(s) | 40, 121, 247, 636 |
| Sau96I | GGNCC | 2 cut(s) | 65, 608 |
| ScrFI | CCNGG | 1 cut(s) | 582 |
| SduI | GDGCHC | 1 cut(s) | 367 |
| SfaNI | GCATC | 1 cut(s) | 244 |
| SinI | GGWCC | 2 cut(s) | 65, 608 |
| Sse9I | AATT | 5 cut(s) | 393, 533, 545, 588, 774 |
| SseBI | AGGCCT | 2 cut(s) | 273, 421 |
| SsiI | CCGC | 1 cut(s) | 125 |
| SspMI | CTAG | 5 cut(s) | 188, 443, 662, 735, 753 |
| StuI | AGGCCT | 2 cut(s) | 273, 421 |
| StyD4I | CCNGG | 1 cut(s) | 580 |
| StyI | CCWWGG | 1 cut(s) | 68 |
| TaaI | ACNGT | 2 cut(s) | 439, 692 |
| TaiI | ACGT | 1 cut(s) | 391 |
| TaqI | TCGA | 4 cut(s) | 221, 349, 385, 745 |
| TasI | AATT | 5 cut(s) | 393, 533, 545, 588, 774 |
| TatI | WGTACW | 1 cut(s) | 91 |
| TfiI | GAWTC | 2 cut(s) | 142, 595 |
| Tru1I | TTAA | 2 cut(s) | 27, 759 |
| Tru9I | TTAA | 2 cut(s) | 27, 759 |
| TseFI | GTSAC | 1 cut(s) | 700 |
| TseI | GCWGC | 2 cut(s) | 97, 473 |
| Tsp45I | GTSAC | 1 cut(s) | 700 |
| TspDTI | ATGAA | 4 cut(s) | 155, 224, 275, 423 |
| VpaK11BI | GGWCC | 2 cut(s) | 65, 608 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 572, 603 |
| XapI | RAATTY | 4 cut(s) | 533, 545, 588, 774 |
| XceI | RCATGY | 2 cut(s) | 299, 631 |
| XspI | CTAG | 5 cut(s) | 188, 443, 662, 735, 753 |
| ZraI | GACGTC | 1 cut(s) | 389 |